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2017

Differential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis

Cutler, J. A., Tahir, R., Sreenivasamurthy, S. K., Mitchell, C., Renuse, S., Nirujogi, R. S., Patil, A. H., Heydarian, M., Wong, X., Wu, X., Huang, T. C., Kim, M. S., Reddy, K. L. & Pandey, A. Mar 28 2017 (Accepted/In press) In : Leukemia.

Research output: Research - peer-reviewArticle

Proteins
Biotinylation
Cytoskeleton
Publications
Leukemia
VDJ Recombinases
Genetic Recombination
Catalytic Domain
DNA
Genes

Homer1a drives homeostatic scaling-down of excitatory synapses during sleep

Diering, G. H., Nirujogi, R. S., Roth, R. H., Worley, P. F., Pandey, A. & Huganir, R. L. Feb 3 2017 In : Science. 355, 6324, p. 511-515 5 p.

Research output: Research - peer-reviewArticle

Synapses
Sleep
Drive
Metabotropic Glutamate 5 Receptor
Neuronal Plasticity

Human adenine nucleotide translocases physically and functionally interact with respirasomes

Lu, Y. W., Acoba, M. G., Selvaraju, K., Huang, T. C., Nirujogi, R. S., Sathe, G., Pandey, A. & Claypool, S. M. Jun 1 2017 In : Molecular Biology of the Cell. 28, 11, p. 1489-1506 18 p.

Research output: Research - peer-reviewArticle

ATP Translocases Mitochondrial ADP
Oxidative Phosphorylation
Protein Isoforms
Adenosine Diphosphate
Adenosine Triphosphate

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes

Prasad, T. S. K. , Mohanty, A. K. , Kumar, M. , Sreenivasamurthy, S. K. , Dey, G. , Nirujogi, R. S. , Pinto, S. M. , Madugundu, A. K. , Patil, A. H. , Advani, J. , Manda, S. S. , Gupta, M. K. , Dwivedi, S. B. , Kelkar, D. S. , Hall, B. , Jiang, X. , Peery, A. , Rajagopalan, P. , Yelamanchi, S. D. , Solanki, H. S. & 22 others Raja, R., Sathe, G. J., Chavan, S., Verma, R., Patel, K. M., Jain, A. P., Syed, N., Datta, K. K., Khan, A. A., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, C. J., Na, C. H., Kumar, N., Sinnis, P., Sharakhov, I. V., Wang, C., Gowda, H., Tu, Z., Kumar, A. & Pandey, A. Jan 1 2017 In : Genome Research. 27, 1, p. 133-144 12 p.

Research output: Research - peer-reviewArticle

Proteomics
Genome
Genes
Proteins
Proteome

Mass Spectrometry Reveals Respiratory Viral Infection Biomarkers

Na, C. H. & Pandey, A. Apr 1 2017 In : EBioMedicine. 18, p. 21-22 2 p.

Research output: Research - peer-reviewComment/debate

Mosquito-Borne Diseases and Omics: Tissue-Restricted Expression and Alternative Splicing Revealed by Transcriptome Profiling of Anopheles stephensi

Sreenivasamurthy, S. K., Madugundu, A. K., Patil, A. H., Dey, G., Mohanty, A. K., Kumar, M., Patel, K., Wang, C., Kumar, A., Pandey, A. & Prasad, T. S. K. Aug 1 2017 In : OMICS A Journal of Integrative Biology. 21, 8, p. 488-497 10 p.

Research output: Research - peer-reviewArticle

Anopheles
Alternative Splicing
Gene Expression Profiling
Culicidae
Malaria

Moving to Translational Proteomics

Pandey, A. Mar 1 2017 In : Proteomics. 17, 6, 1770042

Research output: Research - peer-reviewEditorial

Next-Generation Sequencing Reveals Novel Mutations in X-linked Intellectual Disability

Muthusamy, B., Selvan, L. D. N., Nguyen, T. T., Manoj, J., Stawiski, E. W., Jaiswal, B. S., Wang, W., Raja, R., Ramprasad, V. L., Gupta, R., Murugan, S., Kadandale, J. S., Keshava Prasad, T. S., Reddy, K., Peterson, A., Pandey, A., Seshagiri, S., Girimaji, S. C. & Gowda, H. May 1 2017 In : OMICS A Journal of Integrative Biology. 21, 5, p. 295-303 9 p.

Research output: Research - peer-reviewArticle

Intellectual Disability
Mutation
Genes
Health
Phenotype

Proteomic composition and immunomodulatory properties of urinary bladder matrix scaffolds in homeostasis and injury

Sadtler, K., Sommerfeld, S. D., Wolf, M. T., Wang, X., Majumdar, S., Chung, L., Kelkar, D. S., Pandey, A. & Elisseeff, J. H. Feb 28 2017 (Accepted/In press) In : Seminars in Immunology.

Research output: Research - peer-reviewArticle

Proteomics
Urinary Bladder
Homeostasis
Wounds and Injuries
Biocompatible Materials

Quantitative Proteomic and Phosphoproteomic Analysis of H37Ra and H37Rv Strains of Mycobacterium tuberculosis

Verma, R., Pinto, S. M., Patil, A. H., Advani, J., Subba, P., Kumar, M., Sharma, J., Dey, G., Ravikumar, R., Buggi, S., Satishchandra, P., Sharma, K., Suar, M., Tripathy, S. P., Chauhan, D. S., Gowda, H., Pandey, A., Gandotra, S. & Prasad, T. S. K. Apr 7 2017 In : Journal of Proteome Research. 16, 4, p. 1632-1645 14 p.

Research output: Research - peer-reviewArticle

Mycobacterium tuberculosis
Proteomics
Proteins
Virulence
Phosphorylation

Quantitative tyrosine phosphoproteomics of Epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response

Zhang, X., Maity, T., Kashyap, M. K., Bansal, M., Venugopalan, A., Singh, S., Awasthi, S., Marimuthu, A., Jacob, H. K. C., Belkina, N., Pitts, S., Cultraro, C. M., Gao, S., Kirkali, G., Biswas, R., Chaerkady, R., Califano, A., Pandey, A. & Guha, U. May 1 2017 In : Molecular and Cellular Proteomics. 16, 5, p. 891-910 20 p.

Research output: Research - peer-reviewArticle

Epidermal Growth Factor Receptor
Protein-Tyrosine Kinases
Tyrosine
Biomarkers
Therapeutics

Small molecule inhibitor screening identifified HSP90 inhibitor 17-AAG as potential therapeutic agent for gallbladder cancer

Weber, H., Valbuena, J. R., Barbhuiya, M. A., Stein, S., Kunkel, H., García, P., Bizama, C., Riquelme, I., Espinoza, J. A., Kurtz, S. E., Tyner, J. W., Calderon, J. F., Corvalán, A. H., Grez, M., Pandey, A., Leal-Rojas, P. & Roa, J. C. 2017 In : Oncotarget. 8, 16, p. 26169-26184 16 p.

Research output: Research - peer-reviewArticle

tanespimycin
Gallbladder Neoplasms
Therapeutics
Neoplasms
In Vitro Techniques

The non-receptor tyrosine kinase TNK2/ACK1 is a novel therapeutic target in triple negative breast cancer

Wu, X., Zahari, M. S., Renuse, S., Kelkar, D. S., Bharbuiya, M. A., Rojas, P. L., Stearns, V., Gabrielson, E., Malla, P., Sukumar, S., Mahajan, N. P. & Pandey, A. 2017 In : Oncotarget. 8, 2, p. 2971-2983 13 p.

Research output: Research - peer-reviewArticle

Triple Negative Breast Neoplasms
Protein-Tyrosine Kinases
Breast Neoplasms
Therapeutics
Neoplasms

Toward the human cellular microRNAome

McCall, M. N., Kim, M. S., Adil, M., Patil, A. H., Lu, Y., Mitchell, C. J., Leal-Rojas, P., Xu, J., Kumar, M., Dawson, V. L., Dawson, T. M., Baras, A. S., Rosenberg, A. Z., Arking, D. E., Burns, K. H., Pandey, A. & Halushka, M. K. Oct 1 2017 In : Genome Research. 27, 10, p. 1769-1781 13 p.

Research output: Research - peer-reviewArticle

MicroRNAs
RNA
Cell Line
Neoplasms
Regulator Genes

Understanding Epstein-barr virus life cycle with proteomics: A temporal analysis of ubiquitination during virus reactivation

Lv, D. W., Zhong, J., Zhang, K., Pandey, A. & Li, R. Jan 1 2017 In : OMICS A Journal of Integrative Biology. 21, 1, p. 27-37 11 p.

Research output: Research - peer-reviewArticle

Ubiquitination
Life Cycle Stages
Human Herpesvirus 4
Proteomics
Viruses

Whole Genome Sequencing of Mycobacterium tuberculosis Isolates from Extrapulmonary Sites

Sharma, K., Verma, R., Advani, J., Chatterjee, O., Solanki, H. S., Sharma, A., Varma, S., Modi, M., Ray, P., Mukherjee, K. K., Sharma, M., Dhillion, M. S., Suar, M., Chatterjee, A., Pandey, A., Prasad, T. S. K. & Gowda, H. Jul 1 2017 In : OMICS A Journal of Integrative Biology. 21, 7, p. 413-425 13 p.

Research output: Research - peer-reviewArticle

Mycobacterium tuberculosis
Genome
Genes
Pharmaceutical Preparations
Tuberculosis
2016

A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma

Radhakrishnan, A. , Nanjappa, V. , Raja, R. , Sathe, G. , Puttamallesh, V. N. , Jain, A. P. , Pinto, S. M. , Balaji, S. A. , Chavan, S. , Sahasrabuddhe, N. A. , Mathur, P. P. , Kumar, M. M. , Prasad, T. S. K. , Santosh, V. , Sukumar, G. , Califano, J. A. , Rangarajan, A. , Sidransky, D. , Pandey, A. , Gowda, H. & 1 others Chatterjee, A. Oct 31 2016 In : Scientific Reports. 6, 36132

Research output: Research - peer-reviewArticle

Phosphotransferases
Therapeutics
Carcinoma, squamous cell of head and neck
Neoplasms
Cell Line

A sequence upstream of canonical PDZ-binding motif within CFTR COOH-terminus enhances NHERF1 interaction

Sharma, N., LaRusch, J., Sosnay, P. R., Gottschalk, L. B., Lopez, A. P., Pellicore, M. J., Evans, T., Davis, E., Atalar, M., Na, C. H., Rosson, G. D., Belchis, D., Milewski, M., Pandey, A. & Cutting, G. R. 2016 In : American Journal of Physiology - Lung Cellular and Molecular Physiology. 311, 6, p. L1170-L1182

Research output: Research - peer-reviewArticle

Cystic Fibrosis Transmembrane Conductance Regulator
Alanine
Membranes
Therapeutics
RNA Sequence Analysis

Chronic exposure to cigarette smoke leads to activation of p21 (RAC1)-activated kinase 6 (PAK6) in non-small cell lung cancer cells

Raja, R., Sahasrabuddhe, N. A., Radhakrishnan, A., Syed, N., Solanki, H. S., Puttamallesh, V. N., Balaji, S. A., Nanjappa, V., Datta, K. K., Babu, N., Renuse, S., Patil, A. H., Izumchenko, E., Prasad, T. S. K., Chang, X., Rangarajan, A., Sidransky, D., Pandey, A., Gowda, H. & Chatterjee, A. 2016 In : Oncotarget. 7, 38, p. 61229-61245 17 p.

Research output: Research - peer-reviewArticle

p21-Activated Kinases
Non-Small Cell Lung Carcinoma
Smoke
Tobacco Products
Therapeutics

Common errors in mass spectrometry-based analysis of post-translational modifications

Kim, M. S., Zhong, J. & Pandey, A. Mar 1 2016 In : Proteomics. 16, 5, p. 700-714 15 p.

Research output: Research - peer-reviewArticle

Post Translational Protein Processing
Mass Spectrometry
Mass spectrometry
Biological Phenomena
Proteome

Dysregulation of splicing proteins in head and neck squamous cell carcinoma

Radhakrishnan, A., Nanjappa, V., Raja, R., Sathe, G., Chavan, S., Nirujogi, R. S., Patil, A. H., Solanki, H., Renuse, S., Sahasrabuddhe, N. A., Mathur, P. P., Prasad, T. S. K., Kumar, P., Califano, J. A., Sidransky, D., Pandey, A., Gowda, H. & Chatterjee, A. Feb 1 2016 In : Cancer Biology and Therapy. 17, 2, p. 219-229 11 p.

Research output: Research - peer-reviewArticle

Protein Splicing
Carcinoma, squamous cell of head and neck
Protein Kinases
Cell Line
Phosphotransferases

How Does Chronic Cigarette Smoke Exposure Affect Human Skin? A Global Proteomics Study in Primary Human Keratinocytes

Rajagopalan, P., Nanjappa, V., Raja, R., Jain, A. P., Mangalaparthi, K. K., Sathe, G. J., Babu, N., Patel, K., Cavusoglu, N., Soeur, J., Pandey, A., Roy, N., Breton, L., Chatterjee, A., Misra, N. & Gowda, H. Nov 1 2016 In : OMICS A Journal of Integrative Biology. 20, 11, p. 615-626 12 p.

Research output: Research - peer-reviewArticle

Keratinocytes
Smoke
Tobacco Products
Proteomics
Skin
Sporozoites
Glyceraldehyde-3-Phosphate Dehydrogenases
Plasmodium
Malaria
Liver

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

Zhang, H. , Liu, T. , Zhang, Z. , Payne, S. H. , Zhang, B. , McDermott, J. E. , Zhou, J. Y. , Petyuk, V. A. , Chen, L. , Ray, D. , Sun, S. , Yang, F. , Chen, L. , Wang, J. , Shah, P. , Cha, S. W. , Aiyetan, P. , Woo, S. , Tian, Y. , Gritsenko, M. A. & 87 others Clauss, T. R., Choi, C., Monroe, M. E., Thomas, S., Nie, S., Wu, C., Moore, R. J., Yu, K. H., Tabb, D. L., Fenyö, D., Vineet, V., Wang, Y., Rodriguez, H., Boja, E. S., Hiltke, T., Rivers, R. C., Sokoll, L., Zhu, H., Shih, I. M., Cope, L., Pandey, A., Zhang, B., Snyder, M. P., Levine, D. A., Smith, R. D., Chan, D. W., Rodland, K. D., Carr, S. A., Gillette, M. A., Klauser, K. R., Kuhn, E., Mani, D. R., Mertins, P., Ketchum, K. A., Thangudu, R., Cai, S., Oberti, M., Paulovich, A. G., Whiteaker, J. R., Edwards, N. J., McGarvey, P. B., Madhavan, S., Wang, P., Chan, D. W., Pandey, A., Shih, I. M., Zhang, H., Zhang, Z., Zhu, H., Cope, L., Whiteley, G. A., Skates, S. J., White, F. M., Levine, D. A., Boja, E. S., Kinsinger, C. R., Hiltke, T., Mesri, M., Rivers, R. C., Rodriguez, H., Shaw, K. M., Stein, S. E., Fenyo, D., Liu, T., McDermott, J. E., Payne, S. H., Rodland, K. D., Smith, R. D., Rudnick, P., Snyder, M., Zhao, Y., Chen, X., Ransohoff, D. F., Hoofnagle, A. N., Liebler, D. C., Sanders, M. E., Shi, Z., Slebos, R. J. C., Tabb, D. L., Zhang, B., Zimmerman, L. J., Wang, Y., Davies, S. R., Ding, L., Ellis, M. J. C., Townsend, R. R. & the CPTAC Investigators Jul 28 2016 In : Cell. 166, 3, p. 755-765 11 p.

Research output: Research - peer-reviewArticle

Ovarian Neoplasms
Genome
Neoplasms
Proteogenomics
Genes

Loss of C9orf72 Enhances Autophagic Activity via Deregulated mTOR and TFEB Signaling

Ugolino, J., Ji, Y. J., Conchina, K., Chu, J., Nirujogi, R. S., Pandey, A., Brady, N. R., Hamacher-Brady, A. & Wang, J. Nov 1 2016 In : PLoS Genetics. 12, 11, e1006443

Research output: Research - peer-reviewArticle

transcription factors
proteins
Transcription Factors
Proteins
loss

Proteomic profiling of retinoblastoma by high resolution mass spectrometry

Danda, R., Ganapathy, K., Sathe, G., Madugundu, A. K., Ramachandran, S., Krishnan, U. M., Khetan, V., Rishi, P., Keshava Prasad, T. S., Pandey, A., Krishnakumar, S., Gowda, H. & Elchuri, S. V. Oct 26 2016 In : Clinical Proteomics. 13, 1, p. 1-13 13 p.

Research output: Research - peer-reviewArticle

Mass spectrometry
Proteins
Proteomics
Retinoblastoma
Mass Spectrometry

PyQuant: A versatile framework for analysis of quantitative mass spectrometry data

Mitchell, C. J., Kim, M. S., Na, C. H. & Pandey, A. Aug 1 2016 In : Molecular and Cellular Proteomics. 15, 8, p. 2829-2838 10 p.

Research output: Research - peer-reviewArticle

Mass spectrometry
Mass Spectrometry
Pipelines
Ions
Proteomics

Synovial fluid proteome in rheumatoid arthritis

Bhattacharjee, M., Balakrishnan, L., Renuse, S., Advani, J., Goel, R., Sathe, G., Keshava Prasad, T. S., Nair, B., Jois, R., Shankar, S. & Pandey, A. Jun 5 2016 In : Clinical Proteomics. 13, 1, 13

Research output: Research - peer-reviewArticle

Synovial Fluid
Proteome
Rheumatoid Arthritis
Proteins
Fluids

Using quantitative seroproteomics to identify antibody biomarkers in pancreatic cancer

Jhaveri, D. T., Kim, M. S., Thompson, E. D., Huang, L., Sharma, R., Klein, A. P., Zheng, L., Le, D. T., Laheru, D. A., Pandey, A., Jaffee, E. M. & Anders, R. A. Mar 1 2016 In : Cancer immunology research. 4, 3, p. 225-233 9 p.

Research output: Research - peer-reviewArticle

Pancreatic Neoplasms
Biomarkers
Antibodies
Immunoprecipitation
Serum
2015

Ablation of Dicer leads to widespread perturbation of signaling pathways

Sahasrabuddhe, N. A., Huang, T. C., Kumar, P., Yang, Y., Ghosh, B., Leach, S. D., Chaerkady, R. & Pandey, A. Jun 14 2015 In : Biochemical and Biophysical Research Communications. 463, 3, p. 389-394 6 p.

Research output: Research - peer-reviewArticle

Phosphotyrosine
Neoplasms
Ablation
MicroRNAs
Down-Regulation

Activating mutations in PIK3CA lead to widespread modulation of the tyrosine phosphoproteome

Zahari, M. S., Wu, X., Blair, B. G., Pinto, S. M., Nirujogi, R. S., Jelinek, C. A., Malhotra, R., Kim, M. S., Park, B. H. & Pandey, A. Sep 4 2015 In : Journal of Proteome Research. 14, 9, p. 3882-3891 10 p.

Research output: Research - peer-reviewArticle

Tyrosine
Mutation
Modulation
Phosphotransferases
Phosphorylation

A knowledgebase resource for interleukin-17 family mediated signaling

Sharma, J., Balakrishnan, L., Datta, K. K., Sahasrabuddhe, N. A., Khan, A. A., Sahu, A., Singhal, A., Getnet, D., Raju, R., Chatterjee, A., Gowda, H., Keshava Prasad, T. S., Shankar, S. & Pandey, A. Jun 16 2015 In : Journal of Cell Communication and Signaling. 9, 3, p. 291-296 6 p.

Research output: Research - peer-reviewArticle

Knowledge Bases
Interleukin-17
Cytokines
Ligands
Th17 Cells

A multi-omic analysis of human naïve CD4+ T cells

Mitchell, C. J. , Getnet, D. , Kim, M. S. , Manda, S. S. , Kumar, P. , Huang, T. C. , Pinto, S. M. , Nirujogi, R. S. , Iwasaki, M. , Shaw, P. G. , Wu, X. , Zhong, J. , Chaerkady, R. , Marimuthu, A. , Muthusamy, B. , Sahasrabuddhe, N. A. , Raju, R. , Bowman, C. , Danilova, L. , Cutler, J. & 15 others Kelkar, D. S., Drake, C. G., Prasad, T. S. K., Marchionni, L., Murakami, P. N., Scott, A. F., Shi, L., Thierry-Mieg, J., Thierry-Mieg, D., Irizarry, R., Cope, L., Ishihama, Y., Wang, C., Gowda, H. & Pandey, A. Nov 6 2015 (Accepted/In press) In : BMC Systems Biology.

Research output: Research - peer-reviewArticle

T-cells
Human
T-Lymphocytes
Proteins
Genome

A network map of Interleukin-10 signaling pathway

Verma, R., Balakrishnan, L., Sharma, K., Khan, A. A., Advani, J., Gowda, H., Tripathy, S. P., Suar, M., Pandey, A., Gandotra, S., Prasad, T. S. K. & Shankar, S. Aug 8 2015 (Accepted/In press) In : Journal of Cell Communication and Signaling.

Research output: Research - peer-reviewArticle

Interleukin-10
Cytokines
Molecules
Interleukin-10 Receptors
Leishmania donovani

A pathway map of glutamate metabolism

Yelamanchi, S. D., Jayaram, S., Thomas, J. K., Gundimeda, S., Khan, A. A., Singhal, A., Keshava Prasad, T. S., Pandey, A., Somani, B. L. & Gowda, H. Dec 3 2015 (Accepted/In press) In : Journal of Cell Communication and Signaling. p. 1-7 7 p.

Research output: Research - peer-reviewArticle

Metabolism
Glutamic Acid
Enzymes
Proteins
Post Translational Protein Processing

A phosphoproteomic screen demonstrates differential dependence on HER3 for MAP kinase pathway activation by distinct PIK3CA mutations

Blair, B. G., Wu, X., Zahari, M. S., Mohseni, M., Cidado, J., Wong, H. Y., Beaver, J. A., Cochran, R. L., Zabransky, D. J., Croessmann, S., Chu, D., Toro, P. V., Cravero, K., Pandey, A. & Park, B. H. Jan 1 2015 In : Proteomics. 15, 2-3, p. 318-326 9 p.

Research output: Research - peer-reviewArticle

Phosphorylation
Phosphatidylinositol 3-Kinases
Phosphotransferases
Chemical activation
Mutation

Calcium calmodulin dependent kinase kinase 2 - A novel therapeutic target for gastric adenocarcinoma

Subbannayya, Y. , Syed, N. , Barbhuiya, M. A. , Raja, R. , Marimuthu, A. , Sahasrabuddhe, N. , Pinto, S. M. , Manda, S. S. , Renuse, S. , Manju, H. C. , Zameer, M. A. L. , Sharma, J. , Brait, M. , Srikumar, K. , Roa, J. C. , Kumar, M. V. , Kumar, K. V. V. , Prasad, T. S. K. , Ramaswamy, G. , Kumar, R. V. & 3 others Pandey, A., Gowda, H. & Chatterjee, A. Feb 1 2015 In : Cancer Biology and Therapy. 16, 2, p. 336-345 10 p.

Research output: Research - peer-reviewArticle

Calcium-Calmodulin-Dependent Protein Kinase Kinase
Stomach Neoplasms
Stomach
Adenocarcinoma
Therapeutics

Chronic exposure to chewing tobacco selects for overexpression of stearoyl-CoA desaturase in normal oral keratinocytes

Nanjappa, V., Renuse, S., Sathe, G. J., Raja, R., Syed, N., Radhakrishnan, A., Subbannayya, T., Patil, A., Marimuthu, A., Sahasrabuddhe, N. A., Guerrero-Preston, R., Somani, B. L., Nair, B., Kundu, G. C., Prasad, T. K., Califano, J. A., Gowda, H., Sidransky, D., Pandey, A. & Chatterjee, A. Oct 30 2015 In : Cancer Biology and Therapy. 16, 11, p. 1593-1603 11 p.

Research output: Research - peer-reviewArticle

Stearoyl-CoA Desaturase
Smokeless Tobacco
Keratinocytes
Tobacco
Proteins

Comprehensive Proteomics Analysis of Glycosomes from Leishmania donovani

Jamdhade, M. D., Pawar, H., Chavan, S., Sathe, G., Umasankar, P. K., Mahale, K. N., Dixit, T., Madugundu, A. K., Prasad, T. S. K., Gowda, H., Pandey, A. & Patole, M. S. Mar 1 2015 In : OMICS A Journal of Integrative Biology. 19, 3, p. 157-170 14 p.

Research output: Research - peer-reviewArticle

Microbodies
Leishmania donovani
Proteomics
Proteins
Macrophages

Downregulation of S100 calcium binding protein A9 in esophageal squamous cell carcinoma

Pawar, H., Srikanth, S. M., Kashyap, M. K., Sathe, G., Chavan, S., Singal, M., Manju, H. C., Kumar, K. V. V., Vijayakumar, M., Sirdeshmukh, R., Pandey, A., Prasad, T. S. K., Gowda, H. & Kumar, R. V. 2015 In : Scientific World Journal. 2015, 325721

Research output: Research - peer-reviewArticle

Calcium-Binding Proteins
Down-Regulation
Neoplasms
Esophageal Squamous Cell Carcinoma
Tumors

Dysregulated iron homeostasis is strongly associated with multiorgan failure and early mortality in acute-on-chronic liver failure

Maras, J. S., Maiwall, R., Harsha, H. C., Das, S., Hussain, M. S., Kumar, C., Bihari, C., Rastogi, A., Kumar, M., Trehanpati, N., Sharma, S., Pandey, A. & Sarin, S. K. Apr 1 2015 In : Hepatology. 61, 4, p. 1306-1320 15 p.

Research output: Research - peer-reviewArticle

Homeostasis
Iron
Mortality
Acute-On-Chronic Liver Failure
Fibrosis

Global and gene-specific DNA methylation pattern discriminates cholecystitis from gallbladder cancer patients in Chile

Kagohara, L. T., Schussel, J. L., Subbannayya, T., Sahasrabuddhe, N., Lebron, C., Brait, M., Maldonado, L., Valle, B. L., Pirini, F., Jahuira, M., Lopez, J., Letelier, P., Brebi-Mieville, P., Ili, C., Pandey, A., Chatterjee, A., Sidransky, D. & Guerrero-Preston, R. Jan 1 2015 In : Future Oncology. 11, 2, p. 233-249 17 p.

Research output: Research - peer-reviewArticle

Gallbladder Neoplasms
Cholecystitis
Chile
DNA Methylation
Genes

Global phosphotyrosine survey in triple-negative breast cancer reveals activation of multiple tyrosine kinase signaling pathways

Wu, X. , Zahari, M. S. , Ma, B. , Liu, R. , Renuse, S. , Sahasrabuddhe, N. A. , Chen, L. , Chaerkady, R. , Kim, M. S. , Zhong, J. , Jelinek, C. , Barbhuiya, M. A. , Leal-Rojas, P. , Yang, Y. , Kashyap, M. K. , Marimuthu, A. , Ling, M. , Fackler, M. J. , Merino, V. , Zhang, Z. & 7 others Zahnow, C. A., Gabrielson, E., Stearns, V., Roa, J. C., Sukumar, S., Gill, P. S. & Pandey, A. 2015 In : Oncotarget. 6, 30, p. 29143-29160 18 p.

Research output: Research - peer-reviewArticle

Triple Negative Breast Neoplasms
Phosphotyrosine
Protein-Tyrosine Kinases
Surveys and Questionnaires
Breast Neoplasms

Identification of differentially expressed serum proteins in gastric adenocarcinoma

Subbannayya, Y., Mir, S. A., Renuse, S., Manda, S. S., Pinto, S. M., Puttamallesh, V. N., Solanki, H. S., Manju, H. C., Syed, N., Sharma, R., Christopher, R., Vijayakumar, M., Veerendra Kumar, K. V., Keshava Prasad, T. S., Ramaswamy, G., Kumar, R. V., Chatterjee, A., Pandey, A. & Gowda, H. Sep 8 2015 In : Journal of Proteomics. 127, p. 80-88 9 p.

Research output: Research - peer-reviewArticle

Stomach Neoplasms
Blood Proteins
Stomach
Adenocarcinoma
Proteins

Identification of miR-145 targets through an integrated omics analysis

Huang, T. C., Renuse, S., Pinto, S., Kumar, P., Yang, Y., Chaerkady, R., Godsey, B., Mendell, J. T., Halushka, M. K., Civin, C. I., Marchionni, L. & Pandey, A. Jan 1 2015 In : Molecular BioSystems. 11, 1, p. 197-207 11 p.

Research output: Research - peer-reviewArticle

MicroRNAs
Neoplasms
Down-Regulation
Gene Expression
Small Untranslated RNA

Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics

Zhang, X., Belkina, N., Jacob, H. K. C., Maity, T., Biswas, R., Venugopalan, A., Shaw, P. G., Kim, M. S., Chaerkady, R., Pandey, A. & Guha, U. Jan 1 2015 In : Proteomics. 15, 2-3, p. 340-355 16 p.

Research output: Research - peer-reviewArticle

Epidermal Growth Factor Receptor
Lung Neoplasms
Phosphorylation
Adenocarcinoma of lung
Protein-Tyrosine Kinases

Inhibition of Spleen Tyrosine Kinase Potentiates Paclitaxel-Induced Cytotoxicity in Ovarian Cancer Cells by Stabilizing Microtubules

Yu, Y., Gaillard, S., Phillip, J., Huang, T. C., Pinto, S., Tessarollo, N., Zhang, Z., Pandey, A., Wirtz, D., Ayhan, A., Davidson, B., Wang, T. L. & Shih, I. M. Jul 13 2015 In : Cancer Cell. 28, 1, p. 82-96 15 p.

Research output: Research - peer-reviewArticle

Paclitaxel
Microtubules
Ovarian Neoplasms
Syk Kinase
Neoplasms

Integrated analysis of CRLF2 signaling in acute lymphoblastic leukemia identifies Polo-like kinase 1 as a potential therapeutic target

Huang, T. C., Cutler, J., Bharne, S., Zhong, J., Weinstock, D., Tyner, J., Gojo, I., Civin, C. & Pandey, A. May 1 2015 In : Leukemia and Lymphoma. 56, 5, p. 1524-1527 4 p.

Research output: Research - peer-reviewArticle

LC-MS-based serum metabolomic analysis reveals dysregulation of phosphatidylcholines in esophageal squamous cell carcinoma

Mir, S. A., Rajagopalan, P., Jain, A. P., Khan, A. A., Datta, K. K., Mohan, S. V., Lateef, S. S., Sahasrabuddhe, N., Somani, B. L., Keshava Prasad, T. S., Chatterjee, A., Veerendra Kumar, K. V., VijayaKumar, M., Kumar, R. V., Gundimeda, S., Pandey, A. & Gowda, H. Sep 8 2015 In : Journal of Proteomics. 127, p. 96-102 7 p.

Research output: Research - peer-reviewArticle

Metabolomics
Phosphatidylcholines
Serum
Esophageal Squamous Cell Carcinoma
Epithelial Cells