A Super‐Family of Medium‐Chain Dehydrogenases/Reductases (MDR): Sub‐Lines including ζ‐Crystallin, Alcohol and Polyol Dehydrogenases, Quinone Oxidoreductases, Enoyl Reductases, VAT‐1 and other Proteins

Bengt Persson, J. Samuel Zigler, Hans Jörnvall

Research output: Contribution to journalArticle

Abstract

The protein super‐family of medium‐chain alcohol dehydrogenases (and glutathione‐dependent formaldehyde dehydrogenase), polyol dehydrogenases, threonine dehydrogenase, archaeon glucose dehydrogenase, and eye lens reductase‐active ζ‐crystallins also includes Escherichia coli quinone oxidoreductase, Torpedo VAT‐1 protein, and enoyl reductases of mammalian fatty acid and yeast erythronolide synthases. In addition, two proteins with hitherto unknown function are shown to belong to this super‐family of medium‐chain dehydrogenases and reductases (MDR). Alignment of ζ‐crystallins/quinone oxidoreductases/VAT‐1 reveals 38 strictly conserved residues, of which approximately half are glycine residues, including those at several space‐restricted turn positions and critical coenzyme‐binding positions in the alcohol dehydrogenases. This indicates a conserved three‐dimensional structure at the corresponding parts of these distantly related proteins and a conserved binding of a coenzyme in the two proteins with hitherto unknown function, thus ascribing a likely oxidoreductase function to these proteins. When all forms are aligned, including enoyl reductases, a ζ‐crystallin homologue from Leishmania and the two proteins with hitherto unknown function, only three residues are strictly conserved among the 106 proteins characterised within the super‐family, and significantly these residues are all glycines, corresponding to Gly66, Gly86 and Gly201 of mammalian class I alcohol dehydrogenase. Notably, these residues are located in different domains. Hence, a distant origin and divergent functions, but related forms and interactions, appear to apply to the entire chains of the many prokarotic and eukaryotic members. Additionally, in the ζ‐crystallins/quinone oxidoreductases, a highly conserved tyrosine residue is found. This residue, in the three‐dimensional structure of the homologous alcohol dehydrogenase, is positioned at the sub‐unit cleft that contains the active site and could therefore be involved in catalysis. If so, this residue and its role may resemble the pattern of a conserved tyrosine residue in the different family of short‐chain dehydrogenases/reductases (SDR).

Original languageEnglish (US)
Pages (from-to)15-22
Number of pages8
JournalEuropean Journal of Biochemistry
Volume226
Issue number1
DOIs
StatePublished - Nov 1994

ASJC Scopus subject areas

  • Biochemistry

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