A guide to integrating transcriptional regulatory and metabolic networks using PROM (probabilistic regulation of metabolism)

Evangelos Simeonidis, Sriram Chandrasekaran, Nathan D. Price

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Scopus citations

Abstract

The integration of transcriptional regulatory and metabolic networks is a crucial step in the process of predicting metabolic behaviors that emerge from either genetic or environmental changes. Here, we present a guide to PROM (probabilistic regulation of metabolism), an automated method for the construction and simulation of integrated metabolic and transcriptional regulatory networks that enables large-scale phenotypic predictions for a wide range of model organisms.

Original languageEnglish (US)
Title of host publicationSystems Metabolic Engineering
Subtitle of host publicationMethods and Protocols
PublisherHumana Press Inc.
Pages103-112
Number of pages10
ISBN (Print)9781627032988
DOIs
StatePublished - 2013
Externally publishedYes

Publication series

NameMethods in Molecular Biology
Volume985
ISSN (Print)1064-3745

Keywords

  • Constraintbased modeling
  • Metabolic networks
  • Microarray data
  • Probabilistic regulation of metabolism
  • Systems biology
  • Transcriptional regulatory networks

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

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