Age-Specific Gene Expression Signatures for Breast Tumors and Cross-Species Conserved Potential Cancer Progression Markers in Young Women

Dilek Colak, Asmaa Nofal, AlBandary B. AlBakheet, Maimoona Nirmal, Hatim Jeprel, Abdelmoneim Eldali, Taher AL-Tweigeri, Asma Tulbah, Dahish Ajarim, Osama Al Malik, Mehmet S. Inan, Namik Kaya, Ben H. Park, Suad M. Bin Amer

Research output: Contribution to journalArticle

Abstract

Breast cancer in young women is more aggressive with a poorer prognosis and overall survival compared to older women diagnosed with the disease. Despite recent research, the underlying biology and molecular alterations that drive the aggressive nature of breast tumors associated with breast cancer in young women have yet to be elucidated. In this study, we performed transcriptomic profile and network analyses of breast tumors arising in Middle Eastern women to identify age-specific gene signatures. Moreover, we studied molecular alterations associated with cancer progression in young women using cross-species comparative genomics approach coupled with copy number alterations (CNA) associated with breast cancers from independent studies. We identified 63 genes specific to tumors in young women that showed alterations distinct from two age cohorts of older women. The network analyses revealed potential critical regulatory roles for Myc, PI3K/Akt, NF-κB, and IL-1 in disease characteristics of breast tumors arising in young women. Cross-species comparative genomics analysis of progression from pre-invasive ductal carcinoma in situ (DCIS) to invasive ductal carcinoma (IDC) revealed 16 genes with concomitant genomic alterations, CCNB2, UBE2C, TOP2A, CEP55, TPX2, BIRC5, KIAA0101, SHCBP1, UBE2T, PTTG1, NUSAP1, DEPDC1, HELLS, CCNB1, KIF4A, and RRM2, that may be involved in tumorigenesis and in the processes of invasion and progression of disease. Array findings were validated using qRT-PCR, immunohistochemistry, and extensive in silico analyses of independently performed microarray datasets. To our knowledge, this study provides the first comprehensive genomic analysis of breast cancer in Middle Eastern women in age-specific cohorts and potential markers for cancer progression in young women. Our data demonstrate that cancer appearing in young women contain distinct biological characteristics and deregulated signaling pathways. Moreover, our integrative genomic and cross-species analysis may provide robust biomarkers for the detection of disease progression in young women, and lead to more effective treatment strategies.

Original languageEnglish (US)
Article numbere63204
JournalPLoS One
Volume8
Issue number5
DOIs
StatePublished - May 21 2013

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Transcriptome
Gene expression
breast neoplasms
Tumors
Breast Neoplasms
gene expression
neoplasms
Genes
Neoplasms
genomics
Biomarkers
Microarrays
Phosphatidylinositol 3-Kinases
Interleukin-1
Genomics
disease course
carcinoma
Disease Progression
Ductal Carcinoma
Carcinoma, Intraductal, Noninfiltrating

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Age-Specific Gene Expression Signatures for Breast Tumors and Cross-Species Conserved Potential Cancer Progression Markers in Young Women. / Colak, Dilek; Nofal, Asmaa; AlBakheet, AlBandary B.; Nirmal, Maimoona; Jeprel, Hatim; Eldali, Abdelmoneim; AL-Tweigeri, Taher; Tulbah, Asma; Ajarim, Dahish; Malik, Osama Al; Inan, Mehmet S.; Kaya, Namik; Park, Ben H.; Bin Amer, Suad M.

In: PLoS One, Vol. 8, No. 5, e63204, 21.05.2013.

Research output: Contribution to journalArticle

Colak, D, Nofal, A, AlBakheet, AB, Nirmal, M, Jeprel, H, Eldali, A, AL-Tweigeri, T, Tulbah, A, Ajarim, D, Malik, OA, Inan, MS, Kaya, N, Park, BH & Bin Amer, SM 2013, 'Age-Specific Gene Expression Signatures for Breast Tumors and Cross-Species Conserved Potential Cancer Progression Markers in Young Women', PLoS One, vol. 8, no. 5, e63204. https://doi.org/10.1371/journal.pone.0063204
Colak, Dilek ; Nofal, Asmaa ; AlBakheet, AlBandary B. ; Nirmal, Maimoona ; Jeprel, Hatim ; Eldali, Abdelmoneim ; AL-Tweigeri, Taher ; Tulbah, Asma ; Ajarim, Dahish ; Malik, Osama Al ; Inan, Mehmet S. ; Kaya, Namik ; Park, Ben H. ; Bin Amer, Suad M. / Age-Specific Gene Expression Signatures for Breast Tumors and Cross-Species Conserved Potential Cancer Progression Markers in Young Women. In: PLoS One. 2013 ; Vol. 8, No. 5.
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