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2018

2D Modeling and Correction of Fan-Beam Scan Geometry in OCT

Chen, M., Gee, J. C., Prince, J. L. & Aguirre, G. K., Jan 1 2018, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Bogunovic, H., Snead, D., Garvin, M. K., Chen, X. J., Ciompi, F., Xu, Y., Maier-Hein, L., Veta, M., Trucco, E., Stoyanov, D., Rajpoot, N., van der Laak, J., Martel, A. & McKenna, S. (eds.). Springer Verlag, p. 328-335 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11039 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fans
Geometry
Modeling
Retina
Landmarks

3D Measurements of Acceleration-Induced Brain Deformation via Harmonic Phase Analysis and Finite-Element Models

Gomez, A. D., Knutsen, A., Xing, F., Chan, D., Lu, Y. C., Pham, D., Bayly, P. V. & Prince, J. L., Jan 1 2018, (Accepted/In press) In : IEEE Transactions on Biomedical Engineering.

Research output: Contribution to journalArticle

Brain
Magnetic resonance
Imaging techniques
Motion estimation
Sensors

A deep learning based anti-aliasing self super-resolution algorithm for MRI

Zhao, C., Carass, A., Dewey, B. E., Woo, J., Oh, J., Calabresi, P., Reich, D. S., Sati, P., Pham, D. L. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Schnabel, J. A., Davatzikos, C., Alberola-López, C., Fichtinger, G. & Frangi, A. F. (eds.). Springer Verlag, p. 100-108 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Anti-aliasing
Aliasing
Super-resolution
Magnetic resonance
Magnetic resonance imaging

A novel filtering approach for 3D harmonic phase analysis of tagged MRI

Wang, X., Stone, M. L., Prince, J. L. & Gomez, A. D., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057414

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Benchmarking
Magnetic resonance
magnetic resonance
High pass filters
Magnetic Resonance Imaging

A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI

Woo, J., Prince, J. L., Stone, M., Xing, F., Gomez, A. D., Green, J. R., Hartnick, C. J., Brady, T. J., Reese, T. G., Wedeen, V. J. & El Fakhri, G., Sep 17 2018, (Accepted/In press) In : IEEE transactions on medical imaging.

Research output: Contribution to journalArticle

Factorization
Tongue
Muscle
Magnetic Resonance Imaging
Muscles

Atlas of acceleration-induced brain deformation from measurements in vivo

Gomez, A. D., Knutsen, A., Chan, D., Lu, Y. C., Pham, D. L., Bayly, P. & Prince, J. L., May 14 2018, Computational Biomechanics for Medicine: Measurements, Models, and Predictions. Springer International Publishing, p. 3-14 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Atlases
brain
Brain
templates
acceleration measurement

Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation

Zuo, L., Carass, A., Han, S. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 10578. 105780D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hidden Markov models
cerebellum
delineation
Cerebellum
Image classification

Brain and retinal atrophy in African-Americans versus Caucasian-Americans with multiple sclerosis: A longitudinal study

Caldito, N. G., Saidha, S., Sotirchos, E. S., Dewey, B. E., Cowley, N. J., Glaister, J., Fitzgerald, K. C., Al-Louzi, O., Nguyen, J., Rothman, A., Ogbuokiri, E., Fioravante, N., Feldman, S., Kwakyi, O., Risher, H., Kimbrough, D., Frohman, T. C., Frohman, E., Balcer, L., Crainiceanu, C. & 7 othersVan Zijl, P. C., Mowry, E. M., Reich, D. S., Oh, J., Pham, D. L., Prince, J. L. & Calabresi, P. A., Nov 1 2018, In : Brain. 141, 11, p. 3115-3129 15 p.

Research output: Contribution to journalArticle

African Americans
Multiple Sclerosis
Atrophy
Longitudinal Studies
Brain

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images

Carass, A., Cuzzocreo, J. L., Han, S., Hernandez-Castillo, C. R., Rasser, P. E., Ganz, M., Beliveau, V., Dolz, J., Ben Ayed, I., Desrosiers, C., Thyreau, B., Romero, J. E., Coupé, P., Manjón, J. V., Fonov, V. S., Collins, D. L., Ying, S. H., Onyike, C. U., Crocetti, D., Landman, B. A. & 3 othersMostofsky, S. H., Thompson, P. M. & Prince, J. L., Dec 1 2018, In : NeuroImage. 183, p. 150-172 23 p.

Research output: Contribution to journalArticle

Cerebellum
Magnetic Resonance Spectroscopy
Pathology
Cerebellar Ataxia
Autistic Disorder

Cross-modality image synthesis from unpaired data using cyclegan: Effects of gradient consistency loss and training data size

Hiasa, Y., Otake, Y., Takao, M., Matsuoka, T., Takashima, K., Carass, A., Prince, J. L., Sugano, N. & Sato, Y., Jan 1 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 31-41 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modality
Synthesis
Gradient
Magnetic resonance imaging
Muscle

Deep harmonization of inconsistent mr data for consistent volume segmentation

Dewey, B. E., Zhao, C., Carass, A., Oh, J., Calabresi, P., Van Zijl, P. C. & Prince, J. L., Jan 1 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 20-30 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance
Inconsistent
Image analysis
Learning systems
Brain

Deformable model reconstruction of the subarachnoid space

Glaister, J., Shao, M., Li, X., Carass, A., Roy, S., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 1057431

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Subarachnoid Space
Magnetic resonance imaging
Neurodegenerative diseases
Cerebrospinal fluid
Volume measurement

Dice overlap measures for objects of unknown number: Application to lesion segmentation

Oguz, I., Carass, A., Pham, D. L., Roy, S., Subbana, N., Calabresi, P., Yushkevich, P. A., Shinohara, R. T. & Prince, J. L., Jan 1 2018, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 3rd International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Revised Selected Papers. Springer Verlag, p. 3-14 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10670 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dice
Overlap
Segmentation
Unknown
Image segmentation

Dictionary-based fiber orientation estimation with improved spatial consistency

Ye, C. & Prince, J. L., Feb 1 2018, In : Medical Image Analysis. 44, p. 41-53 13 p.

Research output: Contribution to journalArticle

Fiber reinforced materials
Glossaries
Diffusion Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques

Improving self super resolution in magnetic resonance images

Goyal, S., Zhao, C., Jog, A., Prince, J. L. & Carass, A., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 10578. 1057814

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance
Image quality
magnetic resonance
Magnetic Resonance Spectroscopy
Post and Core Technique

Intensity inhomogeneity correction of SD-OCT data using macular flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S., Calabresi, P. & Prince, J. L., Jan 1 2018, In : Medical Image Analysis. 43, p. 85-97 13 p.

Research output: Contribution to journalArticle

Optical tomography
Optical Coherence Tomography
Retina

Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT

Reaungamornrat, S., Carass, A., He, Y., Saidha, S., Calabresi, P. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741B

Research output: Chapter in Book/Report/Conference proceedingConference contribution

retina
Image registration
Image quality
scanners
Retina

Inverse biomechanical modeling of the tongue via machine learning and synthetic training data

Tolpadi, A. A., Stone, M. L., Carass, A., Prince, J. L. & Gomez, A. D., Jan 1 2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). SPIE, Vol. 10576. 1057606

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Flaps
machine learning
tongue
Magnetic resonance
Tongue

Laplace-based modeling of fiber orientation in the tongue

Gomez, A. D., Elsaid, N., Stone, M. L., Zhuo, J. & Prince, J. L., Aug 1 2018, In : Biomechanics and Modeling in Mechanobiology. 17, 4, p. 1119-1130 12 p.

Research output: Contribution to journalArticle

Fiber Orientation
Fiber reinforced materials
Laplace
Tongue
Fiber

Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas

Shao, M., Carass, A., Li, X., Dewey, B. E., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10578. 105780F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Normal Pressure Hydrocephalus
Atlases
Hydrocephalus
brain
Brain

Multi-layer fast level set segmentation for macular OCT

Liu, Y., Carass, A., Solomon, S., Saidha, S., Calabresi, P. & Prince, J. L., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 1445-1448 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
Retina
Experiments

Quantifying tensor field similarity with global distributions and optimal transport

Gomez, A. D., Stone, M. L., Bayly, P. V. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Fichtinger, G., Davatzikos, C., Alberola-López, C., Frangi, A. F. & Schnabel, J. A. (eds.). Springer Verlag, p. 428-436 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11071 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optimal Transport
Tensors
Tensor
Histogram
Sorting

Self super-resolution for magnetic resonance images using deep networks

Zhao, C., Carass, A., Dewey, B. E. & Prince, J. L., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 365-368 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Magnetic resonance
Image resolution
Magnetic Resonance Spectroscopy
Imaging techniques

Simulation and Synthesis in Medical Imaging

Frangi, A. F., Tsaftaris, S. A. & Prince, J. L., Mar 1 2018, In : IEEE transactions on medical imaging. 37, 3, p. 673-679 7 p.

Research output: Contribution to journalArticle

Medical imaging
Diagnostic Imaging
Cardiology
Oncology
Neurosciences

State-of-the-Art Digital Imaging in Dentistry: Advanced Research of MRI, CT, CBCT, and Digital Intraoral Imaging

Honda, E., Prince, J. L. & Fontanella, V. R. C., Jan 1 2018, In : BioMed research international. 2018, 9057120.

Research output: Contribution to journalEditorial

Dentistry
Magnetic resonance imaging
Imaging techniques
Magnetic Resonance Imaging

Strain map of the tongue in normal and ALS speech patterns from tagged and diffusion MRI

Xing, F., Prince, J. L., Stone, M., Reese, T. G., Atassi, N., Wedeen, V. J., El Fakhri, G. & Woo, J., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057411

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diffusion Magnetic Resonance Imaging
tongue
Amyotrophic Lateral Sclerosis
Tongue
Magnetic resonance imaging

Unpaired brain mr-to-ct synthesis using a structure-constrained cyclegan

Yang, H., Sun, J., Carass, A., Zhao, C., Lee, J., Xu, Z. & Prince, J. L., Jan 1 2018, Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support - 4th International Workshop, DLMIA 2018 and 8th International Workshop, ML-CDS 2018 Held in Conjunction with MICCAI 2018. Maier-Hein, L., Syeda-Mahmood, T., Taylor, Z., Lu, Z., Stoyanov, D., Madabhushi, A., Tavares, J. M. R. S., Nascimento, J. C., Moradi, M., Martel, A., Papa, J. P., Conjeti, S., Belagiannis, V., Greenspan, H., Carneiro, G. & Bradley, A. (eds.). Springer Verlag, p. 174-182 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11045 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computerized Tomography
Computerized tomography
Magnetic Resonance Imaging
Decision Support Systems
Decision support systems
2017

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging

Xing, F., Prince, J. L., Stone, M., Wedeen, V. J., El Fakhri, G. & Woo, J., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cine Magnetic Resonance Imaging
tongue
Atlases
Magnetic resonance
Tongue

Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans

Gonzalez Caldito, N., Antony, B., He, Y., Lang, A., Nguyen, J., Rothman, A., Ogbuokiri, E., Avornu, A., Balcer, L., Frohman, E., Frohman, T. C., Bhargava, P., Prince, J. L., Calabresi, P. & Saidha, S., Dec 15 2017, (Accepted/In press) In : Current Eye Research. p. 1-9 9 p.

Research output: Contribution to journalArticle

Retinaldehyde
Optical Coherence Tomography
Multiple Sclerosis
Nerve Fibers
Ganglia

A supervoxel based random forest synthesis framework for bidirectional MR/CT synthesis

Zhao, C., Carass, A., Lee, J., Jog, A. & Prince, J. L., Jan 1 2017, Simulation and Synthesis in Medical Imaging - 2nd International Workshop, SASHIMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, p. 33-40 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10557 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic Resonance
Random Forest
Computed Tomography
Magnetic resonance
Tomography

A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics

Ganpule, S., Daphalapurkar, N. P., Ramesh, K. T., Knutsen, A. K., Pham, D. L., Bayly, P. V. & Prince, J. L., Jul 1 2017, In : Journal of Neurotrauma. 34, 13, p. 2154-2166 13 p.

Research output: Contribution to journalArticle

Head
Brain
Wounds and Injuries
Diffuse Axonal Injury
Limbic System

Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model

Antony, B. J., Kim, B. J., Lang, A., Carass, A., Prince, J. L. & Zack, D. J., Aug 1 2017, In : PLoS One. 12, 8, e0181059.

Research output: Contribution to journalArticle

clinical trials
Light
longitudinal studies
retina
mice

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dura Mater
Magnetic resonance
magnetic resonance
Brain
Spinal Cord

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J., 2017, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138. 1013813

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
scanners
Software
tomography

Cross contrast multi-channel image registration using image synthesis for MR brain images

Chen, M., Carass, A., Jog, A., Lee, J., Roy, S. & Prince, J. L., Feb 1 2017, In : Medical Image Analysis. 36, p. 2-14 13 p.

Research output: Contribution to journalArticle

Image registration
Brain
Image fusion
Atlases
Proxy

Disease-modifying therapies modulate retinal atrophy in multiple sclerosis: A retrospective study

Button, J., Al-Louzi, O., Lang, A., Bhargava, P., Newsome, S., Frohman, T., Balcer, L. J., Frohman, E. M., Prince, J. L., Calabresi, P. & Saidha, S., Feb 7 2017, In : Neurology. 88, 6, p. 525-532 8 p.

Research output: Contribution to journalArticle

Optical Coherence Tomography
Multiple Sclerosis
Atrophy
Relapsing-Remitting Multiple Sclerosis
Retrospective Studies

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Labels
templates
Labeling
marking

Falx cerebri segmentation via multi-atlas boundary fusion

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L., Jan 1 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M., Duchesne, S., Franz, A., Jannin, P., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 92-99 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlas
Magnetic resonance
Magnetic Resonance Image
Brain
Fusion

Fiber orientation estimation guided by a deep network

Ye, C. & Prince, J. L., Jan 1 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M., Duchesne, S., Franz, A., Jannin, P., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 575-583 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Orientation
Fiber reinforced materials
Glossaries
Magnetic Resonance Imaging
Magnetic resonance

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients

Lang, A., Carass, A., Bittner, A. K., Ying, H. S. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371M

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Retinitis Pigmentosa
Optical tomography
Optical Coherence Tomography
pathology
Pathology

Incompressible phase registration for motion estimation from tagged magnetic resonance images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., 2017, Reconstruction, Segmentation, and Analysis of Medical Images - 1st International Workshops, RAMBO 2016 and HVSMR 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Springer Verlag, Vol. 10129 LNCS. p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10129 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic Resonance Image
Motion Estimation
Motion estimation
Magnetic resonance
Registration
Fluoroscopy
Brachytherapy
Prostate
Seeds
X-Rays

Longitudinal analysis of mouse SDOCT volumes

Antony, B. J., Carass, A., Lang, A., Kim, B. J., Zack, D. J. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
mice
tomography
Animals

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge

Carass, A., Roy, S., Jog, A., Cuzzocreo, J. L., Magrath, E., Gherman, A., Button, J., Nguyen, J., Prados, F., Sudre, C. H., Jorge Cardoso, M., Cawley, N., Ciccarelli, O., Wheeler-Kingshott, C. A. M., Ourselin, S., Catanese, L., Deshpande, H., Maurel, P., Commowick, O., Barillot, C. & 26 othersTomas-Fernandez, X., Warfield, S. K., Vaidya, S., Chunduru, A., Muthuganapathy, R., Krishnamurthi, G., Jesson, A., Arbel, T., Maier, O., Handels, H., Iheme, L. O., Unay, D., Jain, S., Sima, D. M., Smeets, D., Ghafoorian, M., Platel, B., Birenbaum, A., Greenspan, H., Bazin, P. L., Calabresi, P., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L., Mar 1 2017, In : NeuroImage. 148, p. 77-102 26 p.

Research output: Contribution to journalArticle

Multiple Sclerosis
Research Personnel
Research
Datasets

Longitudinal multiple sclerosis lesion segmentation data resource

Carass, A., Roy, S., Jog, A., Cuzzocreo, J. L., Magrath, E., Gherman, A., Button, J., Nguyen, J., Bazin, P. L., Calabresi, P., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L., Jun 1 2017, In : Data in Brief. 12, p. 346-350 5 p.

Research output: Contribution to journalArticle

multiple sclerosis
resources
segmentation
website
expert

Motion estimation with finite-element biomechanical models and tracking constraints from tagged MRI

Gomez, A. D., Xing, F., Chan, D., Pham, D. L., Bayly, P. & Prince, J. L., Apr 29 2017, Computational Biomechanics for Medicine: From Algorithms to Models and Applications. Springer International Publishing, p. 81-90 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Motion estimation
Magnetic resonance imaging

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning

Lee, J., Carass, A., Jog, A., Zhao, C. & Prince, J. L., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331I

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Radiotherapy
Magnetic resonance imaging
planning
radiation therapy

Phase Vector Incompressible Registration Algorithm (PVIRA) for Motion Estimation from Tagged Magnetic Resonance Images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., Jul 2 2017, (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticle

Image registration
Motion estimation
Magnetic resonance
Magnetic Resonance Spectroscopy
Tissue

Preface

Tsaftaris, S. A., Gooya, A., Frangi, A. F. & Prince, J. L., Jan 1 2017, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 10557 LNCS, p. V-VI

Research output: Contribution to journalEditorial

Probabilistic tractography using Lasso bootstrap

Ye, C. & Prince, J. L., Jan 1 2017, In : Medical Image Analysis. 35, p. 544-553 10 p.

Research output: Contribution to journalArticle

Fiber reinforced materials
Diffusion Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques
Uncertainty