A plausible model for the digital response of p53 to DNA damage

Lan Ma, John Wagner, John Jeremy Rice, Wenwei Hu, Arnold J. Levine, Gustavo A. Stolovitzky

Research output: Contribution to journalArticle

Abstract

Recent observations show that the single-cell response of p53 to ionizing radiation (IR) is "digital" in that it is the number of oscillations rather than the amplitude of p53 that shows dependence on the radiation dose. We present a model of this phenomenon. In our model, double-strand break (DSB) sites induced by IR interact with a limiting pool of DNA repair proteins, forming DSB-protein complexes at DNA damage foci. The persisting complexes are sensed by ataxia telangiectasia mutated (ATM), a protein kinase that activates p53 once it is phosphorylated by DNA damage. The ATM-sensing module switches on or off the downstream p53 oscillator, consisting of a feedback loop formed by p53 and its negative regulator, Mdm2. In agreement with experiments, our simulations show that by assuming stochasticity in the initial number of DSBs and the DNA repair process, p53 and Mdm2 exhibit a coordinated oscillatory dynamics upon IR stimulation in single cells, with a stochastic number of oscillations whose mean increases with IR dose. The damped oscillations previously observed in cell populations can be explained as the aggregate behavior of single cells.

Original languageEnglish (US)
Pages (from-to)14266-14271
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume102
Issue number40
DOIs
StatePublished - Oct 4 2005
Externally publishedYes

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Ionizing Radiation
DNA Damage
DNA Repair
Ataxia Telangiectasia Mutated Proteins
Ataxia Telangiectasia
Protein Kinases
Proteins
Radiation
Population

Keywords

  • DNA damage response
  • Mathematical model of p53
  • p53 pathway
  • p53 regulation

ASJC Scopus subject areas

  • Genetics
  • General

Cite this

A plausible model for the digital response of p53 to DNA damage. / Ma, Lan; Wagner, John; Rice, John Jeremy; Hu, Wenwei; Levine, Arnold J.; Stolovitzky, Gustavo A.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 40, 04.10.2005, p. 14266-14271.

Research output: Contribution to journalArticle

Ma, Lan ; Wagner, John ; Rice, John Jeremy ; Hu, Wenwei ; Levine, Arnold J. ; Stolovitzky, Gustavo A. / A plausible model for the digital response of p53 to DNA damage. In: Proceedings of the National Academy of Sciences of the United States of America. 2005 ; Vol. 102, No. 40. pp. 14266-14271.
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