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2017

Abnormal brain structure implicated in patients with functional dyspepsia

Liu, P., Wang, G., Zeng, F., Liu, Y., Fan, Y., Wei, Y., Qin, W. & Calhoun, V. D. Mar 28 2017 (Accepted/In press) In : Brain Imaging and Behavior. p. 1-8 8 p.

Research output: Research - peer-reviewArticle

Dyspepsia
Brain
Prefrontal Cortex
Parietal Lobe
Somatosensory Cortex

Adaptive independent vector analysis for multi-subject complex-valued fMRI data

Kuang, L. D., Lin, Q. H., Gong, X. F., Cong, F. & Calhoun, V. D. Apr 1 2017 In : Journal of Neuroscience Methods. 281, p. 49-63 15 p.

Research output: Research - peer-reviewArticle

Magnetic Resonance Imaging
Normal Distribution
Noise

Adaptive sparse multiple canonical correlation analysis with application to imaging (epi)genomics study of schizophrenia

Hu, W., Lin, D., Cao, S., Liu, J. Y., Chen, J., Calhoun, V. & Wang, Y. Nov 7 2017 (Accepted/In press) In : IEEE Transactions on Biomedical Engineering.

Research output: Research - peer-reviewArticle

Imaging techniques
Genomics
Feature extraction
Brain
Data integration

Adaptive windowing and windowless approaches to estimate dynamic functional brain connectivity

Yaesoubi, M. & Calhoun, V. D. 2017 Wavelets and Sparsity XVII. SPIE, Vol. 10394, 1039411

Research output: ResearchConference contribution

Connectivity
Estimate
Brain
brain
estimates

A deep-learning approach to translate between brain structure and functional connectivity

Calhoun, V. D., Amin, M. F., Hjelm, D., Damaraju, E. & Plis, S. M. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 6155-6159 5 p. 7953339

Research output: ResearchConference contribution

Brain
Deep learning
Magnetic resonance imaging
Dynamic models
Magnetic Resonance Imaging

A graph theoretical approach for performance comparison of ICA for fMRI analysis

Long, Q., Bhinge, S., Levin-Schwartz, Y., Calhoun, V. D. & Adali, T. May 10 2017 2017 51st Annual Conference on Information Sciences and Systems, CISS 2017. Institute of Electrical and Electronics Engineers Inc., 7926108

Research output: ResearchConference contribution

Graph
Independent component analysis
Functional magnetic resonance imaging
Magnetic Resonance Imaging
Entropy

A joint time-frequency analysis of resting-state functional connectivity reveals novel patterns of connectivity shared between or unique to schizophrenia patients and healthy controls

Yaesoubi, M., Miller, R. L., Bustillo, J., Lim, K. O., Vaidya, J. & Calhoun, V. D. 2017 In : NeuroImage: Clinical. 15, p. 761-768 8 p.

Research output: Research - peer-reviewArticle

Schizophrenia
Joints
Brain
Population
Brain Diseases

An information theory framework for dynamic functional domain connectivity

Vergara, V. M., Miller, R. & Calhoun, V. Jun 1 2017 In : Journal of Neuroscience Methods. 284, p. 103-111 9 p.

Research output: Research - peer-reviewArticle

Information Theory
Brain
Information Dissemination
Basal Ganglia
Cerebellum

A Realistic Framework for Investigating Decision Making in the Brain with High Spatiotemporal Resolution Using Simultaneous EEG/fMRI and Joint ICA

Kyathanahally, S. P., Franco-Watkins, A., Zhang, X., Calhoun, V. D. & Deshpande, G. May 1 2017 In : IEEE Journal of Biomedical and Health Informatics. 21, 3, p. 814-825 12 p., 7509628

Research output: Research - peer-reviewArticle

Independent component analysis
Brain
Decision making
Magnetic Resonance Imaging
Decision Making

A robust sparse-modeling framework for estimating schizophrenia biomarkers from fMRI

Dillon, K., Calhoun, V. & Wang, Y. P. Jan 30 2017 In : Journal of Neuroscience Methods. 276, p. 46-55 10 p.

Research output: Research - peer-reviewArticle

Schizophrenia
Biomarkers
Magnetic Resonance Imaging
Neuroimaging
Brain

Biclustered independent component analysis for complex biomarker and subtype identification from structural magnetic resonance images in schizophrenia

Gupta, C. N., Castro, E., Rachkonda, S., van Erp, T. G. M., Potkin, S., Ford, J. M., Mathalon, D., Lee, H. J., Mueller, B. A., Greve, D. N., Andreassen, O. A., Agartz, I., Mayer, A. R., Stephen, J., Jung, R. E., Bustillo, J., Calhoun, V. D. & Turner, J. A. Sep 26 2017 In : Frontiers in Psychiatry. 8, SEP, 179

Research output: Research - peer-reviewArticle

Schizophrenia
Magnetic Resonance Spectroscopy
Biomarkers
Prefrontal Cortex
Gray Matter

Characterizing dynamic amplitude of low-frequency fluctuation and its relationship with dynamic functional connectivity: An application to schizophrenia

Fu, Z., Tu, Y., Di, X., Du, Y., Pearlson, G. D., Turner, J. A., Biswal, B. B., Zhang, Z. & Calhoun, V. D. 2017 (Accepted/In press) In : NeuroImage.

Research output: Research - peer-reviewArticle

Schizophrenia
Brain
Mental Disorders
Cognition
Cluster Analysis

Chronnectomic patterns and neural flexibility underlie executive function

Nomi, J. S., Vij, S. G., Dajani, D. R., Steimke, R., Damaraju, E., Rachakonda, S., Calhoun, V. D. & Uddin, L. Q. Feb 15 2017 In : NeuroImage. 147, p. 861-871 11 p.

Research output: Research - peer-reviewArticle

Executive Function
Brain
Arousal
Individuality
Cognition

Co-altered functional networks and brain structure in unmedicated patients with bipolar and major depressive disorders

He, H., Sui, J., du, Y., Yu, Q., Lin, D., Drevets, W. C., Savitz, J. B., Yang, J., Victor, T. A. & Calhoun, V. D. Jun 9 2017 (Accepted/In press) In : Brain Structure and Function. p. 1-14 14 p.

Research output: Research - peer-reviewArticle

Major Depressive Disorder
Brain
Gray Matter
Bipolar Disorder
Occipital Lobe

Cognitive Control, Learning, and Clinical Motor Ratings Are Most Highly Associated with Basal Ganglia Brain Volumes in the Premanifest Huntington's Disease Phenotype

Misiura, M. B., Lourens, S., Calhoun, V. D., Long, J., Bockholt, J., Johnson, H., Zhang, Y., Paulsen, J. S., Turner, J. A., Liu, J., Kara, B., Fall, E. & PREDICT-HD Investigators and Working Group Feb 1 2017 In : Journal of the International Neuropsychological Society. 23, 2, p. 159-170 12 p.

Research output: Research - peer-reviewArticle

Huntington Disease
Basal Ganglia
Learning
Phenotype
Brain

COINSTAC: Decentralizing the future of brain imaging analysis [version 1; referees: 2 approved]

Ming, J., Verner, E., Sarwate, A., Kelly, R., Reed, C., Kahleck, T., Silva, R., Panta, S., Turner, J., Plis, S. & Calhoun, V. 2017 In : F1000Research. 6, 1512

Research output: Research - peer-reviewArticle

Brain
Imaging techniques
Information Dissemination
Neuroimaging
Privacy

Comparing brain graphs in which nodes are regions of interest or independent components: A simulation study

Yu, Q., Du, Y., Chen, J., He, H., Sui, J., Pearlson, G. & Calhoun, V. D. Nov 1 2017 In : Journal of Neuroscience Methods. 291, p. 61-68 8 p.

Research output: Research - peer-reviewArticle

Brain
Magnetic Resonance Imaging
Atlases
Artifacts

Comparison of functional network connectivity and granger causality for resting state fMRI data

Zhang, C., Lin, Q. H., Zhang, C. Y., Hao, Y. G., Gong, X. F., Cong, F. & Calhoun, V. D. 2017 Advances in Neural Networks - ISNN 2017 - 14th International Symposium, ISNN 2017, Proceedings. Springer Verlag, Vol. 10262 LNCS, p. 559-566 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10262 LNCS)

Research output: ResearchConference contribution

Granger Causality
Network Connectivity
Functional Magnetic Resonance Imaging
Connectivity
Magnetic Resonance Imaging

Comparison of IVA and GIG-ICA in brain functional network estimation using fMRI data

Du, Y., Lin, D., Yu, Q., Sui, J., Chen, J., Rachakonda, S., Adali, T. & Calhoun, V. D. May 19 2017 In : Frontiers in Neuroscience. 11, MAY, 267

Research output: Research - peer-reviewArticle

Magnetic Resonance Imaging
Brain
Self-Help Groups
Neuroimaging
Healthy Volunteers

Corrigendum to "Lateralization of resting state networks and relationship to age and gender" [NeuroImage 104 (2015) 310-325]

Agcaoglu, O., Miller, R., Mayer, A. R., Hugdahl, K. & Calhoun, V. D. 2017 (Accepted/In press) In : NeuroImage.

Research output: Research - peer-reviewArticle

Cortical sensitivity to guitar note patterns: EEG entrainment to repetition and key

Bridwell, D. A., Leslie, E., McCoy, D. Q., Plis, S. M. & Calhoun, V. D. Mar 1 2017 In : Frontiers in Human Neuroscience. 11, 90

Research output: Research - peer-reviewArticle

Music
Electroencephalography
Acoustics
Electrodes
Language

Decentralized independent vector analysis

Wojtalewicz, N. P., Silva, R. F., Calhoun, V. D., Sarwate, A. D. & Plis, S. M. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 826-830 5 p. 7952271

Research output: ResearchConference contribution

Blind source separation
Message passing
Communication

Decreased hemispheric connectivity and decreased intra- and inter- hemisphere asymmetry of resting state functional network connectivity in schizophrenia

Agcaoglu, O., Miller, R., Damaraju, E., Rashid, B., Bustillo, J., Cetin, M. S., van Erp, T. G. M., McEwen, S., Preda, A., Ford, J. M., Lim, K. O., Manoach, D. S., Mathalon, D. H., Potkin, S. G. & Calhoun, V. D. Apr 22 2017 (Accepted/In press) In : Brain Imaging and Behavior. p. 1-16 16 p.

Research output: Research - peer-reviewArticle

Schizophrenia
Brain
Magnetic Resonance Imaging
Datasets

Default mode network deactivation to smoking cue relative to food cue predicts treatment outcome in nicotine use disorder

Wilcox, C. E., Claus, E. D., Calhoun, V. D., Rachakonda, S., Littlewood, R. A., Mickey, J., Arenella, P. B., Goodreau, N. & Hutchison, K. E. 2017 (Accepted/In press) In : Addiction Biology.

Research output: Research - peer-reviewArticle

Tobacco Use Disorder
Cues
Smoking
Food
Smoke

Detection of Mild Traumatic Brain Injury by Machine Learning Classification Using Resting State Functional Network Connectivity and Fractional Anisotropy

Vergara, V. M., Mayer, A. R., Damaraju, E., Kiehl, K. A. & Calhoun, V. Mar 1 2017 In : Journal of Neurotrauma. 34, 5, p. 1045-1053 9 p.

Research output: Research - peer-reviewArticle

Brain Concussion
Diffusion Magnetic Resonance Imaging
Anisotropy
Machine Learning
Parietal Lobe

Diagnosing schizophrenia by integrating genomic and imaging data through network fusion

Deng, S. P., Lin, D., Calhoun, V. D. & Wang, Y. P. Jan 17 2017 Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 1307-1313 7 p. 7822707

Research output: ResearchConference contribution

Fusion reactions
Imaging techniques
Schizophrenia
Labels
Neuroimaging

Differentiating emotional processing and attention in psychopathy with functional neuroimaging

Anderson, N. E., Steele, V. R., Maurer, J. M., Rao, V., Koenigs, M. R., Decety, J., Kosson, D. S., Calhoun, V. D. & Kiehl, K. A. Jan 16 2017 (Accepted/In press) In : Cognitive, Affective and Behavioral Neuroscience. p. 1-25 25 p.

Research output: Research - peer-reviewArticle

Functional Neuroimaging
Checklist
Emotions
Up-Regulation
Hares

Disrupted intrinsic connectivity of the periaqueductal gray in patients with functional dyspepsia: A resting-state fMRI study

Liu, P., Wang, G., Liu, Y., Zeng, F., Lin, D., Yang, X., Liang, F., Calhoun, V. D. & Qin, W. 2017 (Accepted/In press) In : Neurogastroenterology and Motility.

Research output: Research - peer-reviewArticle

Periaqueductal Gray
Dyspepsia
Magnetic Resonance Imaging
Prefrontal Cortex
Emotions

Disruption to control network function correlates with altered dynamic connectivity in the wider autism spectrum

de Lacy, N., Doherty, D., King, B. H., Rachakonda, S. & Calhoun, V. D. 2017 In : NeuroImage: Clinical. 15, p. 513-524 12 p.

Research output: Research - peer-reviewArticle

Autistic Disorder
Brain
Neuroimaging
Cues
Biomarkers

EEG Signatures of Dynamic Functional Network Connectivity States

Allen, E. A., Damaraju, E., Eichele, T., Wu, L. & Calhoun, V. D. Feb 22 2017 (Accepted/In press) In : Brain Topography. p. 1-16 16 p.

Research output: Research - peer-reviewArticle

Electroencephalography
Brain
Magnetic Resonance Imaging
Power (Psychology)
Sleep Stages

End-to-end learning of brain tissue segmentation from imperfect labeling

Fedorov, A., Johnson, J., Damaraju, E., Ozerin, A., Calhoun, V. & Plis, S. Jun 30 2017 2017 International Joint Conference on Neural Networks, IJCNN 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-May, p. 3785-3792 8 p. 7966333

Research output: ResearchConference contribution

Labeling
Brain
Tissue
Processing
Deep learning

Enforcing Co-expression Within a Brain-Imaging Genomics Regression Framework

Zille, P., Calhoun, V. D. & Wang, Y. P. Jun 28 2017 (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Research - peer-reviewArticle

Genomics
Neuroimaging
Learning
Brain
Imaging techniques

Flexible large-scale fMRI analysis: A survey

Kim, S. J., Calhoun, V. D. & Adali, T. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 6319-6323 5 p. 7953372

Research output: ResearchConference contribution

Magnetic Resonance Imaging
Brain
Factorization
Tensors
Availability

Functional network connectivity predicts treatment outcome during treatment of nicotine use disorder

Wilcox, C. E., Calhoun, V. D., Rachakonda, S., Claus, E. D., Littlewood, R. A., Mickey, J., Arenella, P. B. & Hutchison, K. E. Jul 30 2017 In : Psychiatry Research - Neuroimaging. 265, p. 45-53 9 p.

Research output: Research - peer-reviewArticle

Tobacco Use Disorder
Gyrus Cinguli
Therapeutics
Prefrontal Cortex
Smoking

Functional Neuroimaging Evidence for Distinct Neurobiological Pathways in Attention-Deficit/Hyperactivity Disorder

Stevens, M. C., Pearlson, G. D., Calhoun, V. D. & Bessette, K. L. 2017 (Accepted/In press) In : Biological Psychiatry: Cognitive Neuroscience and Neuroimaging.

Research output: Research - peer-reviewArticle

Functional Neuroimaging
Attention Deficit Disorder with Hyperactivity
Reward
Brain
Inhibition (Psychology)

Functional overestimation due to spatial smoothing of fMRI data

Liu, P., Calhoun, V. & Chen, Z. Nov 1 2017 In : Journal of Neuroscience Methods. 291, p. 1-12 12 p.

Research output: Research - peer-reviewArticle

Magnetic Resonance Imaging
Noise
Datasets

Fused estimation of sparse connectivity patterns from rest fMRI

Zille, P., Calhoun, V. D., Stephen, J. M., Wilson, T. W. & Wang, Y. P. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 6160-6164 5 p. 7953340

Research output: ResearchConference contribution

Brain
Magnetic Resonance Imaging
Experiments

Fused estimation of sparse connectivity patterns from rest fMRI. Application to comparison of children and adult brains

Zille, P., Calhoun, V. D., Stephen, J. M., Wilson, T. W. & Wang, Y. P. Jun 29 2017 (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Research - peer-reviewArticle

Magnetic Resonance Imaging
Brain
Population
Datasets
Statistical methods

Group information guided ICA shows more sensitivity to group differences than dual-regression

Salman, M. S., Du, Y., Damaraju, E., Lin, Q. & Calhoun, V. D. Jun 15 2017 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 362-365 4 p. 7950538

Research output: ResearchConference contribution

Independent component analysis
Biomarkers
Magnetic Resonance Imaging
Brain
Passive Cutaneous Anaphylaxis

Identifying dynamic functional connectivity biomarkers using GIG-ICA: Application to schizophrenia, schizoaffective disorder, and psychotic bipolar disorder

Du, Y., Pearlson, G. D., Lin, D., Sui, J., Chen, J., Salman, M., Tamminga, C. A., Ivleva, E. I., Sweeney, J. A., Keshavan, M. S., Clementz, B. A., Bustillo, J. & Calhoun, V. D. May 1 2017 In : Human Brain Mapping. 38, 5, p. 2683-2708 26 p.

Research output: Research - peer-reviewArticle

Bipolar Disorder
Psychotic Disorders
Schizophrenia
Biomarkers
Brain

Identifying FMRI dynamic connectivity states using affinity propagation clustering method: Application to schizophrenia

Salman, M. S., Du, Y. & Calhoun, V. D. Jun 16 2017 2017 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 904-908 5 p. 7952287

Research output: ResearchConference contribution

Brain
Biomarkers

Integrating Imaging Genomic Data in the Quest for Biomarkers for Schizophrenia Disease

Deng, S. P., Hu, W., Calhoun, V. D. & Wang, Y. P. Sep 2 2017 (Accepted/In press) In : IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Research output: Research - peer-reviewArticle

Biomarkers
Genomics
Imaging
Imaging techniques
Schizophrenia

Learning schizophrenia imaging genetics data via Multiple Kernel Canonical Correlation Analysis

Richfield, O., Alam, M. A., Calhoun, V. & Wang, Y. P. Jan 17 2017 Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 507-511 5 p. 7822570

Research output: ResearchConference contribution

Schizophrenia
Learning
Imaging techniques
Genetics
DNA Methylation

Longitudinal epigenetic predictors of amygdala: hippocampus volume ratio

Walton, E., Cecil, C. A. M., Suderman, M., Liu, J., Turner, J. A., Calhoun, V., Ehrlich, S., Relton, C. L. & Barker, E. D. 2017 (Accepted/In press) In : Journal of Child Psychology and Psychiatry and Allied Disciplines.

Research output: Research - peer-reviewArticle

Amygdala
Epigenomics
Hippocampus
DNA Methylation
Psychopathology

Machine Learning of Functional Magnetic Resonance Imaging Network Connectivity Predicts Substance Abuse Treatment Completion

Steele, V. R., Maurer, J. M., Arbabshirani, M. R., Claus, E. D., Fink, B. C., Rao, V., Calhoun, V. D. & Kiehl, K. A. 2017 (Accepted/In press) In : Biological Psychiatry: Cognitive Neuroscience and Neuroimaging.

Research output: Research - peer-reviewArticle

Substance-Related Disorders
Magnetic Resonance Imaging
Therapeutics
Machine Learning
Gyrus Cinguli

Magnetoencephalographic and functional MRI connectomics in schizophrenia via intra- and inter-network connectivity

Houck, J. M. , Çetin, M. S. , Bustillo, J. R. , Aine, C. , Cañive, J. , Perrone-Bizzozero, N. , Thoma, R. J. , Houck, J. M. , Çetin, M. S. , Mayer, A. R. , Stephen, J. , Aine, C. , Calhoun, V. D. , Bustillo, J. R. , Cañive, J. , Thoma, R. J. , Brookes, M. J. , Aine, C. , Brookes, M. J. , Çetin, M. S. & 2 others Calhoun, V. D. & Perrone-Bizzozero, N. Jan 15 2017 In : NeuroImage. 145, p. 96-106 11 p.

Research output: Research - peer-reviewArticle

Connectome
Magnetoencephalography
Schizophrenia
Magnetic Resonance Imaging
Neuroimaging

Modality-Dependent Impact of Hallucinations on Low-Frequency Fluctuations in Schizophrenia

Hare, S. M., Ford, J. M., Ahmadi, A., Damaraju, E., Belger, A., Bustillo, J., Lee, H. J., Mathalon, D. H., Mueller, B. A., Preda, A., van Erp, T. G. M., Potkin, S. G., Calhoun, V. D., Turner, J. A. & Functional Imaging Biomedical Informatics Research Network Mar 1 2017 In : Schizophrenia bulletin. 43, 2, p. 389-396 8 p.

Research output: Research - peer-reviewArticle

Hallucinations
Schizophrenia
Hippocampus
Brain
Informatics

Model order effects on independent vector analysis applied to complex-valued fMRI data

Kuang, L. D., Lin, Q. H., Gong, X. F., Chen, Y. G., Cong, F. & Calhoun, V. D. Jun 15 2017 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 81-84 4 p. 7950473

Research output: ResearchConference contribution

Magnetic Resonance Imaging
Independent component analysis
Datasets

Multimodal Fusion with Reference: Searching for Joint Neuromarkers of Working Memory Deficits in Schizophrenia

Qi, S., Calhoun, V. D., van Erp, T. G. M., Bustillo, J., Damaraju, E., Turner, J. A., Du, Y., Yang, J., Chen, J., Yu, Q., Mathalon, D. H., Ford, J. M., Voyvodic, J., Mueller, B. A., Belger, A., McEwen, S., Potkin, S. G., Preda, A., Jiang, T. & Sui, J. Jul 10 2017 (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Research - peer-reviewArticle

Memory Disorders
Short-Term Memory
Schizophrenia
Joints
Brain

Multimodal neural correlates of cognitive control in the Human Connectome Project

Lerman-Sinkoff, D. B., Sui, J., Rachakonda, S., Kandala, S., Calhoun, V. D. & Barch, D. M. Dec 1 2017 In : NeuroImage. 163, p. 41-54 14 p.

Research output: Research - peer-reviewArticle

Connectome
Brain
Magnetic Resonance Imaging
Task Performance and Analysis
Visual Cortex