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2017

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging

Xing, F., Prince, J. L., Stone, M., Wedeen, V. J., El Fakhri, G. & Woo, J., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cine Magnetic Resonance Imaging
tongue
Atlases
Magnetic resonance
Tongue

Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans

Gonzalez Caldito, N., Antony, B., He, Y., Lang, A., Nguyen, J., Rothman, A., Ogbuokiri, E., Avornu, A., Balcer, L., Frohman, E., Frohman, T. C., Bhargava, P., Prince, J. L., Calabresi, P. & Saidha, S., Dec 15 2017, (Accepted/In press) In : Current Eye Research. p. 1-9 9 p.

Research output: Contribution to journalArticle

Retinaldehyde
Optical Coherence Tomography
Multiple Sclerosis
Nerve Fibers
Ganglia

A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics

Ganpule, S., Daphalapurkar, N. P., Ramesh, K. T., Knutsen, A. K., Pham, D. L., Bayly, P. V. & Prince, J. L., Jul 1 2017, In : Journal of Neurotrauma. 34, 13, p. 2154-2166 13 p.

Research output: Contribution to journalArticle

Head
Brain
Wounds and Injuries
Diffuse Axonal Injury
Limbic System

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dura Mater
Magnetic resonance
magnetic resonance
Brain
Spinal Cord

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J., 2017, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138. 1013813

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
scanners
Software
tomography

Cross contrast multi-channel image registration using image synthesis for MR brain images

Chen, M., Carass, A., Jog, A., Lee, J., Roy, S. & Prince, J. L., Feb 1 2017, In : Medical Image Analysis. 36, p. 2-14 13 p.

Research output: Contribution to journalArticle

Image registration
Brain
Image fusion
Atlases
Proxy

Disease-modifying therapies modulate retinal atrophy in multiple sclerosis: A retrospective study

Button, J., Al-Louzi, O., Lang, A., Bhargava, P., Newsome, S., Frohman, T., Balcer, L. J., Frohman, E. M., Prince, J. L., Calabresi, P. & Saidha, S., Feb 7 2017, In : Neurology. 88, 6, p. 525-532 8 p.

Research output: Contribution to journalArticle

Optical Coherence Tomography
Multiple Sclerosis
Atrophy
Relapsing-Remitting Multiple Sclerosis
Retrospective Studies

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Labels
templates
Labeling
marking

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients

Lang, A., Carass, A., Bittner, A. K., Ying, H. S. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371M

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Retinitis Pigmentosa
Optical tomography
Optical Coherence Tomography
pathology
Pathology

Incompressible phase registration for motion estimation from tagged magnetic resonance images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., 2017, Reconstruction, Segmentation, and Analysis of Medical Images - 1st International Workshops, RAMBO 2016 and HVSMR 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Springer Verlag, Vol. 10129 LNCS. p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10129 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic Resonance Image
Motion Estimation
Motion estimation
Magnetic resonance
Registration
Fluoroscopy
Brachytherapy
Prostate
Seeds
X-Rays

Longitudinal analysis of mouse SDOCT volumes

Antony, B. J., Carass, A., Lang, A., Kim, B. J., Zack, D. J. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
mice
tomography
Animals

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge

Carass, A., Roy, S., Jog, A., Cuzzocreo, J. L., Magrath, E., Gherman, A., Button, J., Nguyen, J., Prados, F., Sudre, C. H., Jorge Cardoso, M., Cawley, N., Ciccarelli, O., Wheeler-Kingshott, C. A. M., Ourselin, S., Catanese, L., Deshpande, H., Maurel, P., Commowick, O., Barillot, C. & 26 othersTomas-Fernandez, X., Warfield, S. K., Vaidya, S., Chunduru, A., Muthuganapathy, R., Krishnamurthi, G., Jesson, A., Arbel, T., Maier, O., Handels, H., Iheme, L. O., Unay, D., Jain, S., Sima, D. M., Smeets, D., Ghafoorian, M., Platel, B., Birenbaum, A., Greenspan, H., Bazin, P. L., Calabresi, P., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L., Mar 1 2017, In : NeuroImage. 148, p. 77-102 26 p.

Research output: Contribution to journalArticle

Multiple Sclerosis
Research Personnel
Research
Datasets

Longitudinal multiple sclerosis lesion segmentation data resource

Carass, A., Roy, S., Jog, A., Cuzzocreo, J. L., Magrath, E., Gherman, A., Button, J., Nguyen, J., Bazin, P. L., Calabresi, P., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L., Jun 1 2017, In : Data in Brief. 12, p. 346-350 5 p.

Research output: Contribution to journalArticle

multiple sclerosis
resources
segmentation
website
expert

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning

Lee, J., Carass, A., Jog, A., Zhao, C. & Prince, J. L., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331I

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Radiotherapy
Magnetic resonance imaging
planning
radiation therapy

Phase Vector Incompressible Registration Algorithm (PVIRA) for Motion Estimation from Tagged Magnetic Resonance Images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., Jul 2 2017, (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticle

Image registration
Motion estimation
Magnetic resonance
Magnetic Resonance Spectroscopy
Tissue

Probabilistic tractography using Lasso bootstrap

Ye, C. & Prince, J. L., Jan 1 2017, In : Medical Image Analysis. 35, p. 544-553 10 p.

Research output: Contribution to journalArticle

Fiber reinforced materials
Diffusion Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques
Uncertainty

Random forest regression for magnetic resonance image synthesis

Jog, A., Carass, A., Roy, S., Pham, D. L. & Prince, J. L., Jan 1 2017, In : Medical Image Analysis. 35, p. 475-488 14 p.

Research output: Contribution to journalArticle

Magnetic resonance
Magnetic Resonance Spectroscopy
Tissue
Imaging techniques
Image analysis

Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)

Pereira, L., Airan, R. D., Fishman, A., Pillai, J., Kansal, K., Onyike, C. U., Prince, J. L., Ying, S. H. & Sair, H., 2017, (Accepted/In press) In : Human Brain Mapping.

Research output: Contribution to journalArticle

Ataxia
Executive Function
Magnetic Resonance Imaging
Psychomotor Performance
Spinocerebellar Ataxias

Structural cerebellar correlates of cognitive and motor dysfunctions in cerebellar degeneration

Kansal, K., Yang, Z., Fishman, A. M., Sair, H., Ying, S. H., Jedynak, B. M., Prince, J. L. & Onyike, C. U., Mar 1 2017, In : Brain : a journal of neurology. 140, 3, p. 707-720 14 p.

Research output: Contribution to journalArticle

Cerebellar Diseases
Short-Term Memory
Cerebellum
Verbal Learning
Long-Term Memory

Test suite for image-based motion estimation of the brain and tongue

Ramsey, J., Prince, J. L. & Gomez, A. D., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

tongue
Motion estimation
Tongue
brain
Brain

Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort

Glaister, J., Carass, A., NessAiver, T., Stough, J. V., Saidha, S., Calabresi, P. & Prince, J. L., Sep 1 2017, In : NeuroImage. 158, p. 430-440 11 p.

Research output: Contribution to journalArticle

Validation Studies
Thalamus
Diffusion Tensor Imaging
Atlases
Multiple Sclerosis
2016

A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation

Ye, C. & Prince, J. L., Dec 1 2016, In : Computerized Medical Imaging and Graphics. 54, p. 35-47 13 p.

Research output: Contribution to journalArticle

Bayes Theorem
Fiber reinforced materials
Diffusion Magnetic Resonance Imaging
Diffusion Tensor Imaging
Diffusion tensor imaging

A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging

Bilgel, M., Prince, J. L., Wong, D. F., Resnick, S. M. & Jedynak, B. M., Jul 1 2016, In : NeuroImage. 134, p. 658-670 13 p.

Research output: Contribution to journalArticle

Amyloid
Neuroimaging
Parietal Lobe
Biomarkers
Brain

Analysis of 3-D tongue motion from tagged and cine magnetic resonance images

Xing, F., Woo, J., Lee, J., Murano, E. Z., Stone, M. & Prince, J. L., Jun 1 2016, In : Journal of Speech, Language, and Hearing Research. 59, 3, p. 468-479 12 p.

Research output: Contribution to journalArticle

Tongue
Magnetic Resonance Spectroscopy
Glossectomy
Walkers
Muscles

A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI

Woo, J., Xing, F., Lee, J., Stone, M. & Prince, J. L., Apr 10 2016, (Accepted/In press) In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. p. 1-12 12 p.

Research output: Contribution to journalArticle

Cine Magnetic Resonance Imaging
Atlases
Statistical Models
Magnetic resonance
Tongue

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction

Abulnaga, S. M., Yang, Z., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Computer-Aided Diagnosis. SPIE, Vol. 9785. 97852P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cerebellar Diseases
Cerebellum
Atrophy
cerebellum
atrophy

Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease

Yang, Z., Ye, C., Bogovic, J. A., Carass, A., Jedynak, B. M., Ying, S. H. & Prince, J. L., Feb 15 2016, In : NeuroImage. 127, p. 435-444 10 p.

Research output: Contribution to journalArticle

Cerebellar Diseases
Spinocerebellar Ataxias
Cerebellum
Atrophy
Atlases

Combined registration and motion correction of longitudinal retinal OCT data

Lang, A., Carass, A., Al-Louzi, O., Bhargava, P., Solomon, S., Calabresi, P. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840X

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
tomography
Thickness measurement
Eye movements

Combining multi-atlas segmentation with brain surface estimation

Huo, Y., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
brain
Brain
Surface reconstruction
Labels

Consistent cortical reconstruction and multi-atlas brain segmentation

Huo, Y., Plassard, A. J., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A., Apr 5 2016, (Accepted/In press) In : NeuroImage.

Research output: Contribution to journalArticle

Atlases
Brain
Benchmarking
Population

CT and MRI fusion for postimplant prostate brachytherapy evaluation

Dehghan, E., Le, Y., Lee, J., Song, D. Y., Fichtinger, G. & Prince, J. L., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June. p. 625-628 4 p. 7493345

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brachytherapy
Magnetic resonance imaging
Seed
Prostate
Fusion reactions

Effects of spatial resolution on image registration

Zhao, C., Carass, A., Jog, A. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840Y

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spatial Analysis
Image registration
spatial resolution
random noise
estimates

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L., 2016, Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none. p. 87-96 10 p. (Mathematics and Visualization; vol. none).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Orientation
Fiber reinforced materials
Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L., Aug 1 2016, In : Medical Image Analysis. 32, p. 243-256 14 p.

Research output: Contribution to journalArticle

Diffusion Magnetic Resonance Imaging
Fiber reinforced materials
Noise
Magnetic resonance
Tongue

Improving cerebellar segmentation with statistical fusion

Plassard, A. J., Yang, Z., Prince, J. L., Claassen, D. O. & Landman, B. A., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97842R

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Iterative methods
Fusion reactions
fusion
Imaging techniques
Post and Core Technique

Individual estimates of age at detectable amyloid onset for risk factor assessment

Bilgel, M., An, Y., Zhou, Y., Wong, D. F., Prince, J. L., Ferrucci, L. & Resnick, S. M., 2016, (Accepted/In press) In : Alzheimer's and Dementia.

Research output: Contribution to journalArticle

Age of Onset
Amyloid
Baltimore
Sex Education
Survival Analysis

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S., Calabresi, P. & Prince, J. L., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June. p. 197-200 4 p. 7493243

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
Magnetic resonance imaging
Retina
Imaging techniques

Investigation of bias in continuous medical image label fusion

Xing, F., Prince, J. L. & Landman, B. A., Jun 1 2016, In : PLoS One. 11, 6, e0155862.

Research output: Contribution to journalArticle

Labels
Fusion reactions
Medical imaging
Diagnostic Imaging
Labeling

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization

Yang, Z., Abulnaga, S. M., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

ataxia
atrophy
Cerebellar Ataxia
landmarks
Ataxia

MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery

Reaungamornrat, S., De Silva, T., Uneri, A., Vogt, S., Kleinszig, G., Khanna, A. J., Wolinsky, J. P., Prince, J. L. & Siewerdsen, J., Nov 1 2016, In : IEEE Transactions on Medical Imaging. 35, 11, p. 2413-2424 12 p., 7484313.

Research output: Contribution to journalArticle

Computer-Assisted Surgery
Surgery
Spine
Newton-Raphson method
Anatomy

MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery

Reaungamornrat, S., De Silva, T., Uneri, A., Wolinsky, J. P., Khanna, A. J., Kleinszig, G., Vogt, S., Prince, J. L. & Siewerdsen, J., 2016, Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 9786. 97860H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Surgery
spine
Image registration
surgery
Surgery

Pain, cognition and quality of life associate with structural measures of brain volume loss in multiple sclerosis

Fritz, N. E., Roy, S., Keller, J., Prince, J. L., Calabresi, P. & Zackowski, K. M., Oct 14 2016, In : NeuroRehabilitation. 39, 4, p. 535-544 10 p.

Research output: Contribution to journalArticle

Cognition
Multiple Sclerosis
Quality of Life
Pain
Brain

Performance evaluation of MIND demons deformable registration of MR and CT images in spinal interventions

Reaungamornrat, S., De Silva, T., Uneri, A., Goerres, J., Jacobson, M., Ketcha, M., Vogt, S., Kleinszig, G., Khanna, A. J., Wolinsky, J. P., Prince, J. L. & Siewerdsen, J., Nov 3 2016, In : Physics in Medicine and Biology. 61, 23, p. 8276-8297 22 p.

Research output: Contribution to journalArticle

Computer-Assisted Surgery
Spine
Anatomy
Nerve Tissue
Blood Vessels

Preface

Tsaftaris, S. A., Gooya, A., Frangi, A. F. & Prince, J. L., 2016, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9968 LNCS, p. V-VI

Research output: Contribution to journalEditorial

Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles

Li, K., Ye, C., Yang, Z., Carass, A., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97841H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

assurance
Quality assurance
Diffusion tensor imaging
Logistics
Classifiers

Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling

Ellingsen, L. M., Roy, S., Carass, A., Blitz, A. M., Pham, D. L. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Normal Pressure Hydrocephalus
Atlases
Labeling
marking
Tissue

Segmentation of thalamus from MR images via task-driven dictionary learning

Liu, L., Glaister, J., Sun, X., Carass, A., Tran, T. D. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97843H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

thalamus
dictionaries
Glossaries
Thalamus
learning

Self super-resolution for magnetic resonance images

Jog, A., Carass, A. & Prince, J. L., 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9902 LNCS. p. 553-560 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9902 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic Resonance Image
Super-resolution
Magnetic resonance
Optical resolving power
Image resolution

Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes

Antony, B. J., Lang, A., Swingle, E. K., Al-Louzi, O., Carass, A., Solomon, S., Calabresi, P., Saidha, S. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97841C

Research output: Chapter in Book/Report/Conference proceedingConference contribution

edema
Macular Edema
Optical tomography
Optical Coherence Tomography
Imaging techniques