A Golgi rhomboid protease Rbd2 recruits Cdc48 to cleave yeast SREBP

Jiwon Hwang, Diedre Ribbens, Sumana Raychaudhuri, Leah Cairns, He Gu, Adam Frost, Sinisa Urban, Peter Espenshade

Research output: Contribution to journalArticle

Abstract

Hypoxic growth of fungi requires sterol regulatory element-binding protein (SREBP) transcription factors, and human opportunistic fungal pathogens require SREBP activation for virulence. Proteolytic release of fission yeast SREBPs from the membrane in response to low oxygen requires the Golgi membrane-anchored Dsc E3 ligase complex. Using genetic interaction arrays, we identified Rbd2 as a rhomboid family protease required for SREBP proteolytic processing. Rbd2 is an active, Golgi-localized protease that cleaves the transmembrane segment of the TatA rhomboid model substrate. Epistasis analysis revealed that the Dsc E3 ligase acts on SREBP prior to cleavage by Rbd2. Using APEX2 proximity biotinylation, we demonstrated that Rbd2 binds the AAA-ATPase Cdc48 through a C-terminal SHP box. Interestingly, SREBP cleavage required Rbd2 binding of Cdc48, consistent with Cdc48 acting to recruit ubiquitinylated substrates. In support of this claim, overexpressing a Cdc48-binding mutant of Rbd2 bypassed the Cdc48 requirement for SREBP cleavage, demonstrating that Cdc48 likely plays a role in SREBP recognition. In the absence of functional Rbd2, SREBP precursor is degraded by the proteasome, indicating that Rbd2 activity controls the balance between SREBP activation and degradation.

Original languageEnglish (US)
JournalEMBO Journal
DOIs
StateAccepted/In press - 2016

Fingerprint

Sterol Regulatory Element Binding Proteins
Yeast
Peptide Hydrolases
Yeasts
Ubiquitin-Protein Ligases
Chemical activation
Biotinylation
Membranes
Protein Precursors
Schizosaccharomyces
Pathogens
Proteasome Endopeptidase Complex
Substrates
Fungi
Proteolysis
Virulence
Adenosine Triphosphatases
Transcription Factors
Thermodynamic properties
Oxygen

Keywords

  • SREBP
  • Cdc48/p97
  • Intramembrane proteolysis
  • Rhomboid
  • Ubiquitin

ASJC Scopus subject areas

  • Neuroscience(all)
  • Molecular Biology
  • Immunology and Microbiology(all)
  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

A Golgi rhomboid protease Rbd2 recruits Cdc48 to cleave yeast SREBP. / Hwang, Jiwon; Ribbens, Diedre; Raychaudhuri, Sumana; Cairns, Leah; Gu, He; Frost, Adam; Urban, Sinisa; Espenshade, Peter.

In: EMBO Journal, 2016.

Research output: Contribution to journalArticle

Hwang, Jiwon ; Ribbens, Diedre ; Raychaudhuri, Sumana ; Cairns, Leah ; Gu, He ; Frost, Adam ; Urban, Sinisa ; Espenshade, Peter. / A Golgi rhomboid protease Rbd2 recruits Cdc48 to cleave yeast SREBP. In: EMBO Journal. 2016.
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AU - Gu, He

AU - Frost, Adam

AU - Urban, Sinisa

AU - Espenshade, Peter

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