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2018

Analysis of Cellular Tyrosine Phosphorylation via Chemical Rescue of Conditionally Active Abl Kinase

Wang, Z., Kim, M. S., Martinez-Ferrando, I., Koleske, A. J., Pandey, A. & Cole, P. A. Feb 27 2018 In : Biochemistry. 57, 8, p. 1390-1398 9 p.

Research output: Contribution to journalArticle

Phosphorylation
Protein Kinases
Tyrosine
Intercellular Signaling Peptides and Proteins
Phosphotransferases

A network map of IL-33 signaling pathway

Pinto, S. M., Subbannayya, Y., Rex, D. A. B., Raju, R., Chatterjee, O., Advani, J., Radhakrishnan, A., Keshava Prasad, T. S., Wani, M. R. & Pandey, A. Apr 28 2018 (Accepted/In press) In : Journal of Cell Communication and Signaling. p. 1-10 10 p.

Research output: Contribution to journalArticle

Cytokines
TNF Receptor-Associated Factor 6
Interleukin-33
Protein Transport
Atopic Dermatitis

BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation

Kim, D. I., Cutler, J. A., Na, C. H., Reckel, S., Renuse, S., Madugundu, A. K., Tahir, R., Goldschmidt, H. L., Reddy, K. L., Huganir, R. L., Wu, X., Zachara, N. E., Hantschel, O. & Pandey, A. Feb 2 2018 In : Journal of Proteome Research. 17, 2, p. 759-769 11 p.

Research output: Contribution to journalArticle

Biotinylation
Biotin
Technology
Labeling
Proteins

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini

Na, C. H., Barbhuiya, M. A., Kim, M. S., Verbruggen, S., Eacker, S. M., Pletnikova, O., Troncoso, J. C., Halushka, M. K., Menschaert, G., Overall, C. M. & Pandey, A. Jan 1 2018 In : Genome Research. 28, 1, p. 25-36 12 p.

Research output: Contribution to journalArticle

Ribosomes
Methionine
Translational Peptide Chain Initiation
Proteins
Initiator Codon

GBA1 deficiency negatively affects physiological α-synuclein tetramers and related multimers

Kim, S., Yun, S. P., Lee, S., Umanah, G. E., Bandaru, V. V. R., Yin, X., Rhee, P., Karuppagounder, S. S., Kwon, S. H., Lee, H., Mao, X., Kim, D., Pandey, A., Lee, G., Dawson, V. L., Dawson, T. M. & Ko, H. S. Jan 23 2018 In : Proceedings of the National Academy of Sciences of the United States of America. 115, 4, p. 798-803 6 p.

Research output: Contribution to journalArticle

Gaucher Disease
alpha-Synuclein
Glucosylceramidase
Glycosphingolipids
Dopaminergic Neurons

Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover

Heo, S., Diering, G. H., Na, C. H., Nirujogi, R. S., Bachman, J. L., Pandey, A. & Huganir, R. L. Apr 17 2018 In : Proceedings of the National Academy of Sciences of the United States of America. 115, 16, p. E3827-E3836

Research output: Contribution to journalArticle

Synaptosomes
Proteomics
Synapses
Proteins
Maintenance

Identification of spleen tyrosine kinase as a potential therapeutic target for esophageal squamous cell carcinoma using reverse phase protein arrays

Barbhuiya, M. A., Kashyap, M. K., Puttamallesh, V. N., Kumar, R. V., Wu, X., Pandey, A. & Gowda, H. Apr 1 2018 In : Oncotarget. 9, 26, p. 18422-18434 13 p.

Research output: Contribution to journalArticle

Protein Array Analysis
Therapeutics
Cell Line
Phase II Clinical Trials
Syk Kinase

Integrated stress response and decreased ECM in cultured stromal cells from keratoconus corneas

Foster, J. W., Shinde, V., Soiberman, U. S., Sathe, G., Liu, S., Wan, J., Qian, J., Dauoud, Y., Pandey, A., Jun, A. S. & Chakravarti, S. Jun 1 2018 In : Investigative Ophthalmology and Visual Science. 59, 7, p. 2977-2986 10 p.

Research output: Contribution to journalArticle

Keratoconus
Stromal Cells
Cornea
Cultured Cells
Proteins

Phosphoproteomics of retinoblastoma: A pilot study identifies aberrant kinases

Selvan, L. D. N., Danda, R., Madugundu, A. K., Puttamallesh, V. N., Sathe, G. J., Krishnan, U. M., Khetan, V., Rishi, P., Prasad, T. S. K., Pandey, A., Krishnakumar, S., Gowda, H. & Elchuri, S. V. Jan 1 2018 In : Molecules. 23, 6, 1454

Research output: Contribution to journalArticle

Retinoblastoma
Phosphotransferases
Fault tolerance
proteins
phosphorylation

Proteogenomic Analysis to Identify Missing Proteins from Haploid Cell Lines

Lee, S. E., Song, J. K., Bösl, K., Müller, A. C., Vitko, D., Bennett, K. L., Superti-Furga, G., Pandey, A., Kandasamy, R. K. & Kim, M. S. Apr 1 2018 In : Proteomics. 18, 8, 1700386

Research output: Contribution to journalArticle

Haploidy
Cell Line
Proteins
Proteome
Proteomics

Proteome-wide changes in primary skin keratinocytes exposed to diesel particulate extract—A role for antioxidants in skin health

Rajagopalan, P., Jain, A. P., Nanjappa, V., Patel, K., Mangalaparthi, K. K., Babu, N., Cavusoglu, N., Roy, N., Soeur, J., Breton, L., Pandey, A., Gowda, H., Chatterjee, A. & Misra, N. Jan 1 2018 (Accepted/In press) In : Journal of Dermatological Science.

Research output: Contribution to journalArticle

Marine biology
Proteome
Keratinocytes
Antioxidants
Skin

Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts

Wu, X., Zahari, M. S., Renuse, S., Sahasrabuddhe, N. A., Chaerkady, R., Kim, M. S., Fackler, M. J., Stampfer, M., Gabrielson, E., Sukumar, S. & Pandey, A. Jun 15 2018 In : Clinical Proteomics. 15, 1, 21

Research output: Contribution to journalArticle

Delta wing aircraft
Unsaturated polymers
Receptor Protein-Tyrosine Kinases
Coagulation
Fibroblasts

USP9X controls translation efficiency via deubiquitination of eukaryotic translation initiation factor 4A1

Li, Z., Cheng, Z., Raghothama, C., Cui, Z., Liu, K., Li, X., Jiang, C., Jiang, W., Tan, M., Ni, X., Pandey, A., Liu, J. O. & Dang, Y. Jan 25 2018 In : Nucleic acids research. 46, 2, p. 823-839 17 p.

Research output: Contribution to journalArticle

Eukaryotic Initiation Factor-4A
Eukaryotic Initiation Factors
Ubiquitin
Peptide Hydrolases
Messenger RNA
2017

Differential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis

Cutler, J. A., Tahir, R., Sreenivasamurthy, S. K., Mitchell, C., Renuse, S., Nirujogi, R. S., Patil, A. H., Heydarian, M., Wong, X., Wu, X., Huang, T. C., Kim, M. S., Reddy, K. L. & Pandey, A. Mar 28 2017 (Accepted/In press) In : Leukemia.

Research output: Contribution to journalArticle

Proteins
Biotinylation
Cytoskeleton
Publications
Leukemia
VDJ Recombinases
RAG-1 Genes
Genetic Recombination
Catalytic Domain
DNA

Homer1a drives homeostatic scaling-down of excitatory synapses during sleep

Diering, G. H., Nirujogi, R. S., Roth, R. H., Worley, P. F., Pandey, A. & Huganir, R. L. Feb 3 2017 In : Science. 355, 6324, p. 511-515 5 p.

Research output: Contribution to journalArticle

Synapses
Sleep
Metabotropic Glutamate 5 Receptor
Neuronal Plasticity
Immediate-Early Genes

Human adenine nucleotide translocases physically and functionally interact with respirasomes

Lu, Y. W., Acoba, M. G., Selvaraju, K., Huang, T. C., Nirujogi, R. S., Sathe, G., Pandey, A. & Claypool, S. M. Jun 1 2017 In : Molecular Biology of the Cell. 28, 11, p. 1489-1506 18 p.

Research output: Contribution to journalArticle

ATP Translocases Mitochondrial ADP
Oxidative Phosphorylation
Protein Isoforms
Adenosine Diphosphate
Adenosine Triphosphate

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes

Prasad, T. S. K. , Mohanty, A. K. , Kumar, M. , Sreenivasamurthy, S. K. , Dey, G. , Nirujogi, R. S. , Pinto, S. M. , Madugundu, A. K. , Patil, A. H. , Advani, J. , Manda, S. S. , Gupta, M. K. , Dwivedi, S. B. , Kelkar, D. S. , Hall, B. , Jiang, X. , Peery, A. , Rajagopalan, P. , Yelamanchi, S. D. , Solanki, H. S. & 22 others Raja, R., Sathe, G. J., Chavan, S., Verma, R., Patel, K. M., Jain, A. P., Syed, N., Datta, K. K., Khan, A. A., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, C. J., Na, C. H., Kumar, N., Sinnis, P., Sharakhov, I. V., Wang, C., Gowda, H., Tu, Z., Kumar, A. & Pandey, A. Jan 1 2017 In : Genome Research. 27, 1, p. 133-144 12 p.

Research output: Contribution to journalArticle

Proteomics
Genome
Proteome
Genes
Exons

Mass Spectrometry Reveals Respiratory Viral Infection Biomarkers

Na, C. H. & Pandey, A. Apr 1 2017 In : EBioMedicine. 18, p. 21-22 2 p.

Research output: Contribution to journalComment/debate

Virus Diseases
Respiratory Tract Infections
Mass Spectrometry
Biomarkers

Mosquito-Borne Diseases and Omics: Tissue-Restricted Expression and Alternative Splicing Revealed by Transcriptome Profiling of Anopheles stephensi

Sreenivasamurthy, S. K., Madugundu, A. K., Patil, A. H., Dey, G., Mohanty, A. K., Kumar, M., Patel, K., Wang, C., Kumar, A., Pandey, A. & Prasad, T. S. K. Aug 1 2017 In : OMICS A Journal of Integrative Biology. 21, 8, p. 488-497 10 p.

Research output: Contribution to journalArticle

Anopheles
Alternative Splicing
Gene Expression Profiling
Culicidae
Malaria

Moving to Translational Proteomics

Pandey, A. Mar 1 2017 In : Proteomics. 17, 6, 1770042

Research output: Contribution to journalEditorial

Proteomics

Next-Generation Sequencing Reveals Novel Mutations in X-linked Intellectual Disability

Muthusamy, B., Selvan, L. D. N., Nguyen, T. T., Manoj, J., Stawiski, E. W., Jaiswal, B. S., Wang, W., Raja, R., Ramprasad, V. L., Gupta, R., Murugan, S., Kadandale, J. S., Keshava Prasad, T. S., Reddy, K., Peterson, A., Pandey, A., Seshagiri, S., Girimaji, S. C. & Gowda, H. May 1 2017 In : OMICS A Journal of Integrative Biology. 21, 5, p. 295-303 9 p.

Research output: Contribution to journalArticle

Intellectual Disability
Genes
Mutation
Health
Inborn Genetic Diseases

Proteomic composition and immunomodulatory properties of urinary bladder matrix scaffolds in homeostasis and injury

Sadtler, K., Sommerfeld, S. D., Wolf, M. T., Wang, X., Majumdar, S., Chung, L., Kelkar, D. S., Pandey, A. & Elisseeff, J. H. Feb 28 2017 (Accepted/In press) In : Seminars in Immunology.

Research output: Contribution to journalArticle

Proteomics
Urinary Bladder
Homeostasis
Wounds and Injuries
Biocompatible Materials

Quantitative Proteomic and Phosphoproteomic Analysis of H37Ra and H37Rv Strains of Mycobacterium tuberculosis

Verma, R., Pinto, S. M., Patil, A. H., Advani, J., Subba, P., Kumar, M., Sharma, J., Dey, G., Ravikumar, R., Buggi, S., Satishchandra, P., Sharma, K., Suar, M., Tripathy, S. P., Chauhan, D. S., Gowda, H., Pandey, A., Gandotra, S. & Prasad, T. S. K. Apr 7 2017 In : Journal of Proteome Research. 16, 4, p. 1632-1645 14 p.

Research output: Contribution to journalArticle

Mycobacterium tuberculosis
Proteomics
Phosphorylation
Virulence
Tuberculosis

Quantitative tyrosine phosphoproteomics of Epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response

Zhang, X., Maity, T., Kashyap, M. K., Bansal, M., Venugopalan, A., Singh, S., Awasthi, S., Marimuthu, A., Jacob, H. K. C., Belkina, N., Pitts, S., Cultraro, C. M., Gao, S., Kirkali, G., Biswas, R., Chaerkady, R., Califano, A., Pandey, A. & Guha, U. May 1 2017 In : Molecular and Cellular Proteomics. 16, 5, p. 891-910 20 p.

Research output: Contribution to journalArticle

Biomarkers
Epidermal Growth Factor Receptor
Protein-Tyrosine Kinases
Tyrosine
Phosphorylation

Small molecule inhibitor screening identifified HSP90 inhibitor 17-AAG as potential therapeutic agent for gallbladder cancer

Weber, H., Valbuena, J. R., Barbhuiya, M. A., Stein, S., Kunkel, H., García, P., Bizama, C., Riquelme, I., Espinoza, J. A., Kurtz, S. E., Tyner, J. W., Calderon, J. F., Corvalán, A. H., Grez, M., Pandey, A., Leal-Rojas, P. & Roa, J. C. 2017 In : Oncotarget. 8, 16, p. 26169-26184 16 p.

Research output: Contribution to journalArticle

tanespimycin
Gallbladder Neoplasms
Neoplasms
Therapeutics
G2 Phase Cell Cycle Checkpoints

The non-receptor tyrosine kinase TNK2/ACK1 is a novel therapeutic target in triple negative breast cancer

Wu, X., Zahari, M. S., Renuse, S., Kelkar, D. S., Bharbuiya, M. A., Rojas, P. L., Stearns, V., Gabrielson, E., Malla, P., Sukumar, S., Mahajan, N. P. & Pandey, A. 2017 In : Oncotarget. 8, 2, p. 2971-2983 13 p.

Research output: Contribution to journalArticle

Triple Negative Breast Neoplasms
Protein-Tyrosine Kinases
Breast Neoplasms
Therapeutics
Cell Line

Toward the human cellular microRNAome

McCall, M. N., Kim, M. S., Adil, M., Patil, A. H., Lu, Y., Mitchell, C. J., Leal-Rojas, P., Xu, J., Kumar, M., Dawson, V. L., Dawson, T. M., Baras, A. S., Rosenberg, A. Z., Arking, D. E., Burns, K. H., Pandey, A. & Halushka, M. K. Oct 1 2017 In : Genome Research. 27, 10, p. 1769-1781 13 p.

Research output: Contribution to journalArticle

MicroRNAs
RNA
Cell Line
Regulator Genes
Adipose Tissue

Understanding Epstein-barr virus life cycle with proteomics: A temporal analysis of ubiquitination during virus reactivation

Lv, D. W., Zhong, J., Zhang, K., Pandey, A. & Li, R. Jan 1 2017 In : OMICS A Journal of Integrative Biology. 21, 1, p. 27-37 11 p.

Research output: Contribution to journalArticle

Ubiquitination
Life Cycle Stages
Human Herpesvirus 4
Viruses
Proteomics

Whole Genome Sequencing of Mycobacterium tuberculosis Isolates from Extrapulmonary Sites

Sharma, K., Verma, R., Advani, J., Chatterjee, O., Solanki, H. S., Sharma, A., Varma, S., Modi, M., Ray, P., Mukherjee, K. K., Sharma, M., Dhillion, M. S., Suar, M., Chatterjee, A., Pandey, A., Prasad, T. S. K. & Gowda, H. Jul 1 2017 In : OMICS A Journal of Integrative Biology. 21, 7, p. 413-425 13 p.

Research output: Contribution to journalArticle

Mycobacterium tuberculosis
Genes
Genome
Tuberculosis
Drug Resistance
2016

A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma

Radhakrishnan, A. , Nanjappa, V. , Raja, R. , Sathe, G. , Puttamallesh, V. N. , Jain, A. P. , Pinto, S. M. , Balaji, S. A. , Chavan, S. , Sahasrabuddhe, N. A. , Mathur, P. P. , Kumar, M. M. , Prasad, T. S. K. , Santosh, V. , Sukumar, G. , Califano, J. A. , Rangarajan, A. , Sidransky, D. , Pandey, A. , Gowda, H. & 1 others Chatterjee, A. Oct 31 2016 In : Scientific Reports. 6, 36132

Research output: Contribution to journalArticle

Phosphotransferases
Cell Line
Therapeutics
Neoplasms
Phosphorylation

A sequence upstream of canonical PDZ-binding motif within CFTR COOH-terminus enhances NHERF1 interaction

Sharma, N., LaRusch, J., Sosnay, P. R., Gottschalk, L. B., Lopez, A. P., Pellicore, M. J., Evans, T., Davis, E., Atalar, M., Na, C. H., Rosson, G. D., Belchis, D., Milewski, M., Pandey, A. & Cutting, G. R. 2016 In : American Journal of Physiology - Lung Cellular and Molecular Physiology. 311, 6, p. L1170-L1182

Research output: Contribution to journalArticle

Cystic Fibrosis Transmembrane Conductance Regulator
Alanine
RNA Sequence Analysis
Sweat Glands
Madin Darby Canine Kidney Cells

Chronic exposure to cigarette smoke leads to activation of p21 (RAC1)-activated kinase 6 (PAK6) in non-small cell lung cancer cells

Raja, R., Sahasrabuddhe, N. A., Radhakrishnan, A., Syed, N., Solanki, H. S., Puttamallesh, V. N., Balaji, S. A., Nanjappa, V., Datta, K. K., Babu, N., Renuse, S., Patil, A. H., Izumchenko, E., Prasad, T. S. K., Chang, X., Rangarajan, A., Sidransky, D., Pandey, A., Gowda, H. & Chatterjee, A. 2016 In : Oncotarget. 7, 38, p. 61229-61245 17 p.

Research output: Contribution to journalArticle

p21-Activated Kinases
Non-Small Cell Lung Carcinoma
Smoke
Tobacco Products
Lung Neoplasms

Common errors in mass spectrometry-based analysis of post-translational modifications

Kim, M. S., Zhong, J. & Pandey, A. Mar 1 2016 In : Proteomics. 16, 5, p. 700-714 15 p.

Research output: Contribution to journalArticle

Post Translational Protein Processing
Mass spectrometry
Mass Spectrometry
Biological Phenomena
Proteome

Dysregulation of splicing proteins in head and neck squamous cell carcinoma

Radhakrishnan, A., Nanjappa, V., Raja, R., Sathe, G., Chavan, S., Nirujogi, R. S., Patil, A. H., Solanki, H., Renuse, S., Sahasrabuddhe, N. A., Mathur, P. P., Prasad, T. S. K., Kumar, P., Califano, J. A., Sidransky, D., Pandey, A., Gowda, H. & Chatterjee, A. Feb 1 2016 In : Cancer Biology and Therapy. 17, 2, p. 219-229 11 p.

Research output: Contribution to journalArticle

Protein Splicing
Protein Kinases
Cell Line
Phosphotransferases
Carcinoma, squamous cell of head and neck

How Does Chronic Cigarette Smoke Exposure Affect Human Skin? A Global Proteomics Study in Primary Human Keratinocytes

Rajagopalan, P., Nanjappa, V., Raja, R., Jain, A. P., Mangalaparthi, K. K., Sathe, G. J., Babu, N., Patel, K., Cavusoglu, N., Soeur, J., Pandey, A., Roy, N., Breton, L., Chatterjee, A., Misra, N. & Gowda, H. Nov 1 2016 In : OMICS A Journal of Integrative Biology. 20, 11, p. 615-626 12 p.

Research output: Contribution to journalArticle

Keratinocytes
Smoke
Tobacco Products
Proteomics
Skin
Sporozoites
Glyceraldehyde-3-Phosphate Dehydrogenases
Plasmodium
Malaria
Kupffer Cells

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

the CPTAC Investigators Jul 28 2016 In : Cell. 166, 3, p. 755-765 11 p.

Research output: Contribution to journalArticle

Ovarian Neoplasms
Genes
Genome
Proteome
Proteomics

Loss of C9orf72 Enhances Autophagic Activity via Deregulated mTOR and TFEB Signaling

Ugolino, J., Ji, Y. J., Conchina, K., Chu, J., Nirujogi, R. S., Pandey, A., Brady, N. R., Hamacher-Brady, A. & Wang, J. Nov 1 2016 In : PLoS Genetics. 12, 11, e1006443

Research output: Contribution to journalArticle

Transcription Factors
transcription factors
autophagy
Autophagy
protein

Proteomic profiling of retinoblastoma by high resolution mass spectrometry

Danda, R., Ganapathy, K., Sathe, G., Madugundu, A. K., Ramachandran, S., Krishnan, U. M., Khetan, V., Rishi, P., Keshava Prasad, T. S., Pandey, A., Krishnakumar, S., Gowda, H. & Elchuri, S. V. Oct 26 2016 In : Clinical Proteomics. 13, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Retinoblastoma
Proteomics
Mass spectrometry
Mass Spectrometry
Proteins

PyQuant: A versatile framework for analysis of quantitative mass spectrometry data

Mitchell, C. J., Kim, M. S., Na, C. H. & Pandey, A. Aug 1 2016 In : Molecular and Cellular Proteomics. 15, 8, p. 2829-2838 10 p.

Research output: Contribution to journalArticle

Mass spectrometry
Mass Spectrometry
Proteomics
Pipelines
Ions

Synovial fluid proteome in rheumatoid arthritis

Bhattacharjee, M., Balakrishnan, L., Renuse, S., Advani, J., Goel, R., Sathe, G., Keshava Prasad, T. S., Nair, B., Jois, R., Shankar, S. & Pandey, A. Jun 5 2016 In : Clinical Proteomics. 13, 1, 13

Research output: Contribution to journalArticle

Synovial Fluid
Proteome
Rheumatoid Arthritis
Fluids
Proteins

Using quantitative seroproteomics to identify antibody biomarkers in pancreatic cancer

Jhaveri, D. T., Kim, M. S., Thompson, E. D., Huang, L., Sharma, R., Klein, A. P., Zheng, L., Le, D. T., Laheru, D. A., Pandey, A., Jaffee, E. M. & Anders, R. A. Mar 1 2016 In : Cancer immunology research. 4, 3, p. 225-233 9 p.

Research output: Contribution to journalArticle

Pancreatic Neoplasms
Biomarkers
Immunoprecipitation
Antibodies
Cancer Vaccines
2015

Ablation of Dicer leads to widespread perturbation of signaling pathways

Sahasrabuddhe, N. A., Huang, T. C., Kumar, P., Yang, Y., Ghosh, B., Leach, S. D., Chaerkady, R. & Pandey, A. Jun 14 2015 In : Biochemical and Biophysical Research Communications. 463, 3, p. 389-394 6 p.

Research output: Contribution to journalArticle

Phosphotyrosine
Ablation
MicroRNAs
Down-Regulation
Platelet-Derived Growth Factor alpha Receptor

Activating mutations in PIK3CA lead to widespread modulation of the tyrosine phosphoproteome

Zahari, M. S., Wu, X., Blair, B. G., Pinto, S. M., Nirujogi, R. S., Jelinek, C. A., Malhotra, R., Kim, M. S., Park, B. H. & Pandey, A. Sep 4 2015 In : Journal of Proteome Research. 14, 9, p. 3882-3891 10 p.

Research output: Contribution to journalArticle

Tyrosine
Modulation
Mutation
Phosphorylation
Phosphotransferases

A knowledgebase resource for interleukin-17 family mediated signaling

Sharma, J., Balakrishnan, L., Datta, K. K., Sahasrabuddhe, N. A., Khan, A. A., Sahu, A., Singhal, A., Getnet, D., Raju, R., Chatterjee, A., Gowda, H., Keshava Prasad, T. S., Shankar, S. & Pandey, A. Jun 16 2015 In : Journal of Cell Communication and Signaling. 9, 3, p. 291-296 6 p.

Research output: Contribution to journalArticle

Knowledge Bases
Interleukin-17
Cytokines
Ligands
Th17 Cells

A multi-omic analysis of human naïve CD4+ T cells

Mitchell, C. J. , Getnet, D. , Kim, M. S. , Manda, S. S. , Kumar, P. , Huang, T. C. , Pinto, S. M. , Nirujogi, R. S. , Iwasaki, M. , Shaw, P. G. , Wu, X. , Zhong, J. , Chaerkady, R. , Marimuthu, A. , Muthusamy, B. , Sahasrabuddhe, N. A. , Raju, R. , Bowman, C. , Danilova, L. , Cutler, J. & 15 others Kelkar, D. S., Drake, C. G., Prasad, T. S. K., Marchionni, L., Murakami, P. N., Scott, A. F., Shi, L., Thierry-Mieg, J., Thierry-Mieg, D., Irizarry, R., Cope, L., Ishihama, Y., Wang, C., Gowda, H. & Pandey, A. Nov 6 2015 (Accepted/In press) In : BMC Systems Biology.

Research output: Contribution to journalArticle

T-cells
T-Lymphocytes
RNA
Proteins
Genome

A network map of Interleukin-10 signaling pathway

Verma, R., Balakrishnan, L., Sharma, K., Khan, A. A., Advani, J., Gowda, H., Tripathy, S. P., Suar, M., Pandey, A., Gandotra, S., Prasad, T. S. K. & Shankar, S. Aug 8 2015 (Accepted/In press) In : Journal of Cell Communication and Signaling.

Research output: Contribution to journalArticle

Interleukin-10
Interleukin-10 Receptors
Cytokines
Leishmania donovani
Signal transduction

A pathway map of glutamate metabolism

Yelamanchi, S. D., Jayaram, S., Thomas, J. K., Gundimeda, S., Khan, A. A., Singhal, A., Keshava Prasad, T. S., Pandey, A., Somani, B. L. & Gowda, H. Dec 3 2015 (Accepted/In press) In : Journal of Cell Communication and Signaling. p. 1-7 7 p.

Research output: Contribution to journalArticle

Metabolism
Glutamic Acid
Enzymes
Post Translational Protein Processing
Gyrate Atrophy

A phosphoproteomic screen demonstrates differential dependence on HER3 for MAP kinase pathway activation by distinct PIK3CA mutations

Blair, B. G., Wu, X., Zahari, M. S., Mohseni, M., Cidado, J., Wong, H. Y., Beaver, J. A., Cochran, R. L., Zabransky, D. J., Croessmann, S., Chu, D., Toro, P. V., Cravero, K., Pandey, A. & Park, B. H. Jan 1 2015 In : Proteomics. 15, 2-3, p. 318-326 9 p.

Research output: Contribution to journalArticle

Phosphorylation
Phosphatidylinositol 3-Kinases
Phosphotransferases
Chemical activation
Mutation