Allostery is an intrinsic property of the protease domain of DegS: Implications for enzyme function and evolution

Jungsan Sohn, Robert A. Grant, Robert T. Sauer

Research output: Contribution to journalArticle


DegS is a periplasmic Escherichia coli protease, which functions as a trimer to catalyze the initial rate-limiting step in a proteolytic cascade that ultimately activates transcription of stress response genes in the cytoplasm. Each DegS subunit consists of a protease domain and a PDZ domain. During protein folding stress, DegS is allosterically activated by peptides exposed in misfolded outer membrane porins, which bind to the PDZ domain and stabilize the active protease. It is not known whether allostery is conferred by the PDZ domains or is an intrinsic feature of the trimeric protease domain. Here, we demonstrate that free DegSΔPDZ equilibrates between active and inactive trimers with the latter species predominating. Substrate binding stabilizes active DegSΔPDZ in a positively cooperative fashion. Mutations can also stabilize active DegSΔPDZ and produce an enzyme that displays hyperbolic kinetics and degrades substrate with a maximal velocity within error of that for fully activated, intact DegS. Crystal structures of multiple DegSΔPDZ variants, in functional and non-functional conformations, support a two-state model in which allosteric switching is mediated by changes in specific elements of tertiary structure in the context of an invariant trimeric base. Overall, our results indicate that protein substrates must bind sufficiently tightly and specifically to the functional conformation of DegSΔPDZ to assist their own degradation. Thus, substrate binding alone may have regulated the activities of ancestral DegS trimers with subsequent fusion of the protease domain to a PDZ domain, resulting in ligand-mediated regulation.

Original languageEnglish (US)
Pages (from-to)34039-34047
Number of pages9
JournalJournal of Biological Chemistry
Issue number44
StatePublished - Oct 29 2010

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology
  • Cell Biology

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