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  • 2020
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  • Jerry Ladd Prince
2019

Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images

Woo, J., Xing, F., Stone, M., Green, J., Reese, T. G., Brady, T. J., Wedeen, V. J., Prince, J. L. & El Fakhri, G., Jul 4 2019, In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. 7, 4, p. 361-373 13 p.

Research output: Contribution to journalArticle

2018

Strain map of the tongue in normal and ALS speech patterns from tagged and diffusion MRI

Xing, F., Prince, J. L., Stone, M., Reese, T. G., Atassi, N., Wedeen, V. J., El Fakhri, G. & Woo, J., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057411

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Preface

Tsaftaris, S. A., Gooya, A., Frangi, A. F. & Prince, J. L., 2016, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9968 LNCS, p. V-VI

Research output: Contribution to journalEditorial

2019

Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning

Woo, J., Xing, F., Prince, J. L., Stone, M., Green, J. R., Goldsmith, T., Reese, T. G., Wedeen, V. J. & El Fakhri, G., May 1 2019, In : Journal of the Acoustical Society of America. 145, 5, p. EL423-EL429

Research output: Contribution to journalArticle

Open Access
2018

State-of-the-Art Digital Imaging in Dentistry: Advanced Research of MRI, CT, CBCT, and Digital Intraoral Imaging

Honda, E., Prince, J. L. & Fontanella, V. R. C., 2018, In : BioMed research international. 2018, 9057120.

Research output: Contribution to journalEditorial

2016

Structure and variability in human tongue muscle anatomy

Stone, M., Woo, J., Lee, J., Poole, T., Seagraves, A., Chung, M., Kim, E., Murano, E. Z., Prince, J. L. & Blemker, S. S., Mar 30 2016, (Accepted/In press) In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. p. 1-9 9 p.

Research output: Contribution to journalArticle

2017

Test suite for image-based motion estimation of the brain and tongue

Ramsey, J., Prince, J. L. & Gomez, A., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Aquaporin-4 IgG seropositivity is associated with worse visual outcomes after optic neuritis than MOG-IgG seropositivity and multiple sclerosis, independent of macular ganglion cell layer thinning

Sotirchos, E. S., Filippatou, A., Fitzgerald, K. C., Salama, S., Pardo, S., Wang, J., Ogbuokiri, E., Cowley, N. J., Pellegrini, N., Murphy, O. C., Mealy, M. A., Prince, J. L., Levy, M., Calabresi, P. A. & Saidha, S., Jan 1 2019, (Accepted/In press) In : Multiple Sclerosis Journal.

Research output: Contribution to journalArticle

2017

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization

Yang, Z., Abulnaga, S. M., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction

Abulnaga, S. M., Yang, Z., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Computer-Aided Diagnosis. Tourassi, G. D. & Armato, S. G. (eds.). SPIE, 97852P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9785).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS

Fritz, N. E., Eloyan, A., Glaister, J., Dewey, B. E., Al-Louzi, O., Costello, M. G., Chen, M., Prince, J. L., Calabresi, P. A. & Zackowski, K. M., Mar 2019, In : Annals of Clinical and Translational Neurology. 6, 3, p. 586-595 10 p.

Research output: Contribution to journalArticle

Open Access
2018

Intensity inhomogeneity correction of SD-OCT data using macular flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S. D., Calabresi, P. A. & Prince, J. L., Jan 2018, In : Medical image analysis. 43, p. 85-97 13 p.

Research output: Contribution to journalArticle

Multi-layer fast level set segmentation for macular OCT

Liu, Y., Carass, A., Solomon, S., Saidha, S., Calabresi, P. & Prince, J. L., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 1445-1448 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Analysis of 3-D tongue motion from tagged and cine magnetic resonance images

Xing, F., Woo, J., Lee, J., Murano, E. Z., Stone, M. & Prince, J. L., Jun 2016, In : Journal of Speech, Language, and Hearing Research. 59, 3, p. 468-479 12 p.

Research output: Contribution to journalArticle

2019

Hierarchical Parcellation of the Cerebellum

Han, S., Carass, A. & Prince, J. L., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 484-491 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11766 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J., 2017, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138. 1013813

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)

Pereira, L., Airan, R. D., Fishman, A., Pillai, J. J., Kansal, K., Onyike, C. U., Prince, J. L., Ying, S. H. & Sair, H. I., Jun 2017, In : Human Brain Mapping. 38, 6, p. 3001-3010 10 p.

Research output: Contribution to journalArticle

2018

Inverse biomechanical modeling of the tongue via machine learning and synthetic training data

Tolpadi, A. A., Stone, M. L., Carass, A., Prince, J. L. & Gomez, A., Jan 1 2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). SPIE, Vol. 10576. 1057606

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Combining multi-atlas segmentation with brain surface estimation

Huo, Y., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A., 2016, Medical Imaging 2016: Image Processing. Styner, M. A., Angelini, E. D. & Angelini, E. D. (eds.). SPIE, 97840E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9784).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Applications of a deep learning method for anti-aliasing and super-resolution in MRI

Zhao, C., Shao, M., Carass, A., Li, H., Dewey, B. E., Ellingsen, L. M., Woo, J., Guttman, M. A., Blitz, A. M., Stone, M., Calabresi, P. A., Halperin, H. & Prince, J. L., Dec 2019, In : Magnetic Resonance Imaging. 64, p. 132-141 10 p.

Research output: Contribution to journalArticle

2020

Analysis of fiber strain in the human tongue during speech

Gomez, A. D., Stone, M. L., Woo, J., Xing, F. & Prince, J. L., Jun 10 2020, In : Computer Methods in Biomechanics and Biomedical Engineering. 23, 8, p. 312-322 11 p.

Research output: Contribution to journalArticle

Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis

Carass, A., Roy, S., Gherman, A., Reinhold, J. C., Jesson, A., Arbel, T., Maier, O., Handels, H., Ghafoorian, M., Platel, B., Birenbaum, A., Greenspan, H., Pham, D. L., Crainiceanu, C. M., Calabresi, P. A., Prince, J. L., Roncal, W. R. G., Shinohara, R. T. & Oguz, I., Dec 1 2020, In : Scientific reports. 10, 1, 8242.

Research output: Contribution to journalArticle

Open Access
2019

Evaluating the impact of intensity normalization on MR image synthesis

Reinhold, J. C., Dewey, B. E., Carass, A. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109493H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Longitudinal multiple sclerosis lesion segmentation data resource

Carass, A., Roy, S., Jog, A., Cuzzocreo, J. L., Magrath, E., Gherman, A., Button, J., Nguyen, J., Bazin, P. L., Calabresi, P. A., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L., Jun 1 2017, In : Data in Brief. 12, p. 346-350 5 p.

Research output: Contribution to journalArticle

Falx cerebri segmentation via multi-atlas boundary fusion

Glaister, J., Carass, A., Pham, D., Butman, J. A. & Prince, J. L., Jan 1 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M., Duchesne, S., Franz, A., Jannin, P., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 92-99 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Incompressible phase registration for motion estimation from tagged magnetic resonance images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., 2017, Reconstruction, Segmentation, and Analysis of Medical Images - 1st International Workshops, RAMBO 2016 and HVSMR 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Zuluaga, M. A., Moghari, M. H., Pace, D. F., Kainz, B. & Bhatia, K. (eds.). Springer Verlag, p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10129 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Towards topological correct segmentation of macular OCT from cascaded FCNs

He, Y., Carass, A., Yun, Y., Zhao, C., Jedynak, B. M., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., 2017, Fetal, Infant and Ophthalmic Medical Image Analysis - International Workshop, FIFI 2017 and 4th International Workshop, OMIA 2017 Held in Conjunction with MICCAI 2017, Proceedings. Cardoso, M. J. & Arbel, T. (eds.). Springer Verlag, p. 202-209 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10554 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2020

Five-year longitudinal changes in quantitative spinal cord MRI in multiple sclerosis

Oh, J., Chen, M., Cybulsky, K., Suthiphosuwan, S., Seyman, E., Dewey, B., Diener-West, M., van Zijl, P., Prince, J., Reich, D. S. & Calabresi, P. A., 2020, (Accepted/In press) In : Multiple Sclerosis Journal.

Research output: Contribution to journalArticle

2016

Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors

Glaister, J., Carass, A., Stough, J. V., Calabresi, P. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97843J

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT

Reaungamornrat, S., Carass, A., He, Y., Saidha, S., Calabresi, P. A. & Prince, J. L., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 105741B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10574).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2020

Association of body mass index with longitudinal rates of retinal atrophy in multiple sclerosis

Filippatou, A. G., Lambe, J., Sotirchos, E. S., Fitzgerald, K. C., Aston, A., Murphy, O. C., Pellegrini, N., Fioravante, N., Risher, H., Ogbuokiri, E., Kwakyi, O., Toliver, B., Davis, S., Luciano, N., Crainiceanu, C., Prince, J. L., Mowry, E. M., Calabresi, P. A. & Saidha, S., Jun 1 2020, In : Multiple Sclerosis Journal. 26, 7, p. 843-854 12 p.

Research output: Contribution to journalArticle

2016

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S. D., Calabresi, P. A. & Prince, J. L., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, p. 197-200 4 p. 7493243. (Proceedings - International Symposium on Biomedical Imaging; vol. 2016-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging

Bilgel, M., Prince, J. L., Wong, D. F., Resnick, S. M. & Jedynak, B. M., Jul 1 2016, In : NeuroImage. 134, p. 658-670 13 p.

Research output: Contribution to journalArticle

Surgical fiducial segmentation and tracking for pose estimation based on ultrasound B-mode images

Chen, L., Kuo, N., Aalamifar, F., Narrow, D., O'Brien-Coon, D., Prince, J. L. & Boctor, E., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 1244-1247 4 p. 7590931

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium

Lu, Y. C., Daphalapurkar, N. P., Knutsen, A. K., Glaister, J., Pham, D. L., Butman, J. A., Prince, J. L., Bayly, P. V. & Ramesh, K. T., Sep 15 2019, In : Annals of biomedical engineering. 47, 9, p. 1923-1940 18 p.

Research output: Contribution to journalArticle

2017

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning

Lee, J., Carass, A., Jog, A., Zhao, C. & Prince, J. L., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331I

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients

Lang, A., Carass, A., Bittner, A. K., Ying, H. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, 101371M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10137).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation

Zuo, L., Carass, A., Han, S. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 10578. 105780D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Parallel deep neural networks for endoscopic oct image segmentation

Li, D., Wu, J., He, Y., Yao, X., Yuan, W., Chen, D., Park, H. C., Yu, S., Prince, J. L. & Li, X., Mar 1 2019, In : Biomedical Optics Express. 10, 3, p. 1126-1135 10 p., #349139.

Research output: Contribution to journalArticle

2018

Cross-modality image synthesis from unpaired data using cyclegan: Effects of gradient consistency loss and training data size

Hiasa, Y., Otake, Y., Takao, M., Matsuoka, T., Takashima, K., Carass, A., Prince, J. L., Sugano, N. & Sato, Y., 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 31-41 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model

Antony, B. J., Kim, B. J., Lang, A., Carass, A., Prince, J. L. & Zack, D. J., Aug 2017, In : PloS one. 12, 8, e0181059.

Research output: Contribution to journalArticle

2016

Combined registration and motion correction of longitudinal retinal OCT data

Lang, A., Carass, A., Al-Louzi, O., Bhargava, P., Solomon, S. D., Calabresi, P. A. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. Styner, M. A., Angelini, E. D. & Angelini, E. D. (eds.). SPIE, 97840X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9784).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2020

Retinal pathology occurs in stiff-person syndrome

Lambe, J., Rothman, A., Prince, J., Saidha, S., Calabresi, P. A. & Newsome, S. D., May 19 2020, In : Neurology. 94, 20, p. e2126-e2131

Research output: Contribution to journalArticle

2018

2D Modeling and Correction of Fan-Beam Scan Geometry in OCT

Chen, M., Gee, J. C., Prince, J. L. & Aguirre, G. K., Jan 1 2018, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Bogunovic, H., Snead, D., Garvin, M. K., Chen, X. J., Ciompi, F., Xu, Y., Maier-Hein, L., Veta, M., Trucco, E., Stoyanov, D., Rajpoot, N., van der Laak, J., Martel, A. & McKenna, S. (eds.). Springer Verlag, p. 328-335 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11039 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L., 2016, Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none. p. 87-96 10 p. (Mathematics and Visualization; vol. none).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Realistic analytical polyhedral MRI phantoms

Ngo, T. M., Fung, G. S. K., Han, S., Chen, M., Prince, J. L., Tsui, B. M. W., McVeigh, E. R. & Herzka, D. A., Aug 1 2016, In : Magnetic resonance in medicine. 76, 2, p. 663-678 16 p.

Research output: Contribution to journalArticle

2017

Whole brain parcellation with pathology: Validation on ventriculomegaly patients

Carass, A., Shao, M., Li, X., Dewey, B. E., Blitz, A. M., Roy, S., Pham, D., Prince, J. L. & Ellingsen, L. M., 2017, Patch-Based Techniques in Medical Imaging - 3rd International Workshop, Patch-MI 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10530 LNCS. p. 20-28 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10530 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation

Ye, C. & Prince, J. L., Dec 1 2016, In : Computerized Medical Imaging and Graphics. 54, p. 35-47 13 p.

Research output: Contribution to journalArticle