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  • 2020
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  • Jerry Ladd Prince
2016

A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation

Ye, C. & Prince, J. L., Dec 1 2016, In : Computerized Medical Imaging and Graphics. 54, p. 35-47 13 p.

Research output: Contribution to journalArticle

2019

Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images

Woo, J., Xing, F., Stone, M., Green, J., Reese, T. G., Brady, T. J., Wedeen, V. J., Prince, J. L. & El Fakhri, G., Jul 4 2019, In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. 7, 4, p. 361-373 13 p.

Research output: Contribution to journalArticle

2016

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L., 2016, Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none. p. 87-96 10 p. (Mathematics and Visualization; vol. none).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J., 2017, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138. 1013813

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Segmentation of thalamus from MR images via task-driven dictionary learning

Liu, L., Glaister, J., Sun, X., Carass, A., Tran, T. D. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97843H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Self super-resolution for magnetic resonance images

Jog, A., Carass, A. & Prince, J. L., 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9902 LNCS. p. 553-560 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9902 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Inverse biomechanical modeling of the tongue via machine learning and synthetic training data

Tolpadi, A. A., Stone, M. L., Carass, A., Prince, J. L. & Gomez, A., Jan 1 2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). SPIE, Vol. 10576. 1057606

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Strain map of the tongue in normal and ALS speech patterns from tagged and diffusion MRI

Xing, F., Prince, J. L., Stone, M., Reese, T. G., Atassi, N., Wedeen, V. J., El Fakhri, G. & Woo, J., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057411

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Hierarchical Parcellation of the Cerebellum

Han, S., Carass, A. & Prince, J. L., Jan 1 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 484-491 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11766 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles

Li, K., Ye, C., Yang, Z., Carass, A., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97841H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Deformable model reconstruction of the subarachnoid space

Glaister, J., Shao, M., Li, X., Carass, A., Roy, S., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 1057431

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Whole brain parcellation with pathology: Validation on ventriculomegaly patients

Carass, A., Shao, M., Li, X., Dewey, B. E., Blitz, A. M., Roy, S., Pham, D., Prince, J. L. & Ellingsen, L. M., 2017, Patch-Based Techniques in Medical Imaging - 3rd International Workshop, Patch-MI 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10530 LNCS. p. 20-28 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10530 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas

Shao, M., Carass, A., Li, X., Dewey, B. E., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10578. 105780F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Surgical fiducial segmentation and tracking for pose estimation based on ultrasound B-mode images

Chen, L., Kuo, N., Aalamifar, F., Narrow, D., O'Brien-Coon, D., Prince, J. L. & Boctor, E., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 1244-1247 4 p. 7590931

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Cross-modality image synthesis from unpaired data using cyclegan: Effects of gradient consistency loss and training data size

Hiasa, Y., Otake, Y., Takao, M., Matsuoka, T., Takashima, K., Carass, A., Prince, J. L., Sugano, N. & Sato, Y., 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 31-41 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Layer boundary evolution method for macular OCT layer segmentation

Liu, Y., Carass, A., He, Y., Antony, B. J., Filippatou, A., Saidha, S., Solomon, S., Calabresi, P. & Prince, J. L., Mar 1 2019, In : Biomedical Optics Express. 10, 3, p. 1064-1080 17 p., 349227.

Research output: Contribution to journalArticle

Image synthesis and superresolution in medical imaging

Prince, J. L., Carass, A., Zhao, C., Dewey, B. E., Roy, S. & Pham, D., Jan 1 2019, Handbook of Medical Image Computing and Computer Assisted Intervention. Elsevier, p. 1-24 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Self super-resolution for magnetic resonance images using deep networks

Zhao, C., Carass, A., Dewey, B. E. & Prince, J. L., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 365-368 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT

He, Y., Carass, A., Liu, Y., Jedynak, B. M., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., Oct 1 2019, In : Biomedical Optics Express. 10, 10, p. 5042-5058 17 p.

Research output: Contribution to journalArticle

2018

Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans

Gonzalez Caldito, N., Antony, B., He, Y., Lang, A., Nguyen, J., Rothman, A., Ogbuokiri, E., Avornu, A., Balcer, L., Frohman, E., Frohman, T. C., Bhargava, P., Prince, J., Calabresi, P. A. & Saidha, S., Mar 4 2018, In : Current Eye Research. 43, 3, p. 415-423 9 p.

Research output: Contribution to journalArticle

2017

Motion estimation with finite-element biomechanical models and tracking constraints from tagged MRI

Gomez, A. D., Xing, F., Chan, D., Pham, D. L., Bayly, P. & Prince, J. L., Apr 29 2017, Computational Biomechanics for Medicine: From Algorithms to Models and Applications. Springer International Publishing, p. 81-90 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Atlas of acceleration-induced brain deformation from measurements in vivo

Gomez, A. D., Knutsen, A., Chan, D., Lu, Y. C., Pham, D. L., Bayly, P. & Prince, J. L., May 14 2018, Computational Biomechanics for Medicine: Measurements, Models, and Predictions. Springer International Publishing, p. 3-14 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT

Reaungamornrat, S., Carass, A., He, Y., Saidha, S., Calabresi, P. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741B

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A deep learning based anti-aliasing self super-resolution algorithm for MRI

Zhao, C., Carass, A., Dewey, B. E., Woo, J., Oh, J., Calabresi, P. A., Reich, D. S., Sati, P., Pham, D. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Schnabel, J. A., Davatzikos, C., Alberola-López, C., Fichtinger, G. & Frangi, A. F. (eds.). Springer Verlag, p. 100-108 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization

Yang, Z., Abulnaga, S. M., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Automatic quality control using hierarchical shape analysis for cerebellum parcellation

Zuo, L., Han, S., Carass, A., Ying, S. H., Onyike, C. U. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109490J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction

Abulnaga, S. M., Yang, Z., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Computer-Aided Diagnosis. SPIE, Vol. 9785. 97852P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)

Pereira, L., Airan, R. D., Fishman, A., Pillai, J. J., Kansal, K., Onyike, C. U., Prince, J. L., Ying, S. H. & Sair, H. I., Jun 2017, In : Human Brain Mapping. 38, 6, p. 3001-3010 10 p.

Research output: Contribution to journalArticle

2019

Atlas-based tongue muscle correlation analysis from tagged and high- resolution magnetic resonance imaging

Xing, F., Stone, M., Goldsmith, T., Prince, J. L., Fakhri, G. E. & Woo, J., Jul 2019, In : Journal of Speech, Language, and Hearing Research. 62, 7, p. 2258-2269 12 p.

Research output: Contribution to journalArticle

2020

Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures

Murphy, O. C., Kwakyi, O., Iftikhar, M., Zafar, S., Lambe, J., Pellegrini, N., Sotirchos, E. S., Gonzalez-Caldito, N., Ogbuokiri, E., Filippatou, A., Risher, H., Cowley, N., Feldman, S., Fioravante, N., Frohman, E. M., Frohman, T. C., Balcer, L. J., Prince, J. L., Channa, R., Calabresi, P. A. & 1 others, Saidha, S., Jun 1 2020, In : Multiple Sclerosis Journal. 26, 7, p. 815-828 14 p.

Research output: Contribution to journalArticle

Association of body mass index with longitudinal rates of retinal atrophy in multiple sclerosis

Filippatou, A. G., Lambe, J., Sotirchos, E. S., Fitzgerald, K. C., Aston, A., Murphy, O. C., Pellegrini, N., Fioravante, N., Risher, H., Ogbuokiri, E., Kwakyi, O., Toliver, B., Davis, S., Luciano, N., Crainiceanu, C., Prince, J. L., Mowry, E. M., Calabresi, P. A. & Saidha, S., Jun 1 2020, In : Multiple Sclerosis Journal. 26, 7, p. 843-854 12 p.

Research output: Contribution to journalArticle

Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis

Sotirchos, E. S., Gonzalez-Caldito, N., Dewey, B. E., Fitzgerald, K. C., Glaister, J., Filippatou, A., Ogbuokiri, E., Feldman, S., Kwakyi, O., Risher, H., Crainiceanu, C., Pham, D. L., Van Zijl, P. C., Mowry, E. M., Reich, D. S., Prince, J. L., Calabresi, P. A. & Saidha, S., Mar 1 2020, In : Multiple Sclerosis Journal. 26, 3, p. 312-321 10 p.

Research output: Contribution to journalArticle

2017

Cross contrast multi-channel image registration using image synthesis for MR brain images

Chen, M., Carass, A., Jog, A., Lee, J., Roy, S. & Prince, J. L., Feb 1 2017, In : Medical Image Analysis. 36, p. 2-14 13 p.

Research output: Contribution to journalArticle

2019

Spinal cord and infratentorial lesions in radiologically isolated syndrome are associated with decreased retinal ganglion cell/inner plexiform layer thickness

Filippatou, A., Shoemaker, T., Esch, M., Qutab, M., Gonzalez-Caldito, N., Prince, J. L., Mowry, E. M., Calabresi, P. A., Saidha, S. & Sotirchos, E. S., Dec 1 2019, In : Multiple Sclerosis Journal. 25, 14, p. 1878-1887 10 p.

Research output: Contribution to journalArticle

2016

Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation

Roy, S., Carass, A., Pacheco, J., Bilgel, M., Resnick, S. M., Prince, J. L. & Pham, D. L., Jan 1 2016, In : NeuroImage: Clinical. 11, p. 264-275 12 p.

Research output: Contribution to journalArticle

2020

Five-year longitudinal changes in quantitative spinal cord MRI in multiple sclerosis

Oh, J., Chen, M., Cybulsky, K., Suthiphosuwan, S., Seyman, E., Dewey, B., Diener-West, M., van Zijl, P., Prince, J., Reich, D. S. & Calabresi, P. A., 2020, (Accepted/In press) In : Multiple Sclerosis Journal.

Research output: Contribution to journalArticle

2019

Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning

Woo, J., Xing, F., Prince, J. L., Stone, M., Green, J. R., Goldsmith, T., Reese, T. G., Wedeen, V. J. & El Fakhri, G., May 1 2019, In : Journal of the Acoustical Society of America. 145, 5, p. EL423-EL429

Research output: Contribution to journalArticle

Open Access
2016

Individual estimates of age at detectable amyloid onset for risk factor assessment

Bilgel, M., An, Y., Zhou, Y., Wong, D. F., Prince, J. L., Ferrucci, L. & Resnick, S. M., 2016, (Accepted/In press) In : Alzheimer's and Dementia.

Research output: Contribution to journalArticle

2017

Phase Vector Incompressible Registration Algorithm for Motion Estimation from Tagged Magnetic Resonance Images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., Oct 2017, In : IEEE transactions on medical imaging. 36, 10, p. 2116-2128 13 p., 7967856.

Research output: Contribution to journalArticle

2018

State-of-the-Art Digital Imaging in Dentistry: Advanced Research of MRI, CT, CBCT, and Digital Intraoral Imaging

Honda, E., Prince, J. L. & Fontanella, V. R. C., Jan 1 2018, In : BioMed Research International. 2018, 9057120.

Research output: Contribution to journalEditorial

2016

Consistent cortical reconstruction and multi-atlas brain segmentation

Huo, Y., Plassard, A. J., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A., Sep 1 2016, In : NeuroImage. 138, p. 197-210 14 p.

Research output: Contribution to journalArticle

2017

Structural cerebellar correlates of cognitive and motor dysfunctions in cerebellar degeneration

Kansal, K., Yang, Z., Fishman, A. M., Sair, H., Ying, S. H., Jedynak, B. M., Prince, J. L. & Onyike, C. U., Mar 1 2017, In : Brain : a journal of neurology. 140, 3, p. 707-720 14 p.

Research output: Contribution to journalArticle

2020

Automatic cerebellum anatomical parcellation using U-Net with locally constrained optimization

Han, S., Carass, A., He, Y. & Prince, J. L., Sep 2020, In : NeuroImage. 218, 116819.

Research output: Contribution to journalArticle

Open Access
2019
2016

Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling

Ellingsen, L. M., Roy, S., Carass, A., Blitz, A. M., Pham, D. L. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Quantifying tensor field similarity with global distributions and optimal transport

Gomez, A. D., Stone, M. L., Bayly, P. V. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Fichtinger, G., Davatzikos, C., Alberola-López, C., Frangi, A. F. & Schnabel, J. A. (eds.). Springer Verlag, p. 428-436 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11071 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2020

Analysis of fiber strain in the human tongue during speech

Gomez, A. D., Stone, M. L., Woo, J., Xing, F. & Prince, J. L., Jun 10 2020, In : Computer Methods in Biomechanics and Biomedical Engineering. 23, 8, p. 312-322 11 p.

Research output: Contribution to journalArticle

2017

Simulation and synthesis in medical imaging: Second international workshop, SASHIMI 2017 held in conjunction with MICCAI 2017 Québec city, QC, Canada, September 10, 2017 proceedings

Tsaftaris, S. A., Gooya, A., Frangi, A. F. & Prince, J. L., Jan 1 2017, Simulation and Synthesis in Medical Imaging - 2nd International Workshop, SASHIMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Gooya, A., Frangi, A. F., Tsaftaris, S. A. & Prince, J. L. (eds.). Springer Verlag, (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10557 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Test suite for image-based motion estimation of the brain and tongue

Ramsey, J., Prince, J. L. & Gomez, A., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Improving cerebellar segmentation with statistical fusion

Plassard, A. J., Yang, Z., Prince, J. L., Claassen, D. O. & Landman, B. A., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97842R

Research output: Chapter in Book/Report/Conference proceedingConference contribution