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2017

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging

Xing, F., Prince, J. L., Stone, M., Wedeen, V. J., El Fakhri, G. & Woo, J. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331H

Research output: ResearchConference contribution

Cine Magnetic Resonance Imaging
Atlases
Tongue
Magnetic resonance
Imaging techniques

A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics

Ganpule, S., Daphalapurkar, N. P., Ramesh, K. T., Knutsen, A. K., Pham, D. L., Bayly, P. V. & Prince, J. L. Jul 1 2017 In : Journal of Neurotrauma. 34, 13, p. 2154-2166 13 p.

Research output: Research - peer-reviewArticle

Head
Brain
Wounds and Injuries
White Matter
Diffuse Axonal Injury

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371D

Research output: ResearchConference contribution

Dura Mater
Spinal Cord
Magnetic Resonance Spectroscopy
Brain
Magnetic resonance

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J. 2017 Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138, 1013813

Research output: ResearchConference contribution

Optical Coherence Tomography
Software
Databases
scanners
tomography

Cross contrast multi-channel image registration using image synthesis for MR brain images

Chen, M., Carass, A., Jog, A., Lee, J., Roy, S. & Prince, J. L. Feb 1 2017 In : Medical Image Analysis. 36, p. 2-14 13 p.

Research output: Research - peer-reviewArticle

Image registration
Brain
Image fusion
Magnetic resonance
Image analysis

Disease-modifying therapies modulate retinal atrophy in multiple sclerosis: A retrospective study

Button, J., Al-Louzi, O., Lang, A., Bhargava, P., Newsome, S. D., Frohman, T., Balcer, L. J., Frohman, E. M., Prince, J., Calabresi, P. A. & Saidha, S. Feb 7 2017 In : Neurology. 88, 6, p. 525-532 8 p.

Research output: Research - peer-reviewArticle

Multiple Sclerosis
Atrophy
Retrospective Studies
Therapeutics
Optical Coherence Tomography

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371F

Research output: ResearchConference contribution

Labels
templates
Atlases
Labeling
Brain

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients

Lang, A., Carass, A., Bittner, A. K., Ying, H. S. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371M

Research output: ResearchConference contribution

pathology
tomography
Retinitis Pigmentosa
Optical Coherence Tomography
Pathology

Incompressible phase registration for motion estimation from tagged magnetic resonance images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L. 2017 Reconstruction, Segmentation, and Analysis of Medical Images - 1st International Workshops, RAMBO 2016 and HVSMR 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Springer Verlag, Vol. 10129 LNCS, p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10129 LNCS)

Research output: ResearchConference contribution

Magnetic Resonance Image
Motion Estimation
Registration
Motion
Motion estimation
Fluoroscopy
Brachytherapy
Prostate
Seeds
X-Rays

Longitudinal analysis of mouse SDOCT volumes

Antony, B. J., Carass, A., Lang, A., Kim, B. J., Zack, D. J. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371H

Research output: ResearchConference contribution

mice
tomography
Optical Coherence Tomography
Optical tomography
Animals

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge

Carass, A. , Roy, S. , Jog, A. , Cuzzocreo, J. L. , Magrath, E. , Gherman, A. , Button, J. , Nguyen, J. , Prados, F. , Sudre, C. H. , Jorge Cardoso, M. , Cawley, N. , Ciccarelli, O. , Wheeler-Kingshott, C. A. M. , Ourselin, S. , Catanese, L. , Deshpande, H. , Maurel, P. , Commowick, O. , Barillot, C. & 26 others Tomas-Fernandez, X., Warfield, S. K., Vaidya, S., Chunduru, A., Muthuganapathy, R., Krishnamurthi, G., Jesson, A., Arbel, T., Maier, O., Handels, H., Iheme, L. O., Unay, D., Jain, S., Sima, D. M., Smeets, D., Ghafoorian, M., Platel, B., Birenbaum, A., Greenspan, H., Bazin, P. L., Calabresi, P. A., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L. Mar 1 2017 In : NeuroImage. 148, p. 77-102 26 p.

Research output: Research - peer-reviewArticle

Multiple Sclerosis
Datasets
Research Personnel
Research
White Matter

Longitudinal multiple sclerosis lesion segmentation data resource

Carass, A., Roy, S., Jog, A., Cuzzocreo, J. L., Magrath, E., Gherman, A., Button, J., Nguyen, J., Bazin, P. L., Calabresi, P. A., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L. Jun 1 2017 In : Data in Brief. 12, p. 346-350 5 p.

Research output: Research - peer-reviewArticle

multiple sclerosis
resources
segmentation
time
website

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning

Lee, J., Carass, A., Jog, A., Zhao, C. & Prince, J. L. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331I

Research output: ResearchConference contribution

Radiotherapy
Magnetic resonance imaging
Planning
planning
radiation therapy

Phase Vector Incompressible Registration Algorithm (PVIRA) for Motion Estimation from Tagged Magnetic Resonance Images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L. Jul 2 2017 (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Research - peer-reviewArticle

Image registration
Motion estimation
Magnetic resonance
Magnetic Resonance Spectroscopy
Tissue

Probabilistic tractography using Lasso bootstrap

Ye, C. & Prince, J. L. Jan 1 2017 In : Medical Image Analysis. 35, p. 544-553 10 p.

Research output: Research - peer-reviewArticle

Fiber reinforced materials
alachlor
Imaging techniques
Diffusion Magnetic Resonance Imaging
Magnetic resonance

Random forest regression for magnetic resonance image synthesis

Jog, A., Carass, A., Roy, S., Pham, D. L. & Prince, J. L. Jan 1 2017 In : Medical Image Analysis. 35, p. 475-488 14 p.

Research output: Research - peer-reviewArticle

Magnetic resonance
Tissue
Imaging techniques
Magnetic Resonance Spectroscopy
Forests

Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)

Pereira, L., Airan, R. D., Fishman, A., Pillai, J. J., Kansal, K., Onyike, C. U., Prince, J. L., Ying, S. H. & Sair, H. I. 2017 (Accepted/In press) In : Human Brain Mapping.

Research output: Research - peer-reviewArticle

Ataxia
Cognitive Dysfunction
Executive Function
Magnetic Resonance Imaging
Psychomotor Performance

Structural cerebellar correlates of cognitive and motor dysfunctions in cerebellar degeneration

Kansal, K., Yang, Z., Fishman, A. M., Sair, H. I., Ying, S. H., Jedynak, B. M., Prince, J. L. & Onyike, C. U. Mar 1 2017 In : Brain : a journal of neurology. 140, 3, p. 707-720 14 p.

Research output: Research - peer-reviewArticle

Degeneration
Cerebellar Diseases
Cognitive Dysfunction
Short-Term Memory
Cerebellum

Test suite for image-based motion estimation of the brain and tongue

Ramsey, J., Prince, J. L. & Gomez, A. D. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371G

Research output: ResearchConference contribution

Motion estimation
Brain
tongue
brain
Tongue

Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort

Glaister, J., Carass, A., NessAiver, T., Stough, J. V., Saidha, S., Calabresi, P. A. & Prince, J. L. Sep 1 2017 In : NeuroImage. 158, p. 430-440 11 p.

Research output: Research - peer-reviewArticle

Validation Studies
Thalamus
Diffusion Tensor Imaging
Atlases
Multiple Sclerosis
2016
Bayes Theorem
White Matter
Fiber reinforced materials
Diffusion Magnetic Resonance Imaging
Diffusion Tensor Imaging

A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging

Bilgel, M., Prince, J. L., Wong, D. F., Resnick, S. M. & Jedynak, B. M. Jul 1 2016 In : NeuroImage. 134, p. 658-670 13 p.

Research output: Research - peer-reviewArticle

Amyloid
Brain
Neuroimaging
Biomarkers
Parietal Lobe

Analysis of 3-D tongue motion from tagged and cine magnetic resonance images

Xing, F., Woo, J., Lee, J., Murano, E. Z., Stone, M. & Prince, J. L. Jun 1 2016 In : Journal of Speech, Language, and Hearing Research. 59, 3, p. 468-479 12 p.

Research output: Research - peer-reviewArticle

Tongue
Magnetic Resonance Spectroscopy
Group
Muscles
evaluation

A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI

Woo, J., Xing, F., Lee, J., Stone, M. & Prince, J. L. Apr 10 2016 (Accepted/In press) In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. p. 1-12 12 p.

Research output: Research - peer-reviewArticle

Magnetic resonance
Imaging techniques
Statistical Models
Cine Magnetic Resonance Imaging
Atlases

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction

Abulnaga, S. M., Yang, Z., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L. 2016 Medical Imaging 2016: Computer-Aided Diagnosis. SPIE, Vol. 9785, 97852P

Research output: ResearchConference contribution

Cerebellar Diseases
Cerebellum
Atrophy
regression analysis
Spinocerebellar Ataxias

Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease

Yang, Z., Ye, C., Bogovic, J. A., Carass, A., Jedynak, B. M., Ying, S. H. & Prince, J. L. Feb 15 2016 In : NeuroImage. 127, p. 435-444 10 p.

Research output: Research - peer-reviewArticle

Cerebellar Diseases
Spinocerebellar Ataxias
Cerebellum
Atrophy
Atlases

Combined registration and motion correction of longitudinal retinal OCT data

Lang, A., Carass, A., Al-Louzi, O., Bhargava, P., Solomon, S. D., Calabresi, P. A. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840X

Research output: ResearchConference contribution

tomography
Optical tomography
Optical Coherence Tomography
Thickness measurement
Eye movements

Combining multi-atlas segmentation with brain surface estimation

Huo, Y., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840E

Research output: ResearchConference contribution

Atlases
Brain
brain
Surface reconstruction
Labels

Consistent cortical reconstruction and multi-atlas brain segmentation

Huo, Y., Plassard, A. J., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A. Apr 5 2016 (Accepted/In press) In : NeuroImage.

Research output: Research - peer-reviewArticle

Atlases
Brain
Population
White Matter
Datasets

CT and MRI fusion for postimplant prostate brachytherapy evaluation

Dehghan, E., Le, Y., Lee, J., Song, D. Y., Fichtinger, G. & Prince, J. L. Jun 15 2016 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June, p. 625-628 4 p. 7493345

Research output: ResearchConference contribution

Magnetic resonance imaging
Seed
Fusion reactions
Brachytherapy
Prostate

Effects of spatial resolution on image registration

Zhao, C., Carass, A., Jog, A. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840Y

Research output: ResearchConference contribution

spatial resolution
Spatial Analysis
Image registration
random noise
estimates

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L. Aug 1 2016 In : Medical Image Analysis. 32, p. 243-256 14 p.

Research output: Research - peer-reviewArticle

Diffusion Magnetic Resonance Imaging
Fiber reinforced materials
Noise
Magnetic resonance
Imaging techniques

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L. 2016 Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none, p. 87-96 10 p. (Mathematics and Visualization; vol. none)

Research output: ResearchConference contribution

Fiber Orientation
Fiber reinforced materials
Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques

Improving cerebellar segmentation with statistical fusion

Plassard, A. J., Yang, Z., Prince, J. L., Claassen, D. O. & Landman, B. A. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97842R

Research output: ResearchConference contribution

Iterative methods
Fusion reactions
Imaging techniques
fusion
Population

Individual estimates of age at detectable amyloid onset for risk factor assessment

Bilgel, M., An, Y., Zhou, Y., Wong, D. F., Prince, J. L., Ferrucci, L. & Resnick, S. M. 2016 (Accepted/In press) In : Alzheimer's and Dementia.

Research output: Research - peer-reviewArticle

Age of Onset
Amyloid
2-(4'-(methylamino)phenyl)-6-hydroxybenzothiazole
Baltimore
Sex Education

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S. D., Calabresi, P. A. & Prince, J. L. Jun 15 2016 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June, p. 197-200 4 p. 7493243

Research output: ResearchConference contribution

Optical tomography
Optical Coherence Tomography
Magnetic resonance imaging
Imaging techniques
Processing

Investigation of bias in continuous medical image label fusion

Xing, F., Prince, J. L. & Landman, B. A. Jun 1 2016 In : PLoS One. 11, 6, e0155862

Research output: Research - peer-reviewArticle

Labels
Fusion reactions
methodology
Medical imaging
Labeling

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization

Yang, Z., Abulnaga, S. M., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C., Ying, S. H. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840P

Research output: ResearchConference contribution

Cerebellar Ataxia
Ataxia
Atrophy
ataxia
atrophy

MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery

Reaungamornrat, S., De Silva, T., Uneri, A., Vogt, S., Kleinszig, G., Khanna, A. J., Wolinsky, J. P., Prince, J. L. & Siewerdsen, J. H. Nov 1 2016 In : IEEE Transactions on Medical Imaging. 35, 11, p. 2413-2424 12 p., 7484313

Research output: Research - peer-reviewArticle

Computer-Assisted Surgery
Spine
Surgery
Clinical Studies
Anatomy

MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery

Reaungamornrat, S., De Silva, T., Uneri, A., Wolinsky, J. P., Khanna, A. J., Kleinszig, G., Vogt, S., Prince, J. L. & Siewerdsen, J. H. 2016 Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 9786, 97860H

Research output: ResearchConference contribution

spine
surgery
Computer-Assisted Surgery
Spine
Image registration

Pain, cognition and quality of life associate with structural measures of brain volume loss in multiple sclerosis

Fritz, N. E., Roy, S., Keller, J., Prince, J., Calabresi, P. A. & Zackowski, K. M. Oct 14 2016 In : NeuroRehabilitation. 39, 4, p. 535-544 10 p.

Research output: Research - peer-reviewArticle

Cognition
Multiple Sclerosis
Quality of Life
Pain
Brain

Performance evaluation of MIND demons deformable registration of MR and CT images in spinal interventions

Reaungamornrat, S., De Silva, T., Uneri, A., Goerres, J., Jacobson, M., Ketcha, M., Vogt, S., Kleinszig, G., Khanna, A. J., Wolinsky, J. P., Prince, J. L. & Siewerdsen, J. H. Nov 3 2016 In : Physics in Medicine and Biology. 61, 23, p. 8276-8297 22 p.

Research output: Research - peer-reviewArticle

Spine
Computer-Assisted Surgery
Anatomy
Nerve Tissue
Blood Vessels

Preface

Tsaftaris, S. A., Gooya, A., Frangi, A. F. & Prince, J. L. 2016 In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9968 LNCS, p. V-VI

Research output: Research - peer-reviewEditorial

Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles

Li, K., Ye, C., Yang, Z., Carass, A., Ying, S. H. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97841H

Research output: ResearchConference contribution

Quality assurance
assurance
Diffusion tensor imaging
Logistics
Classifiers

Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling

Ellingsen, L. M., Roy, S., Carass, A., Blitz, A. M., Pham, D. L. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840G

Research output: ResearchConference contribution

Normal Pressure Hydrocephalus
Atlases
Labeling
Tissue
marking

Segmentation of thalamus from MR images via task-driven dictionary learning

Liu, L., Glaister, J., Sun, X., Carass, A., Tran, T. D. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97843H

Research output: ResearchConference contribution

thalamus
dictionaries
learning
Glossaries
Thalamus

Self super-resolution for magnetic resonance images

Jog, A., Carass, A. & Prince, J. L. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9902 LNCS, p. 553-560 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9902 LNCS)

Research output: ResearchConference contribution

Magnetic Resonance Image
Super-resolution
Magnetic resonance
Optical resolving power
Image resolution

Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes

Antony, B. J., Lang, A., Swingle, E. K., Al-Louzi, O., Carass, A., Solomon, S., Calabresi, P. A., Saidha, S. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97841C

Research output: ResearchConference contribution

Macular Edema
Optical tomography
edema
Imaging techniques
Optical Coherence Tomography

Structure and variability in human tongue muscle anatomy

Stone, M., Woo, J., Lee, J., Poole, T., Seagraves, A., Chung, M., Kim, E., Murano, E. Z., Prince, J. L. & Blemker, S. S. Mar 30 2016 (Accepted/In press) In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. p. 1-9 9 p.

Research output: Research - peer-reviewArticle

Tongue
Anatomy
Muscles
Muscle
Respiration