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2017

Differential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis

Cutler, J. A., Tahir, R., Sreenivasamurthy, S. K., Mitchell, C., Renuse, S., Nirujogi, R. S., Patil, A. H., Heydarian, M., Wong, X., Wu, X., Huang, T. C., Kim, M. S., Reddy, K. L. & Pandey, A., Mar 28 2017, (Accepted/In press) In : Leukemia.

Research output: Contribution to journalArticle

Proteins
Biotinylation
Cytoskeleton
Publications
Leukemia
VDJ Recombinases
RAG-1 Genes
Genetic Recombination
Catalytic Domain
DNA

Homer1a drives homeostatic scaling-down of excitatory synapses during sleep

Diering, G. H., Nirujogi, R. S., Roth, R. H., Worley, P. F., Pandey, A. & Huganir, R. L., Feb 3 2017, In : Science. 355, 6324, p. 511-515 5 p.

Research output: Contribution to journalArticle

Synapses
Sleep
Metabotropic Glutamate 5 Receptor
Neuronal Plasticity
Immediate-Early Genes

Human adenine nucleotide translocases physically and functionally interact with respirasomes

Lu, Y. W., Acoba, M. G., Selvaraju, K., Huang, T. C., Nirujogi, R. S., Sathe, G., Pandey, A. & Claypool, S. M., Jun 1 2017, In : Molecular Biology of the Cell. 28, 11, p. 1489-1506 18 p.

Research output: Contribution to journalArticle

ATP Translocases Mitochondrial ADP
Oxidative Phosphorylation
Protein Isoforms
Adenosine Diphosphate
Adenosine Triphosphate

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes

Prasad, T. S. K. , Mohanty, A. K. , Kumar, M. , Sreenivasamurthy, S. K. , Dey, G. , Nirujogi, R. S. , Pinto, S. M. , Madugundu, A. K. , Patil, A. H. , Advani, J. , Manda, S. S. , Gupta, M. K. , Dwivedi, S. B. , Kelkar, D. S. , Hall, B. , Jiang, X. , Peery, A. , Rajagopalan, P. , Yelamanchi, S. D. , Solanki, H. S. & 22 others Raja, R., Sathe, G. J., Chavan, S., Verma, R., Patel, K. M., Jain, A. P., Syed, N., Datta, K. K., Khan, A. A., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, C. J., Na, C. H., Kumar, N., Sinnis, P., Sharakhov, I. V., Wang, C., Gowda, H., Tu, Z., Kumar, A. & Pandey, A., Jan 1 2017, In : Genome Research. 27, 1, p. 133-144 12 p.

Research output: Contribution to journalArticle

Proteomics
Genome
Proteome
Genes
Exons

Mass Spectrometry Reveals Respiratory Viral Infection Biomarkers

Na, C. H. & Pandey, A. Apr 1 2017 In : EBioMedicine. 18, p. 21-22 2 p.

Research output: Contribution to journalComment/debate

Virus Diseases
Respiratory Tract Infections
Mass Spectrometry
Biomarkers

Mosquito-Borne Diseases and Omics: Tissue-Restricted Expression and Alternative Splicing Revealed by Transcriptome Profiling of Anopheles stephensi

Sreenivasamurthy, S. K., Madugundu, A. K., Patil, A. H., Dey, G., Mohanty, A. K., Kumar, M., Patel, K., Wang, C., Kumar, A., Pandey, A. & Prasad, T. S. K., Aug 1 2017, In : OMICS A Journal of Integrative Biology. 21, 8, p. 488-497 10 p.

Research output: Contribution to journalArticle

Anopheles
Alternative Splicing
Gene Expression Profiling
Culicidae
Malaria

Moving to Translational Proteomics

Pandey, A. Mar 1 2017 In : Proteomics. 17, 6, 1770042

Research output: Contribution to journalEditorial

Proteomics

Next-Generation Sequencing Reveals Novel Mutations in X-linked Intellectual Disability

Muthusamy, B., Selvan, L. D. N., Nguyen, T. T., Manoj, J., Stawiski, E. W., Jaiswal, B. S., Wang, W., Raja, R., Ramprasad, V. L., Gupta, R., Murugan, S., Kadandale, J. S., Keshava Prasad, T. S., Reddy, K., Peterson, A., Pandey, A., Seshagiri, S., Girimaji, S. C. & Gowda, H., May 1 2017, In : OMICS A Journal of Integrative Biology. 21, 5, p. 295-303 9 p.

Research output: Contribution to journalArticle

Intellectual Disability
Genes
Mutation
Health
Inborn Genetic Diseases

Proteomic composition and immunomodulatory properties of urinary bladder matrix scaffolds in homeostasis and injury

Sadtler, K., Sommerfeld, S. D., Wolf, M. T., Wang, X., Majumdar, S., Chung, L., Kelkar, D. S., Pandey, A. & Elisseeff, J. H., Feb 28 2017, (Accepted/In press) In : Seminars in Immunology.

Research output: Contribution to journalArticle

Proteomics
Urinary Bladder
Homeostasis
Wounds and Injuries
Biocompatible Materials

Quantitative Proteomic and Phosphoproteomic Analysis of H37Ra and H37Rv Strains of Mycobacterium tuberculosis

Verma, R., Pinto, S. M., Patil, A. H., Advani, J., Subba, P., Kumar, M., Sharma, J., Dey, G., Ravikumar, R., Buggi, S., Satishchandra, P., Sharma, K., Suar, M., Tripathy, S. P., Chauhan, D. S., Gowda, H., Pandey, A., Gandotra, S. & Prasad, T. S. K., Apr 7 2017, In : Journal of Proteome Research. 16, 4, p. 1632-1645 14 p.

Research output: Contribution to journalArticle

Mycobacterium tuberculosis
Proteomics
Phosphorylation
Virulence
Tuberculosis

Quantitative tyrosine phosphoproteomics of Epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response

Zhang, X., Maity, T., Kashyap, M. K., Bansal, M., Venugopalan, A., Singh, S., Awasthi, S., Marimuthu, A., Jacob, H. K. C., Belkina, N., Pitts, S., Cultraro, C. M., Gao, S., Kirkali, G., Biswas, R., Chaerkady, R., Califano, A., Pandey, A. & Guha, U., May 1 2017, In : Molecular and Cellular Proteomics. 16, 5, p. 891-910 20 p.

Research output: Contribution to journalArticle

Biomarkers
Epidermal Growth Factor Receptor
Protein-Tyrosine Kinases
Tyrosine
Phosphorylation

Small molecule inhibitor screening identifified HSP90 inhibitor 17-AAG as potential therapeutic agent for gallbladder cancer

Weber, H., Valbuena, J. R., Barbhuiya, M. A., Stein, S., Kunkel, H., García, P., Bizama, C., Riquelme, I., Espinoza, J. A., Kurtz, S. E., Tyner, J. W., Calderon, J. F., Corvalán, A. H., Grez, M., Pandey, A., Leal-Rojas, P. & Roa, J. C., 2017, In : Oncotarget. 8, 16, p. 26169-26184 16 p.

Research output: Contribution to journalArticle

tanespimycin
Gallbladder Neoplasms
Neoplasms
Therapeutics
G2 Phase Cell Cycle Checkpoints

The non-receptor tyrosine kinase TNK2/ACK1 is a novel therapeutic target in triple negative breast cancer

Wu, X., Zahari, M. S., Renuse, S., Kelkar, D. S., Bharbuiya, M. A., Rojas, P. L., Stearns, V., Gabrielson, E., Malla, P., Sukumar, S., Mahajan, N. P. & Pandey, A., 2017, In : Oncotarget. 8, 2, p. 2971-2983 13 p.

Research output: Contribution to journalArticle

Triple Negative Breast Neoplasms
Protein-Tyrosine Kinases
Breast Neoplasms
Therapeutics
Cell Line

Toward the human cellular microRNAome

McCall, M. N., Kim, M. S., Adil, M., Patil, A. H., Lu, Y., Mitchell, C. J., Leal-Rojas, P., Xu, J., Kumar, M., Dawson, V. L., Dawson, T. M., Baras, A. S., Rosenberg, A. Z., Arking, D. E., Burns, K. H., Pandey, A. & Halushka, M. K., Oct 1 2017, In : Genome Research. 27, 10, p. 1769-1781 13 p.

Research output: Contribution to journalArticle

MicroRNAs
RNA
Cell Line
Regulator Genes
Adipose Tissue

Understanding Epstein-barr virus life cycle with proteomics: A temporal analysis of ubiquitination during virus reactivation

Lv, D. W., Zhong, J., Zhang, K., Pandey, A. & Li, R., Jan 1 2017, In : OMICS A Journal of Integrative Biology. 21, 1, p. 27-37 11 p.

Research output: Contribution to journalArticle

Ubiquitination
Life Cycle Stages
Human Herpesvirus 4
Viruses
Proteomics

Whole Genome Sequencing of Mycobacterium tuberculosis Isolates from Extrapulmonary Sites

Sharma, K., Verma, R., Advani, J., Chatterjee, O., Solanki, H. S., Sharma, A., Varma, S., Modi, M., Ray, P., Mukherjee, K. K., Sharma, M., Dhillion, M. S., Suar, M., Chatterjee, A., Pandey, A., Prasad, T. S. K. & Gowda, H., Jul 1 2017, In : OMICS A Journal of Integrative Biology. 21, 7, p. 413-425 13 p.

Research output: Contribution to journalArticle

Mycobacterium tuberculosis
Genes
Genome
Tuberculosis
Drug Resistance
2016

A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma

Radhakrishnan, A. , Nanjappa, V. , Raja, R. , Sathe, G. , Puttamallesh, V. N. , Jain, A. P. , Pinto, S. M. , Balaji, S. A. , Chavan, S. , Sahasrabuddhe, N. A. , Mathur, P. P. , Kumar, M. M. , Prasad, T. S. K. , Santosh, V. , Sukumar, G. , Califano, J. A. , Rangarajan, A. , Sidransky, D. , Pandey, A. , Gowda, H. & 1 others Chatterjee, A., Oct 31 2016, In : Scientific Reports. 6, 36132

Research output: Contribution to journalArticle

Phosphotransferases
Cell Line
Therapeutics
Neoplasms
Phosphorylation

A sequence upstream of canonical PDZ-binding motif within CFTR COOH-terminus enhances NHERF1 interaction

Sharma, N., LaRusch, J., Sosnay, P. R., Gottschalk, L. B., Lopez, A. P., Pellicore, M. J., Evans, T., Davis, E., Atalar, M., Na, C. H., Rosson, G. D., Belchis, D., Milewski, M., Pandey, A. & Cutting, G. R., 2016, In : American Journal of Physiology - Lung Cellular and Molecular Physiology. 311, 6, p. L1170-L1182

Research output: Contribution to journalArticle

Cystic Fibrosis Transmembrane Conductance Regulator
Alanine
RNA Sequence Analysis
Sweat Glands
Madin Darby Canine Kidney Cells

Chronic exposure to cigarette smoke leads to activation of p21 (RAC1)-activated kinase 6 (PAK6) in non-small cell lung cancer cells

Raja, R., Sahasrabuddhe, N. A., Radhakrishnan, A., Syed, N., Solanki, H. S., Puttamallesh, V. N., Balaji, S. A., Nanjappa, V., Datta, K. K., Babu, N., Renuse, S., Patil, A. H., Izumchenko, E., Prasad, T. S. K., Chang, X., Rangarajan, A., Sidransky, D., Pandey, A., Gowda, H. & Chatterjee, A., 2016, In : Oncotarget. 7, 38, p. 61229-61245 17 p.

Research output: Contribution to journalArticle

p21-Activated Kinases
Non-Small Cell Lung Carcinoma
Smoke
Tobacco Products
Lung Neoplasms

Common errors in mass spectrometry-based analysis of post-translational modifications

Kim, M. S., Zhong, J. & Pandey, A., Mar 1 2016, In : Proteomics. 16, 5, p. 700-714 15 p.

Research output: Contribution to journalArticle

Post Translational Protein Processing
Mass spectrometry
Mass Spectrometry
Biological Phenomena
Proteome

Dysregulation of splicing proteins in head and neck squamous cell carcinoma

Radhakrishnan, A., Nanjappa, V., Raja, R., Sathe, G., Chavan, S., Nirujogi, R. S., Patil, A. H., Solanki, H., Renuse, S., Sahasrabuddhe, N. A., Mathur, P. P., Prasad, T. S. K., Kumar, P., Califano, J. A., Sidransky, D., Pandey, A., Gowda, H. & Chatterjee, A., Feb 1 2016, In : Cancer Biology and Therapy. 17, 2, p. 219-229 11 p.

Research output: Contribution to journalArticle

Protein Splicing
Protein Kinases
Cell Line
Phosphotransferases
Carcinoma, squamous cell of head and neck

How Does Chronic Cigarette Smoke Exposure Affect Human Skin? A Global Proteomics Study in Primary Human Keratinocytes

Rajagopalan, P., Nanjappa, V., Raja, R., Jain, A. P., Mangalaparthi, K. K., Sathe, G. J., Babu, N., Patel, K., Cavusoglu, N., Soeur, J., Pandey, A., Roy, N., Breton, L., Chatterjee, A., Misra, N. & Gowda, H., Nov 1 2016, In : OMICS A Journal of Integrative Biology. 20, 11, p. 615-626 12 p.

Research output: Contribution to journalArticle

Keratinocytes
Smoke
Tobacco Products
Proteomics
Skin
Sporozoites
Glyceraldehyde-3-Phosphate Dehydrogenases
Plasmodium
Malaria
Kupffer Cells

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

the CPTAC Investigators, Jul 28 2016, In : Cell. 166, 3, p. 755-765 11 p.

Research output: Contribution to journalArticle

Ovarian Neoplasms
Genes
Genome
Proteome
Proteomics

Loss of C9orf72 Enhances Autophagic Activity via Deregulated mTOR and TFEB Signaling

Ugolino, J., Ji, Y. J., Conchina, K., Chu, J., Nirujogi, R. S., Pandey, A., Brady, N. R., Hamacher-Brady, A. & Wang, J., Nov 1 2016, In : PLoS Genetics. 12, 11, e1006443

Research output: Contribution to journalArticle

Transcription Factors
transcription factors
autophagy
Autophagy
protein

Proteomic profiling of retinoblastoma by high resolution mass spectrometry

Danda, R., Ganapathy, K., Sathe, G., Madugundu, A. K., Ramachandran, S., Krishnan, U. M., Khetan, V., Rishi, P., Keshava Prasad, T. S., Pandey, A., Krishnakumar, S., Gowda, H. & Elchuri, S. V., Oct 26 2016, In : Clinical Proteomics. 13, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Retinoblastoma
Proteomics
Mass spectrometry
Mass Spectrometry
Proteins

PyQuant: A versatile framework for analysis of quantitative mass spectrometry data

Mitchell, C. J., Kim, M. S., Na, C. H. & Pandey, A., Aug 1 2016, In : Molecular and Cellular Proteomics. 15, 8, p. 2829-2838 10 p.

Research output: Contribution to journalArticle

Mass spectrometry
Mass Spectrometry
Proteomics
Pipelines
Ions

Synovial fluid proteome in rheumatoid arthritis

Bhattacharjee, M., Balakrishnan, L., Renuse, S., Advani, J., Goel, R., Sathe, G., Keshava Prasad, T. S., Nair, B., Jois, R., Shankar, S. & Pandey, A., Jun 5 2016, In : Clinical Proteomics. 13, 1, 13

Research output: Contribution to journalArticle

Synovial Fluid
Proteome
Rheumatoid Arthritis
Fluids
Proteins

Using quantitative seroproteomics to identify antibody biomarkers in pancreatic cancer

Jhaveri, D. T., Kim, M. S., Thompson, E. D., Huang, L., Sharma, R., Klein, A. P., Zheng, L., Le, D. T., Laheru, D. A., Pandey, A., Jaffee, E. M. & Anders, R. A., Mar 1 2016, In : Cancer immunology research. 4, 3, p. 225-233 9 p.

Research output: Contribution to journalArticle

Pancreatic Neoplasms
Biomarkers
Immunoprecipitation
Antibodies
Cancer Vaccines
2015

Ablation of Dicer leads to widespread perturbation of signaling pathways

Sahasrabuddhe, N. A., Huang, T. C., Kumar, P., Yang, Y., Ghosh, B., Leach, S. D., Chaerkady, R. & Pandey, A., Jun 14 2015, In : Biochemical and Biophysical Research Communications. 463, 3, p. 389-394 6 p.

Research output: Contribution to journalArticle

Phosphotyrosine
Ablation
MicroRNAs
Down-Regulation
Platelet-Derived Growth Factor alpha Receptor

Activating mutations in PIK3CA lead to widespread modulation of the tyrosine phosphoproteome

Zahari, M. S., Wu, X., Blair, B. G., Pinto, S. M., Nirujogi, R. S., Jelinek, C. A., Malhotra, R., Kim, M. S., Park, B. H. & Pandey, A., Sep 4 2015, In : Journal of Proteome Research. 14, 9, p. 3882-3891 10 p.

Research output: Contribution to journalArticle

Tyrosine
Modulation
Mutation
Phosphorylation
Phosphotransferases

A knowledgebase resource for interleukin-17 family mediated signaling

Sharma, J., Balakrishnan, L., Datta, K. K., Sahasrabuddhe, N. A., Khan, A. A., Sahu, A., Singhal, A., Getnet, D., Raju, R., Chatterjee, A., Gowda, H., Keshava Prasad, T. S., Shankar, S. & Pandey, A., Jun 16 2015, In : Journal of Cell Communication and Signaling. 9, 3, p. 291-296 6 p.

Research output: Contribution to journalArticle

Knowledge Bases
Interleukin-17
Cytokines
Ligands
Th17 Cells

A multi-omic analysis of human naïve CD4+ T cells

Mitchell, C. J. , Getnet, D. , Kim, M. S. , Manda, S. S. , Kumar, P. , Huang, T. C. , Pinto, S. M. , Nirujogi, R. S. , Iwasaki, M. , Shaw, P. G. , Wu, X. , Zhong, J. , Chaerkady, R. , Marimuthu, A. , Muthusamy, B. , Sahasrabuddhe, N. A. , Raju, R. , Bowman, C. , Danilova, L. , Cutler, J. & 15 others Kelkar, D. S., Drake, C. G., Prasad, T. S. K., Marchionni, L., Murakami, P. N., Scott, A. F., Shi, L., Thierry-Mieg, J., Thierry-Mieg, D., Irizarry, R., Cope, L., Ishihama, Y., Wang, C., Gowda, H. & Pandey, A., Nov 6 2015, (Accepted/In press) In : BMC Systems Biology.

Research output: Contribution to journalArticle

T-cells
T-Lymphocytes
RNA
Proteins
Genome

A network map of Interleukin-10 signaling pathway

Verma, R., Balakrishnan, L., Sharma, K., Khan, A. A., Advani, J., Gowda, H., Tripathy, S. P., Suar, M., Pandey, A., Gandotra, S., Prasad, T. S. K. & Shankar, S., Aug 8 2015, (Accepted/In press) In : Journal of Cell Communication and Signaling.

Research output: Contribution to journalArticle

Interleukin-10
Interleukin-10 Receptors
Cytokines
Leishmania donovani
Signal transduction

A pathway map of glutamate metabolism

Yelamanchi, S. D., Jayaram, S., Thomas, J. K., Gundimeda, S., Khan, A. A., Singhal, A., Keshava Prasad, T. S., Pandey, A., Somani, B. L. & Gowda, H., Dec 3 2015, (Accepted/In press) In : Journal of Cell Communication and Signaling. p. 1-7 7 p.

Research output: Contribution to journalArticle

Metabolism
Glutamic Acid
Enzymes
Post Translational Protein Processing
Gyrate Atrophy

A phosphoproteomic screen demonstrates differential dependence on HER3 for MAP kinase pathway activation by distinct PIK3CA mutations

Blair, B. G., Wu, X., Zahari, M. S., Mohseni, M., Cidado, J., Wong, H. Y., Beaver, J. A., Cochran, R. L., Zabransky, D. J., Croessmann, S., Chu, D., Toro, P. V., Cravero, K., Pandey, A. & Park, B. H., Jan 1 2015, In : Proteomics. 15, 2-3, p. 318-326 9 p.

Research output: Contribution to journalArticle

Phosphorylation
Phosphatidylinositol 3-Kinases
Phosphotransferases
Chemical activation
Mutation

Calcium calmodulin dependent kinase kinase 2 - A novel therapeutic target for gastric adenocarcinoma

Subbannayya, Y. , Syed, N. , Barbhuiya, M. A. , Raja, R. , Marimuthu, A. , Sahasrabuddhe, N. , Pinto, S. M. , Manda, S. S. , Renuse, S. , Manju, H. C. , Zameer, M. A. L. , Sharma, J. , Brait, M. , Srikumar, K. , Roa, J. C. , Kumar, M. V. , Kumar, K. V. V. , Prasad, T. S. K. , Ramaswamy, G. , Kumar, R. V. & 3 others Pandey, A., Gowda, H. & Chatterjee, A., Feb 1 2015, In : Cancer Biology and Therapy. 16, 2, p. 336-345 10 p.

Research output: Contribution to journalArticle

Calcium-Calmodulin-Dependent Protein Kinase Kinase
Stomach Neoplasms
Stomach
Calcium-Calmodulin-Dependent Protein Kinases
Adenocarcinoma

Chronic exposure to chewing tobacco selects for overexpression of stearoyl-CoA desaturase in normal oral keratinocytes

Nanjappa, V., Renuse, S., Sathe, G. J., Raja, R., Syed, N., Radhakrishnan, A., Subbannayya, T., Patil, A., Marimuthu, A., Sahasrabuddhe, N. A., Guerrero-Preston, R., Somani, B. L., Nair, B., Kundu, G. C., Prasad, T. K., Califano, J. A., Gowda, H., Sidransky, D., Pandey, A. & Chatterjee, A., Oct 30 2015, In : Cancer Biology and Therapy. 16, 11, p. 1593-1603 11 p.

Research output: Contribution to journalArticle

Stearoyl-CoA Desaturase
Smokeless Tobacco
Keratinocytes
Tobacco
Cell Proliferation

Comprehensive Proteomics Analysis of Glycosomes from Leishmania donovani

Jamdhade, M. D., Pawar, H., Chavan, S., Sathe, G., Umasankar, P. K., Mahale, K. N., Dixit, T., Madugundu, A. K., Prasad, T. S. K., Gowda, H., Pandey, A. & Patole, M. S., Mar 1 2015, In : OMICS A Journal of Integrative Biology. 19, 3, p. 157-170 14 p.

Research output: Contribution to journalArticle

Microbodies
Leishmania donovani
Proteomics
Macrophages
Visceral Leishmaniasis

Downregulation of S100 calcium binding protein A9 in esophageal squamous cell carcinoma

Pawar, H., Srikanth, S. M., Kashyap, M. K., Sathe, G., Chavan, S., Singal, M., Manju, H. C., Kumar, K. V. V., Vijayakumar, M., Sirdeshmukh, R., Pandey, A., Prasad, T. S. K., Gowda, H. & Kumar, R. V., 2015, In : Scientific World Journal. 2015, 325721

Research output: Contribution to journalArticle

Calcium-Binding Proteins
tumor
Tumors
Down-Regulation
calcium

Dysregulated iron homeostasis is strongly associated with multiorgan failure and early mortality in acute-on-chronic liver failure

Maras, J. S., Maiwall, R., Harsha, H. C., Das, S., Hussain, M. S., Kumar, C., Bihari, C., Rastogi, A., Kumar, M., Trehanpati, N., Sharma, S., Pandey, A. & Sarin, S. K., Apr 1 2015, In : Hepatology. 61, 4, p. 1306-1320 15 p.

Research output: Contribution to journalArticle

Homeostasis
Iron
Mortality
Fibrosis
Ceruloplasmin

Global and gene-specific DNA methylation pattern discriminates cholecystitis from gallbladder cancer patients in Chile

Kagohara, L. T., Schussel, J. L., Subbannayya, T., Sahasrabuddhe, N., Lebron, C., Brait, M., Maldonado, L., Valle, B. L., Pirini, F., Jahuira, M., Lopez, J., Letelier, P., Brebi-Mieville, P., Ili, C., Pandey, A., Chatterjee, A., Sidransky, D. & Guerrero-Preston, R., Jan 1 2015, In : Future Oncology. 11, 2, p. 233-249 17 p.

Research output: Contribution to journalArticle

Gallbladder Neoplasms
Cholecystitis
Chile
DNA Methylation
Methylation

Global phosphotyrosine survey in triple-negative breast cancer reveals activation of multiple tyrosine kinase signaling pathways

Wu, X. , Zahari, M. S. , Ma, B. , Liu, R. , Renuse, S. , Sahasrabuddhe, N. A. , Chen, L. , Chaerkady, R. , Kim, M. S. , Zhong, J. , Jelinek, C. , Barbhuiya, M. A. , Leal-Rojas, P. , Yang, Y. , Kashyap, M. K. , Marimuthu, A. , Ling, M. , Fackler, M. J. , Merino, V. , Zhang, Z. & 7 others Zahnow, C. A., Gabrielson, E., Stearns, V., Roa, J. C., Sukumar, S., Gill, P. S. & Pandey, A., 2015, In : Oncotarget. 6, 30, p. 29143-29160 18 p.

Research output: Contribution to journalArticle

Triple Negative Breast Neoplasms
Phosphotyrosine
Protein-Tyrosine Kinases
Breast Neoplasms
Antibodies, Monoclonal, Humanized

Identification of differentially expressed serum proteins in gastric adenocarcinoma

Subbannayya, Y., Mir, S. A., Renuse, S., Manda, S. S., Pinto, S. M., Puttamallesh, V. N., Solanki, H. S., Manju, H. C., Syed, N., Sharma, R., Christopher, R., Vijayakumar, M., Veerendra Kumar, K. V., Keshava Prasad, T. S., Ramaswamy, G., Kumar, R. V., Chatterjee, A., Pandey, A. & Gowda, H., Sep 8 2015, In : Journal of Proteomics. 127, p. 80-88 9 p.

Research output: Contribution to journalArticle

Stomach Neoplasms
Blood Proteins
Stomach
Adenocarcinoma
Biomarkers

Identification of miR-145 targets through an integrated omics analysis

Huang, T. C., Renuse, S., Pinto, S., Kumar, P., Yang, Y., Chaerkady, R., Godsey, B., Mendell, J. T., Halushka, M. K., Civin, C. I., Marchionni, L. & Pandey, A., Jan 1 2015, In : Molecular BioSystems. 11, 1, p. 197-207 11 p.

Research output: Contribution to journalArticle

MicroRNAs
Neoplasms
Down-Regulation
Gene Expression
Small Untranslated RNA

Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics

Zhang, X., Belkina, N., Jacob, H. K. C., Maity, T., Biswas, R., Venugopalan, A., Shaw, P. G., Kim, M. S., Chaerkady, R., Pandey, A. & Guha, U., Jan 1 2015, In : Proteomics. 15, 2-3, p. 340-355 16 p.

Research output: Contribution to journalArticle

Phosphorylation
Epidermal Growth Factor Receptor
Lung Neoplasms
Protein-Tyrosine Kinases
Phosphotransferases

Inhibition of Spleen Tyrosine Kinase Potentiates Paclitaxel-Induced Cytotoxicity in Ovarian Cancer Cells by Stabilizing Microtubules

Yu, Y., Gaillard, S., Phillip, J., Huang, T. C., Pinto, S., Tessarollo, N., Zhang, Z., Pandey, A., Wirtz, D., Ayhan, A., Davidson, B., Wang, T. L. & Shih, I. M., Jul 13 2015, In : Cancer Cell. 28, 1, p. 82-96 15 p.

Research output: Contribution to journalArticle

Paclitaxel
Microtubules
Ovarian Neoplasms
Gene Knockdown Techniques
Syk Kinase

Integrated analysis of CRLF2 signaling in acute lymphoblastic leukemia identifies Polo-like kinase 1 as a potential therapeutic target

Huang, T. C., Cutler, J., Bharne, S., Zhong, J., Weinstock, D., Tyner, J., Gojo, I., Civin, C. & Pandey, A., May 1 2015, In : Leukemia and Lymphoma. 56, 5, p. 1524-1527 4 p.

Research output: Contribution to journalArticle

Xenograft Model Antitumor Assays
Proto-Oncogene Proteins
Molecular Targeted Therapy
Animal Disease Models
Cell Cycle Proteins

LC-MS-based serum metabolomic analysis reveals dysregulation of phosphatidylcholines in esophageal squamous cell carcinoma

Mir, S. A., Rajagopalan, P., Jain, A. P., Khan, A. A., Datta, K. K., Mohan, S. V., Lateef, S. S., Sahasrabuddhe, N., Somani, B. L., Keshava Prasad, T. S., Chatterjee, A., Veerendra Kumar, K. V., VijayaKumar, M., Kumar, R. V., Gundimeda, S., Pandey, A. & Gowda, H., Sep 8 2015, In : Journal of Proteomics. 127, p. 96-102 7 p.

Research output: Contribution to journalArticle

Metabolomics
Phosphatidylcholines
Serum
Metabolites
Metabolism