A standard reference frame for the description of nucleic acid base-pair geometry

W. K. Olson; M. Bansal; S. K. Burley; R. E. Dickerson; M. Gerstein; S. C. Harvey; U. Heinemann; X. J. Lu; S. Neidle; Z. Shakked; H. Sklenar; M. Suzuki; C. S. Tung; E. Westhof; C. Wolberger; H. M. Berman

doi:10.1006/jmbi.2001.4987

A standard reference frame for the description of nucleic acid base-pair geometry

W. K. Olson, M. Bansal, S. K. Burley, R. E. Dickerson, M. Gerstein, S. C. Harvey, U. Heinemann, X. J. Lu, S. Neidle, Z. Shakked, H. Sklenar, M. Suzuki, C. S. Tung, E. Westhof, C. Wolberger, H. M. Berman

Research output: Contribution to journal › Article › peer-review

427 Scopus citations

Original language	English (US)
Pages (from-to)	229-237
Number of pages	9
Journal	Journal of molecular biology
Volume	313
Issue number	1
DOIs	https://doi.org/10.1006/jmbi.2001.4987
State	Published - Oct 12 2001
Externally published	Yes

Keywords

Base-pair geometry
Nucleic acid conformation
Standard reference frame

ASJC Scopus subject areas

Biophysics
Structural Biology
Molecular Biology

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10.1006/jmbi.2001.4987

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Olson, W. K., Bansal, M., Burley, S. K., Dickerson, R. E., Gerstein, M., Harvey, S. C., Heinemann, U., Lu, X. J., Neidle, S., Shakked, Z., Sklenar, H., Suzuki, M., Tung, C. S., Westhof, E., Wolberger, C., & Berman, H. M. (2001). A standard reference frame for the description of nucleic acid base-pair geometry. Journal of molecular biology, 313(1), 229-237. https://doi.org/10.1006/jmbi.2001.4987

Olson, WK, Bansal, M, Burley, SK, Dickerson, RE, Gerstein, M, Harvey, SC, Heinemann, U, Lu, XJ, Neidle, S, Shakked, Z, Sklenar, H, Suzuki, M, Tung, CS, Westhof, E, Wolberger, C & Berman, HM 2001, 'A standard reference frame for the description of nucleic acid base-pair geometry', Journal of molecular biology, vol. 313, no. 1, pp. 229-237. https://doi.org/10.1006/jmbi.2001.4987

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title = "A standard reference frame for the description of nucleic acid base-pair geometry",

keywords = "Base-pair geometry, Nucleic acid conformation, Standard reference frame",

author = "Olson, {W. K.} and M. Bansal and Burley, {S. K.} and Dickerson, {R. E.} and M. Gerstein and Harvey, {S. C.} and U. Heinemann and Lu, {X. J.} and S. Neidle and Z. Shakked and H. Sklenar and M. Suzuki and Tung, {C. S.} and E. Westhof and C. Wolberger and Berman, {H. M.}",

note = "Funding Information: The standardization of these parameters was the subject of the Tsukuba Workshop on Nucleic Acid Structure and Interactions that was organized by the Nucleic Acid Database (NDB; USA) and the Structural Biology Centre (Japan). The workshop was held on January 13–14, 1999 at the AIST-NIBHT Structural Biology Centre in Tsukuba, Japan and was sponsored by the COE program of the Science and Technology Agency (Japan) in association with the CREST program of the Japan Science and Technology Corporation and the National Science Foundation (USA; NSF BIR 95 10703). This document was prepared and made available from the NDB Web site ( http://ndbserver.rutgers.edu/NDB/archives/ ) for public review and discussion. It was reviewed and approved by the IUBMB Nomenclature Committee at their May 2001 meeting. The survey of small molecule crystal structures was performed by John Westbrook with support from the NDB (NSF BIR 95 10703). The optimization of standard base-pair geometry and the calculation of derived parameters were carried out by Xiang-Jun Lu and Wilma K. Olson with support from U.S.P.H.S. grant GM20861. ",

year = "2001",

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day = "12",

doi = "10.1006/jmbi.2001.4987",

language = "English (US)",

volume = "313",

pages = "229--237",

journal = "Journal of Molecular Biology",

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TY - JOUR

T1 - A standard reference frame for the description of nucleic acid base-pair geometry

AU - Olson, W. K.

AU - Bansal, M.

AU - Burley, S. K.

AU - Dickerson, R. E.

AU - Gerstein, M.

AU - Harvey, S. C.

AU - Heinemann, U.

AU - Lu, X. J.

AU - Neidle, S.

AU - Shakked, Z.

AU - Sklenar, H.

AU - Suzuki, M.

AU - Tung, C. S.

AU - Westhof, E.

AU - Wolberger, C.

AU - Berman, H. M.

N1 - Funding Information: The standardization of these parameters was the subject of the Tsukuba Workshop on Nucleic Acid Structure and Interactions that was organized by the Nucleic Acid Database (NDB; USA) and the Structural Biology Centre (Japan). The workshop was held on January 13–14, 1999 at the AIST-NIBHT Structural Biology Centre in Tsukuba, Japan and was sponsored by the COE program of the Science and Technology Agency (Japan) in association with the CREST program of the Japan Science and Technology Corporation and the National Science Foundation (USA; NSF BIR 95 10703). This document was prepared and made available from the NDB Web site ( http://ndbserver.rutgers.edu/NDB/archives/ ) for public review and discussion. It was reviewed and approved by the IUBMB Nomenclature Committee at their May 2001 meeting. The survey of small molecule crystal structures was performed by John Westbrook with support from the NDB (NSF BIR 95 10703). The optimization of standard base-pair geometry and the calculation of derived parameters were carried out by Xiang-Jun Lu and Wilma K. Olson with support from U.S.P.H.S. grant GM20861.

PY - 2001/10/12

Y1 - 2001/10/12

KW - Base-pair geometry

KW - Nucleic acid conformation

KW - Standard reference frame

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JO - Journal of Molecular Biology

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A standard reference frame for the description of nucleic acid base-pair geometry

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ASJC Scopus subject areas

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