ASAP: Automated sequences annotation pipeline for web-based updating of sequence information with a local dynamic database

Andrew Kossenkov; Frank J. Manion; Eugene Korotkov; Thomas D. Moloshok; Michael F. Ochs

doi:10.1093/bioinformatics/btg056

ASAP: Automated sequences annotation pipeline for web-based updating of sequence information with a local dynamic database

Andrew Kossenkov, Frank J. Manion, Eugene Korotkov, Thomas D. Moloshok, Michael F. Ochs

Research output: Contribution to journal › Article › peer-review

15 Scopus citations

Abstract

Summary: The automated sequence annotation pipeline (ASAP) is designed to ease routine investigation of new functional annotations on unknown sequences, such as expressed sequence tags (ESTs), through querying of web-accessible resources and maintenance of a local database. The system allows easy use of the output from one search as the input for a new search, as well as the filtering of results. The database is used to store formats and parameters and information for parsing data from web sites. The database permits easy updating of format information should a site modify the format of a query or of a returned web page.

Original language	English (US)
Pages (from-to)	675-676
Number of pages	2
Journal	Bioinformatics
Volume	19
Issue number	5
DOIs	https://doi.org/10.1093/bioinformatics/btg056
State	Published - Mar 22 2003
Externally published	Yes

ASJC Scopus subject areas

Clinical Biochemistry
Computer Science Applications
Computational Theory and Mathematics

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abstract = "Summary: The automated sequence annotation pipeline (ASAP) is designed to ease routine investigation of new functional annotations on unknown sequences, such as expressed sequence tags (ESTs), through querying of web-accessible resources and maintenance of a local database. The system allows easy use of the output from one search as the input for a new search, as well as the filtering of results. The database is used to store formats and parameters and information for parsing data from web sites. The database permits easy updating of format information should a site modify the format of a query or of a returned web page.",

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AU - Ochs, Michael F.

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ASAP: Automated sequences annotation pipeline for web-based updating of sequence information with a local dynamic database

Abstract

ASJC Scopus subject areas

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