Find Research Outputs — Johns Hopkins University

3-Bromopyruvate: A novel antifungal agent against the human pathogen Cryptococcus neoformans

Dylag, M., Lis, P., Niedźwiecka, K., Ko, Y. H., Pedersen, P. L., Goffeau, A. & Ułaszewski, S., May 3 2013, In: Biochemical and Biophysical Research Communications. 434, 2, p. 322-327 6 p.

Research output: Contribution to journal › Article › peer-review

3-Bromopyruvate (3BP) a fast acting, promising, powerful, specific, and effective "small molecule" anti-cancer agent taken from labside to bedside: Introduction to a special issue

Pedersen, P. L., Feb 1 2012, In: Journal of Bioenergetics and Biomembranes. 44, 1, p. 1-6 6 p.

Research output: Contribution to journal › Review article › peer-review

3-Bromopyruvate as a potent anticancer therapy in honor and memory of the late Professor André Goffeau

Ko, Y. H., Niedźwiecka, K., Casal, M., Pedersen, P. L. & Ułaszewski, S., Apr 2019, In: Yeast. 36, 4, p. 211-221 11 p.

Research output: Contribution to journal › Article › peer-review

3D-2D image registration for target localization in spine surgery: Investigation of similarity metrics providing robustness to content mismatch

De Silva, T., Uneri, A., Ketcha, M. D., Reaungamornrat, S., Kleinszig, G., Vogt, S., Aygun, N., Lo, S. F., Wolinsky, J. P. & Siewerdsen, J. H., Mar 18 2016, In: Physics in medicine and biology. 61, 8, p. 3009-3025 17 p.

Research output: Contribution to journal › Article › peer-review

3D-2D image registration in virtual long-film imaging: Application to spinal deformity correction

Uneri, A., Zhang, X., Stayman, J. W., Helm, P. A., Osgood, G. M., Theodore, N. & Siewerdsen, J. H., 2019, Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, 109511H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10951).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3D-2D registration for surgical guidance: Effect of projection view angles on registration accuracy

Uneri, A., Otake, Y., Wang, A. S., Kleinszig, G., Vogt, S., Khanna, A. J. & Siewerdsen, J. H., Jan 20 2014, In: Physics in medicine and biology. 59, 2, p. 271-287 17 p.

Research output: Contribution to journal › Article › peer-review

3D-2D registration in mobile radiographs: Algorithm development and preliminary clinical evaluation

Otake, Y., Wang, A. S., Uneri, A., Kleinszig, G., Vogt, S., Aygun, N., Lo, S. F. L., Wolinsky, J. P., Gokaslan, Z. L. & Siewerdsen, J. H., Feb 21 2015, In: Physics in medicine and biology. 60, 5, p. 2075-2090 16 p.

Research output: Contribution to journal › Article › peer-review

3D Analysis of Multi-cellular Responses to Chemoattractant Gradients

Kang, T. Y., Ellison, D., Lee, S. H., Ewald, A. J. & Levchenko, A., May 24 2019, In: Journal of visualized experiments : JoVE. 147

Research output: Contribution to journal › Article › peer-review

3D - A new dimension of in vitro research

Hartung, T., 2014, In: Advanced Drug Delivery Reviews. 69-70, p. 6 1 p.

Research output: Contribution to journal › Editorial › peer-review

3D arrays for high throughput assay of cell migration and electrotaxis

Zhao, S., Gao, R., Devreotes, P. N., Mogilner, A. & Zhao, M., 2013, In: Cell biology international. 37, 9, p. 995-1002 8 p.

Research output: Contribution to journal › Article › peer-review

3D Assisted Prenatal Sonographic Diagnosis of Dicephalic Conjoined Twins and Subsequent Planned Vaginal Delivery

Petersen, S., Hansel, D., Milio, L., Hueppchen, N., McShane, C. & Henderson, J., Jan 1 2014, In: Case Reports in Women's Health. 1, C, p. 1-3 3 p.

Research output: Contribution to journal › Article › peer-review

3D cell biology - The expanding frontier

Ewald, A. J., 2017, In: Journal of cell science. 130, 1, p. 1 1 p.

Research output: Contribution to journal › Editorial › peer-review

3D CT cinematic rendering of the spleen: Potential role in problem solving

Rowe, S. P., Chu, L. C. & Fishman, E. K., Sep 2019, In: Diagnostic and Interventional Imaging. 100, 9, p. 477-483 7 p.

Research output: Contribution to journal › Short survey › peer-review

3D culture assays of murine mammary branching morphogenesis and epithelial invasion

Nguyen-Ngoc, K. V., Shamir, E. R., Huebner, R. J., Beck, J. N., Cheung, K. J. & Ewald, A. J., Sep 22 2014, Tissue Morphogenesis: Methods and Protocols. Springer New York, p. 135-162 28 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3D Deep Neural Network Segmentation of Intracerebral Hemorrhage: Development and Validation for Clinical Trials

Sharrock, M. F., Mould, W. A., Ali, H., Hildreth, M., Awad, I. A., Hanley, D. F. & Muschelli, J., 2020, (Accepted/In press) In: Neuroinformatics.

Research output: Contribution to journal › Article › peer-review

3D differentiation of LUHMES cell line to study recovery and delayed neurotoxic effects

Harris, G., Hogberg, H., Hartung, T. & Smirnova, L., 2017, In: Current Protocols in Toxicology. 2017

Research output: Contribution to journal › Article › peer-review

3D discrete angiogenesis dynamic model and stochastic simulation for the assessment of blood perfusion coefficient and impact on heat transfer between nanoparticles and malignant tumors

Yifat, J. & Gannot, I., Mar 1 2015, In: Microvascular Research. 98, p. 197-217 21 p.

Research output: Contribution to journal › Article › peer-review

3D dynamic pituitary MR imaging with CAIPIRINHA: initial experience and comparison with 2D dynamic MR imaging

Fushimi, Y., Okada, T., Kanagaki, M., Yamamoto, A., Kanda, Y., Sakamoto, R., Hojo, M., Takahashi, J. C., Miyamoto, S. & Togashi, K., Oct 1 2014, In: European Journal of Radiology. 83, 10, p. 1900-1906 7 p.

Research output: Contribution to journal › Article › peer-review

3D dynamic visualization of swallowing from multi-slice computed tomography

Ho, A. K., Nicosia, M. A., Dietsch, A., Pearson, W., Rieger, J., Solomon, N., Stone, M., Inamoto, Y., Saitoh, E., Green, S. & Fels, S., 2014, ACM SIGGRAPH 2014 Posters, SIGGRAPH 2014. Association for Computing Machinery, 103

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3-D experimental UWB microwave imaging in dispersive media

Shao, W. & Zhou, B., Jan 22 2020, In: Journal of Electromagnetic Waves and Applications. 34, 2, p. 213-223 11 p.

Research output: Contribution to journal › Article › peer-review

3D freehand ultrasound reconstruction using a piecewise smooth Markov random field

Moon, H., Ju, G., Park, S. & Shin, H., Oct 1 2016, In: Computer Vision and Image Understanding. 151, p. 101-113 13 p.

Research output: Contribution to journal › Article › peer-review

3D-guided CT reconstruction using time-of-flight camera

Ismail, M., Taguchi, K., Xu, J., Tsui, B. M. W. & Boctor, E. M., May 16 2011, Medical Imaging 2011: Visualization, Image-Guided Procedures, and Modeling. 796429. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7964).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3-D illustration of network orientations of interstitial cells of Cajal subgroups in human colon as revealed by deep-tissue imaging with optical clearing.

Liu, Y. A., Chung, Y. C., Pan, S. T., Hou, Y. C., Peng, S. J., Pasricha, P. J. & Tang, S. C., May 15 2012, In: American journal of physiology. Gastrointestinal and liver physiology. 302, 10, p. G1099-1110

Research output: Contribution to journal › Article › peer-review

3-D imaging, illustration, and quantitation of enteric glial network in transparent human colon mucosa

Liu, Y. A., Chung, Y. C., Pan, S. T., Shen, M. Y., Hou, Y. C., Peng, S. J., Pasricha, P. J. & Tang, S. C., May 1 2013, In: Neurogastroenterology and Motility. 25, 5, p. e324-e338

Research output: Contribution to journal › Article › peer-review

3-D imaging and illustration of mouse intestinal neurovascular complex

Fu, Y. Y., Peng, S. J., Lin, H. Y., Pasricha, P. J. & Tang, S. C., Jan 1 2013, In: American Journal of Physiology - Gastrointestinal and Liver Physiology. 304, 1, p. G1-G11

Research output: Contribution to journal › Article › peer-review

3-D imaging and illustration of the perfusive mouse islet sympathetic innervation and its remodelling in injury

Chiu, Y. C., Hua, T. E., Fu, Y. Y., Pasricha, P. J. & Tang, S. C., Dec 2012, In: Diabetologia. 55, 12, p. 3252-3261 10 p.

Research output: Contribution to journal › Article › peer-review

3-Dimensional Magnetic Resonance Imaging Guided Pelvic Floor Dissection for Bladder Exstrophy: A Single Arm Trial

Di Carlo, H. N., Maruf, M., Massanyi, E. Z., Shah, B., Tekes, A. & Gearhart, J. P., Aug 1 2019, In: Journal of Urology. 202, 2, p. 406-412 7 p.

Research output: Contribution to journal › Article › peer-review

3-D isotropic MR imaging for planning bone reconstruction in patients with femoroacetabular impingement

Nordeck, S., Flanagan, J., Tenorio, L., Robertson, W. & Chhabra, A., Jan 1 2015, In: Radiologic technology. 87, 1, p. 21-28 8 p.

Research output: Contribution to journal › Article › peer-review

3D left ventricular extracellular volume fraction by low-radiation dose cardiac CT: Assessment of interstitial myocardial fibrosis

Nacif, M. S., Liu, Y., Yao, J., Liu, S., Sibley, C. T., Summers, R. M. & Bluemke, D. A., Jan 2013, In: Journal of cardiovascular computed tomography. 7, 1, p. 51-57 7 p.

Research output: Contribution to journal › Article › peer-review

3-D Measurements of Acceleration-Induced Brain Deformation via Harmonic Phase Analysis and Finite-Element Models

Gomez, A. D., Knutsen, A. K., Xing, F., Lu, Y. C., Chan, D., Pham, D. L., Bayly, P. & Prince, J. L., May 2019, In: IEEE Transactions on Biomedical Engineering. 66, 5, p. 1456-1467 12 p., 8485774.

Research output: Contribution to journal › Article › peer-review

3D Mesh Releasing Method: A Retrospective Analysis of Fractional CO₂ Treatment on Contracture Scars

Xi, W., Xie, Y., Zhang, Z., Li, K., Wang, J., Li, J., Feng, S., Hultman, C. S., Liu, Y. & Zhang, Y., 2020, (Accepted/In press) In: Lasers in Surgery and Medicine.

Research output: Contribution to journal › Article › peer-review

3D model of frequency representation in the cochlear nucleus of the CBA/J mouse

Muniak, M. A., Rivas, A., Montey, K. L., May, B. J., Francis, H. W. & Ryugo, D. K., May 1 2013, In: Journal of Comparative Neurology. 521, 7, p. 1510-1532 23 p.

Research output: Contribution to journal › Article › peer-review

3D MRI image super-resolution for brain combining rigid and large diffeomorphic registration

Liang, Z., He, X., Teng, Q., Wu, D. & Qing, L., Dec 1 2017, In: IET Image Processing. 11, 12, p. 1291-1301 11 p.

Research output: Contribution to journal › Article › peer-review

3D MR neurography of the lumbosacral plexus: Obtaining optimal images for selective longitudinal nerve depiction

Sims, G. C., Boothe, E., Joodi, R. & Chhabra, A., Nov 2016, In: American Journal of Neuroradiology. 37, 11, p. 2158-2162 5 p.

Research output: Contribution to journal › Article › peer-review

3-DOF force-sensing micro-forceps for robot-Assisted membrane peeling: Intrinsic actuation force modeling

Gao, A., Gonenc, B., Guo, J., Liu, H., Gehlbach, P. & Iordachita, I., Jul 26 2016, 2016 6th IEEE International Conference on Biomedical Robotics and Biomechatronics, BioRob 2016. IEEE Computer Society, Vol. 2016-July. p. 489-494 6 p. 7523674

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3-DOF Force-Sensing Motorized Micro-Forceps for Robot-Assisted Vitreoretinal Surgery

Gonenc, B., Chamani, A., Handa, J., Gehlbach, P., Taylor, R. H. & Iordachita, I., Jun 1 2017, In: IEEE Sensors Journal. 17, 11, p. 3526-3541 16 p., 7903591.

Research output: Contribution to journal › Article › peer-review

3D optical coherence tomography image registration for guiding cochlear implant insertion

Cheon, G. W., Jeong, H. W., Chalasani, P., Chien, W. W., Iordachita, I., Taylor, R., Niparko, J. & Kang, J. U., 2014, Photonic Therapeutics and Diagnostics X. SPIE, 89261Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8926).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3D organization of synthetic and scrambled chromosomes

Mercy, G., Mozziconacci, J., Scolari, V. F., Yang, K., Zhao, G., Thierry, A., Luo, Y., Mitchell, L. A., Shen, M., Shen, Y., Walker, R., Zhang, W., Wu, Y., Xie, Z. X., Luo, Z., Cai, Y., Dai, J., Yang, H., Yuan, Y. J., Boeke, J. D. & 3 others, Bader, J. S., Muller, H. & Koszul, R., Mar 10 2017, In: Science. 355, 6329, eaaf4597.

Research output: Contribution to journal › Article › peer-review

3D Printed Anatomical Nerve Regeneration Pathways

Johnson, B. N., Lancaster, K. Z., Zhen, G., He, J., Gupta, M. K., Kong, Y. L., Engel, E. A., Krick, K. D., Ju, A., Meng, F., Enquist, L. W., Jia, X. & McAlpine, M. C., Oct 1 2015, In: Advanced Functional Materials. 25, 39, p. 6205-6217 13 p.

Research output: Contribution to journal › Article › peer-review

3D-Printed Biodegradable Polymeric Vascular Grafts

Melchiorri, A. J., Hibino, N., Best, C. A., Yi, T., Lee, Y. U., Kraynak, C. A., Kimerer, L. K., Krieger, A., Kim, P., Breuer, C. K. & Fisher, J. P., Feb 4 2016, In: Advanced healthcare materials. 5, 3, p. 319-325 7 p.

Research output: Contribution to journal › Article › peer-review

3D printed biomimetic vascular phantoms for assessment of hyperspectral imaging systems

Wang, J., Ghassemi, P., Melchiorri, A., Ramella-Roman, J., Mathews, S. A., Coburn, J., Sorg, B., Chen, Y. & Pfefer, J., 2015, Design and Performance Validation of Phantoms Used in Conjunction with Optical Measurement of Tissue VII. SPIE, Vol. 9325. 932508

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3D printed nerve guidance channels: Computer-aided control of geometry, physical cues, biological supplements and gradients

Johnson, B. N. & Jia, X., Oct 2016, In: Neural Regeneration Research. 11, 10, p. 1568-1569 2 p.

Research output: Contribution to journal › Article › peer-review

3D-printed polymethylmethacrylate implant for cranioplasty

Santiago, G., Wolff, A., Belzberg, M. & Gordon, C. R., May 1 2019, In: Journal of neurosurgery. 130, 5, p. 1773-1774 2 p.

Research output: Contribution to journal › Letter › peer-review

3D-printed surface mould applicator for high-dose-rate brachytherapy

Schumacher, M., Lasso, A., Cumming, I., Rankin, A., Falkson, C. B., Schreiner, L. J., Joshi, C. & Fichtinger, G., 2015, Medical Imaging 2015: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 9415. 94152E

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3D Printer Generated Tissue iMolds for Cleared Tissue Using Single- and Multi-Photon Microscopy for Deep Tissue Evaluation

Miller, S. J. & Rothstein, J. D., Jul 5 2017, In: Biological Procedures Online. 19, 1, 7.

Research output: Contribution to journal › Article › peer-review

3D printing and characterization of a soft and biostable elastomer with high flexibility and strength for biomedical applications

Bachtiar, E. O., Erol, O., Millrod, M., Tao, R., Gracias, D. H., Romer, L. H. & Kang, S. H., Apr 2020, In: Journal of the Mechanical Behavior of Biomedical Materials. 104, 103649.

Research output: Contribution to journal › Article › peer-review

3D quantitative assessment of response to fractionated stereotactic radiotherapy and single-session stereotactic radiosurgery of vestibular schwannoma

Schneider, T., Chapiro, J., Lin, M., Geschwind, J. F., Kleinberg, L., Rigamonti, D., Jusué-Torres, I., Marciscano, A. E. & Yousem, D. M., Mar 1 2016, In: European radiology. 26, 3, p. 849-857 9 p.

Research output: Contribution to journal › Article › peer-review

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