Automated segmentation of sulcal regions

Maryam E. Rettmann, Chenyang Xu, Dzung L. Pham, Jerry Ladd Prince

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Automatic segmentation and identification of cortical sulci play an important role in the study of brain structure and function. In this work, a method is presented for the automatic segmentation of sulcal regions of cortex. Unlike previous methods that extract the sulcal spaces within the cortex, the proposed method extracts actual regions of the cortical surface that surround sulci. Sulcal regions are segmented from the medial surface as well as the lateral and inferior surfaces. The method first generates a depth map on the surface, computed by measuring the distance between the cortex and an outer “shrink-wrap” surface. Sulcal regions are then extracted using a hierarchical algorithm that alternates between thresholding and region growing operations. To visualize the buried regions of the segmented cortical surface, an efficient technique for mapping the surface to a sphere is proposed. Preliminary results are presented on the geometric analysis of sulcal regions for automated identification.

Original languageEnglish (US)
Title of host publicationLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
PublisherSpringer Verlag
Pages158-168
Number of pages11
Volume1679
ISBN (Print)354066503X, 9783540665038
StatePublished - 1999
Event2nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 1999 - Cambridge, United Kingdom
Duration: Sep 19 1999Sep 22 1999

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume1679
ISSN (Print)03029743
ISSN (Electronic)16113349

Other

Other2nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 1999
CountryUnited Kingdom
CityCambridge
Period9/19/999/22/99

Fingerprint

Segmentation
Cortex
Geometric Analysis
Region Growing
Depth Map
Thresholding
Alternate
Lateral
Brain

ASJC Scopus subject areas

  • Computer Science(all)
  • Theoretical Computer Science

Cite this

Rettmann, M. E., Xu, C., Pham, D. L., & Prince, J. L. (1999). Automated segmentation of sulcal regions. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 1679, pp. 158-168). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 1679). Springer Verlag.

Automated segmentation of sulcal regions. / Rettmann, Maryam E.; Xu, Chenyang; Pham, Dzung L.; Prince, Jerry Ladd.

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 1679 Springer Verlag, 1999. p. 158-168 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 1679).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Rettmann, ME, Xu, C, Pham, DL & Prince, JL 1999, Automated segmentation of sulcal regions. in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). vol. 1679, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 1679, Springer Verlag, pp. 158-168, 2nd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 1999, Cambridge, United Kingdom, 9/19/99.
Rettmann ME, Xu C, Pham DL, Prince JL. Automated segmentation of sulcal regions. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 1679. Springer Verlag. 1999. p. 158-168. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
Rettmann, Maryam E. ; Xu, Chenyang ; Pham, Dzung L. ; Prince, Jerry Ladd. / Automated segmentation of sulcal regions. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 1679 Springer Verlag, 1999. pp. 158-168 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
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