Stuart Campbell Ray

Professor

1990 …2020

Research output per year

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Research Output

2020

Correlates of hepatitis C viral clustering among people who inject drugs in Baltimore

Hackman, J., Falade-Nwulia, O., Patel, E. U., Mehta, S. H., Kirk, G. D., Astemborski, J., Ray, S. C., Thomas, D. L. & Laeyendecker, O., Jan 2020, In : Infection, Genetics and Evolution. 77, 104078.

Research output: Contribution to journalArticle

Open Access

Generative optical modeling of whole blood for detecting platelets in lens-free images

Haeffele, B. D., Pick, C., Lin, Z., Mathieu, E., Ray, S. C. & Vidal, R., Apr 1 2020, In : Biomedical Optics Express. 11, 4, p. 1808-1818 11 p.

Research output: Contribution to journalArticle

2019

An optical model of whole blood for detecting platelets in lens-free images

Haeffele, B. D., Pick, C., Lin, Z., Mathieu, E., Ray, S. C. & Vidal, R., Jan 1 2019, Simulation and Synthesis in Medical Imaging - 4th International Workshop, SASHIMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Burgos, N., Gooya, A. & Svoboda, D. (eds.). Springer, p. 140-150 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11827 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diversity of hepatitis C virus infection among HIV-infected people who inject drugs in India

Solomon, S. S., Boon, D., Saravanan, S., Srikrishnan, A. K., Vasudevan, C. K., Balakrishnan, P., Persaud, D., Ray, S. C., Mehta, S. & Mehta, S. H., Dec 1 2019, In : VirusDisease. 30, 4, p. 490-497 8 p.

Research output: Contribution to journalArticle

Inconsistent temporal patterns of genetic variation of HCV among high-risk subjects may impact inference of transmission networks

Rose, R., Rodriguez, C., Dollar, J. J., Lamers, S. L., Massaccesi, G., Osburn, W., Ray, S. C., Thomas, D. L., Cox, A. L. & Laeyendecker, O., Jul 2019, In : Infection, Genetics and Evolution. 71, p. 1-6 6 p.

Research output: Contribution to journalArticle

Joint Holographic Detection and Reconstruction

Yellin, F., Béjar, B., Haeffele, B. D., Mathieu, E., Pick, C., Ray, S. C. & Vidal, R., Jan 1 2019, Machine Learning in Medical Imaging - 10th International Workshop, MLMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Suk, H-I., Liu, M., Lian, C. & Yan, P. (eds.). Springer, p. 664-672 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11861 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Plasma deconvolution identifies broadly neutralizing antibodies associated with hepatitis C virus clearance

Kinchen, V. J., Massaccesi, G., Flyak, A. I., Mankowski, M. C., Colbert, M. D., Osburn, W. O., Ray, S. C., Cox, A. L., Crowe, J. E. & Bailey, J. R., Aug 13 2019, In : The Journal of clinical investigation. 130

Research output: Contribution to journalArticle

Open Access

Users beware! Biological variation in complete blood counts over short time intervals

Deluca, A., Betz, J., Bollinger, R., Ray, S. & Manabe, Y., Dec 1 2019, In : BMJ Evidence-Based Medicine. 24, 6, p. 207-208 2 p.

Research output: Contribution to journalComment/debate

2018

Broadly Neutralizing Antibody Mediated Clearance of Human Hepatitis C Virus Infection

Kinchen, V. J., Zahid, M. N., Flyak, A. I., Soliman, M. G., Learn, G. H., Wang, S., Davidson, E., Doranz, B. J., Ray, S. C., Cox, A. L., Crowe, J. E., Bjorkman, P. J., Shaw, G. M. & Bailey, J. R., Nov 14 2018, In : Cell Host and Microbe. 24, 5, p. 717-730.e5

Research output: Contribution to journalArticle

CMPK2 and BCL-G are associated with type 1 interferon–induced HIV restriction in humans

El-Diwany, R., Soliman, M., Sugawara, S., Breitwieser, F., Skaist, A., Coggiano, C., Sangal, N., Chattergoon, M., Bailey, J. R., Siliciano, R. F., Blankson, J. N., Ray, S. C., Wheelan, S. J., Thomas, D. L. & Balagopal, A., Aug 1 2018, In : Science Advances. 4, 8, eaat0843.

Research output: Contribution to journalArticle

Complex patterns of Hepatitis-C virus longitudinal clustering in a high-risk population

Rose, R., Lamers, S. L., Massaccesi, G., Osburn, W., Ray, S. C., Thomas, D. L., Cox, A. & Laeyendecker, O. B., Mar 1 2018, In : Infection, Genetics and Evolution. 58, p. 77-82 6 p.

Research output: Contribution to journalArticle

Expanded cellular clones carrying replication-competent HIV-1 persist, wax, and wane

Wang, Z., Gurule, E. E., Brennan, T. P., Gerold, J. M., Kwon, K. J., Hosmane, N. N., Kumar, M. R., Beg, S. A., Capoferri, A. A., Ray, S. C., Ho, Y-C., Hill, A. L., Siliciano, J. D. & Siliciano, R. F., Jan 1 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 11, p. E2575-E2584

Research output: Contribution to journalArticle

Rapid and sensitive detection of viral nucleic acids using silicon microchips

Powell, L., Wiederkehr, R. S., Damascus, P., Fauvart, M., Buja, F., Stakenborg, T., Ray, S. C., Fiorini, P. & Osburn, W. O., Jun 7 2018, In : Analyst. 143, 11, p. 2596-2603 8 p.

Research output: Contribution to journalArticle

Synergistic anti-HCV broadly neutralizing human monoclonal antibodies with independent mechanisms

Mankowski, M. C., Kinchen, V. J., Wasilewski, L. N., Flyak, A. I., Ray, S. C., Crowe, J. E. & Bailey, J. R., Jan 2 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 1, p. E82-E91

Research output: Contribution to journalArticle

2017

Broadly neutralizing antibodies with few somatic mutations and hepatitis C virus clearance

Bailey, J. R., Flyak, A. I., Cohen, V. J., Li, H., Wasilewski, L. N., Snider, A. E., Wang, S., Learn, G. H., Kose, N., Loerinc, L., Lampley, R., Cox, A. L., Pfaff, J. M., Doranz, B. J., Shaw, G. M., Ray, S. C. & Crowe, J. E., May 4 2017, In : JCI Insight. 2, 9

Research output: Contribution to journalArticle

Open Access

Extra-epitopic hepatitis C virus polymorphisms confer resistance to broadly neutralizing antibodies by modulating binding to scavenger receptor B1

El-Diwany, R., Cohen, V. J., Mankowski, M. C., Wasilewski, L. N., Brady, J. K., Snider, A. E., Osburn, W. O., Murrell, B., Ray, S. C. & Bailey, J. R., Feb 2017, In : PLoS pathogens. 13, 2, e1006235.

Research output: Contribution to journalArticle

Intracellular HIV-1 RNA and CD4+ T-cell activation in patients starting antiretrovirals

El-Diwany, R., Breitwieser, F. P., Soliman, M., Skaist, A. M., Srikrishna, G., Blankson, J. N., Ray, S. C., Wheelan, S. J., Thomas, D. L. & Balagopal, A., Jun 19 2017, In : AIDS. 31, 10, p. 1405-1414 10 p.

Research output: Contribution to journalArticle

It's 10 pm; do you know where your data are? Data provenance, curation, and storage

Anderson, M. E. & Ray, S. C., May 12 2017, In : Circulation research. 120, 10, p. 1551-1554 4 p.

Research output: Contribution to journalComment/debate

New therapies for treating hepatitis C virus: Impact on laboratory testing recommendations and clinical management

Tolan, N. V., Horowitz, G. L., Graham, C. S., Hillyard, D., Osburn, W. & Ray, S. C., Dec 1 2017, In : Clinical Chemistry. 63, 12, p. 1799-1805 7 p.

Research output: Contribution to journalComment/debate

2016

A hepatitis C virus envelope polymorphism confers resistance to neutralization by polyclonal sera and broadly neutralizing monoclonal antibodies

Wasilewski, L. N., El-Diwany, R., Munshaw, S., Snider, A. E., Brady, J. K., Osburn, W. O., Ray, S. C. & Bailey, J. R., Jan 1 2016, In : Journal of virology. 90, 7, p. 3773-3782 10 p.

Research output: Contribution to journalArticle

Hepatitis C virus resistance to broadly neutralizing antibodies measured using replication-competent virus and pseudoparticles

Wasilewski, L. N., Ray, S. C. & Bailey, J. R., Nov 2016, In : Journal of General Virology. 97, 11, p. 2883-2893 11 p., 000608.

Research output: Contribution to journalArticle

2015

Genome sequencing and analysis of geographically diverse clinical isolates of herpes simplex virus 2

Newman, R. M., Lamers, S. L., Weiner, B., Ray, S. C., Colgrove, R. C., Diaz, F., Jing, L., Wang, K., Saif, S., Young, S., Henn, M., Laeyendecker, O., Tobian, A. A. R., Cohen, J. I., Koelle, D. M., Quinn, T. C. & Knipe, D. M., 2015, In : Journal of virology. 89, 16, p. 8219-8232 14 p.

Research output: Contribution to journalArticle

Global diversity within and between human herpesvirus 1 and 2 glycoproteins

Lamers, S. L., Newman, R. M., Laeyendecker, O., Tobian, A. A. R., Colgrove, R. C., Ray, S. C., Koelle, D. M., Cohen, J., Knipe, D. M. & Quinn, T. C., 2015, In : Journal of virology. 89, 16, p. 8206-8218 13 p.

Research output: Contribution to journalArticle

Interferon-free treatment of chronic hepatitis C with faldaprevir, deleobuvir and ribavirin: SOUND-C3, a Phase 2b study

Zeuzem, S., Dufour, J. F., Buti, M., Soriano, V., Buynak, R. J., Mantry, P., Taunk, J., Stern, J. O., Vinisko, R., Gallivan, J. P., Böcher, W., Mensa, F. J., Cobert, B., Gonzalwz-Peralta, R., Ray, S. C. & Talal, A., Feb 1 2015, In : Liver International. 35, 2, p. 417-421 5 p.

Research output: Contribution to journalArticle

Naturally selected hepatitis C virus polymorphisms confer broad neutralizing antibody resistance

Bailey, J. R., Wasilewski, L. N., Snider, A. E., El-Diwany, R., Osburn, W. O., Keck, Z., Foung, S. K. H. & Ray, S. C., Jan 2 2015, In : Journal of Clinical Investigation. 125, 1, p. 437-447 11 p.

Research output: Contribution to journalArticle

2014

Accelerating drug development through collaboration: The Hepatitis C drug development advisory group

Hutchison, C., Kwong, A., Ray, S., Struble, K., Swan, T. & Miller, V., Jan 1 2014, In : Clinical pharmacology and therapeutics. 96, 2, p. 162-165 4 p.

Research output: Contribution to journalArticle

Clearance of hepatitis C infection is associated with the early appearance of broad neutralizing antibody responses

Osburn, W. O., Snider, A. E., Wells, B. L., Latanich, R., Bailey, J. R., Thomas, D. L., Cox, A. L. & Ray, S. C., Jun 2014, In : Hepatology. 59, 6, p. 2140-2151 12 p.

Research output: Contribution to journalArticle

Hepatitis C

Ray, S. C. & Thomas, D. L., Aug 28 2014, Mandell, Douglas, and Bennett's Principles and Practice of Infectious Diseases. Elsevier Inc., Vol. 2. p. 1904-1927.e9

Research output: Chapter in Book/Report/Conference proceedingChapter

The Role of Viral Introductions in Sustaining Community-Based HIV Epidemics in Rural Uganda: Evidence from Spatial Clustering, Phylogenetics, and Egocentric Transmission Models

Grabowski, M. K., Lessler, J., Redd, A. D., Kagaayi, J., Laeyendecker, O., Ndyanabo, A., Nelson, M. I., Cummings, D. A. T., Bwanika, J. B., Mueller, A. C., Reynolds, S. J., Munshaw, S., Ray, S. C., Lutalo, T., Manucci, J., Tobian, A. A. R., Chang, L. W., Beyrer, C., Jennings, J. M., Nalugoda, F. & 4 others, Serwadda, D., Wawer, M. J., Quinn, T. C. & Gray, R. H., Mar 2014, In : PLoS medicine. 11, 3, e1001610.

Research output: Contribution to journalArticle

2013

Hepatitis C virus

Ray, S. C., Bailey, J. & Thomas, D. L., May 21 2013, Fields Virology: Sixth Edition. Wolters Kluwer Health Adis (ESP), Vol. 1.

Research output: Chapter in Book/Report/Conference proceedingChapter

Use of laser capture microdissection to map hepatitis C virus-positive hepatocytes in human liver

Kandathil, A. J., Graw, F., Quinn, J., Hwang, H. S., Torbenson, M., Perelson, A. S., Ray, S. C., Thomas, D. L., Ribeiro, R. M. & Balagopal, A., Dec 2013, In : Gastroenterology. 145, 6, p. 1404-1413.e10

Research output: Contribution to journalArticle

2012

Computational reconstruction of bole1a, a representative synthetic hepatitis C virus subtype 1a genome

Munshaw, S., Bailey, J. R., Liu, L., Osburn, W. O., Burke, K. P., Cox, A. L. & Ray, S. C., May 1 2012, In : Journal of virology. 86, 10, p. 5915-5921 7 p.

Research output: Contribution to journalArticle

Constraints on viral evolution during chronic hepatitis C virus infection arising from a common-source exposure

Bailey, J. R., Laskey, S., Wasilewski, L. N., Munshaw, S., Fanning, L. J., Kenny-Walsh, E. & Ray, S. C., Dec 1 2012, In : Journal of virology. 86, 23, p. 12582-12590 9 p.

Research output: Contribution to journalArticle

Hepatitis C virus epitope exposure and neutralization by antibodies is affected by time and temperature

Sabo, M. C., Luca, V. C., Ray, S. C., Bukh, J., Fremont, D. H. & Diamond, M. S., Jan 20 2012, In : Virology. 422, 2, p. 174-184 11 p.

Research output: Contribution to journalArticle

Immunogenicity and cross-reactivity of a representative ancestral sequence in hepatitis C virus infection

Burke, K. P., Munshaw, S., Osburn, W. O., Levine, J., Liu, L., Sidney, J., Sette, A., Ray, S. C. & Cox, A. L., May 15 2012, In : Journal of Immunology. 188, 10, p. 5177-5188 12 p.

Research output: Contribution to journalArticle

Laser captured hepatocytes show association of butyrylcholinesterase gene loss and fibrosis progression in hepatitis C-infected drug users

Munshaw, S., Hwang, H. S., Torbenson, M., Quinn, J., Hansen, K. D., Astemborski, J., Mehta, S. H., Ray, S. C., Thomas, D. L. & Balagopal, A., Aug 1 2012, In : Hepatology. 56, 2, p. 544-554 11 p.

Research output: Contribution to journalArticle

Spontaneous clearance of primary acute hepatitis C virus infection correlated with high initial viral RNA level and rapid HVR1 evolution

Liu, L., Fisher, B. E., Thomas, D. L., Cox, A. L. & Ray, S. C., Jun 1 2012, In : Hepatology. 55, 6, p. 1684-1691 8 p.

Research output: Contribution to journalArticle

2011

Analysis of genetic linkage of HIV from couples enrolled in the HIV prevention trials network 052 trial

Eshleman, S. H., Hudelson, S. E., Redd, A. D., Wang, L., Debes, R., Chen, Y. Q., Martens, C. A., Ricklefs, S. M., Selig, E. J., Porcella, S. F., Munshaw, S., Ray, S. C., Piwowar-Manning, E., McCauley, M., Hosseinipour, M. C., Kumwenda, J., Hakim, J. G., Chariyalertsak, S., De Bruyn, G., Grinsztejn, B. & 8 others, Kumarasamy, N., Makhema, J., Mayer, K. H., Pilotto, J., Santos, B. R., Quinn, T. C., Cohen, M. S. & Hughes, J. P., Dec 15 2011, In : Journal of Infectious Diseases. 204, 12, p. 1918-1926 9 p.

Research output: Contribution to journalArticle

Molecular epidemiology of HIV type 1 in Singapore and identification of novel CRF01-AE/B recombinant forms

Ng, O. T., Munshaw, S., Lamers, S. L., Chew, K. K., Lin, L., Redd, A. D., Manucci, J., Quinn, T. C., Ray, S. C., Chua, A., Leo, Y. S. & Laeyendecker, O., Oct 1 2011, In : AIDS research and human retroviruses. 27, 10, p. 1135-1137 3 p.

Research output: Contribution to journalReview article

The transhepatic endotoxin gradient is present despite liver cirrhosis and is attenuated after transjugular portosystemic shunt (TIPS)

Benten, D., Wiesch, J. S. Z., Sydow, K., Koops, A., Buggisch, P., Böger, R. H., Gaydos, C. A., Won, H., Franco, V., Lohse, A. W., Ray, S. C. & Balagopal, A., Oct 6 2011, In : BMC Gastroenterology. 11, 107.

Research output: Contribution to journalArticle

2010

Acceleration of hepatitis C virus envelope evolution in humans is consistent with progressive humoral immune selection during the transition from acute to chronic infection

Liu, L., Fisher, B. E., Dowd, K. A., Astemborski, J., Cox, A. L. & Ray, S. C., May 2010, In : Journal of virology. 84, 10, p. 5067-5077 11 p.

Research output: Contribution to journalArticle

Analysis of HIV diversity using a high-resolution melting assay

Towler, W. I., James, M. M., Ray, S. C., Wang, L., Donnell, D., Mwatha, A., Guay, L., Nakabiito, C., Musoke, P., Jackson, J. B. & Eshleman, S., Aug 1 2010, In : AIDS research and human retroviruses. 26, 8, p. 913-918 6 p.

Research output: Contribution to journalArticle

Control of HIV-1 in elite suppressors despite ongoing replication and evolution in plasma virus

O'Connell, K. A., Brennan, T. P., Bailey, J. R., Ray, S. C., Siliciano, R. F. & Blankson, J. N., Jul 2010, In : Journal of virology. 84, 14, p. 7018-7028 11 p.

Research output: Contribution to journalArticle

Epidemiology of hepatitis C virus infection & liver disease among injection drug users (IDUS) in Chennai, India

Mehta, S. H., Vogt, S. L., Srikrishnan, A. K., Vasudevan, C. K., Murugavel, K. G., Saravanan, S., Anand, S., Suresh Kumar, M., Ray, S. C., Celentano, D. D., Solomon, S. & Solomon, S. S., Dec 1 2010, In : Indian Journal of Medical Research. 132, 12, p. 706-714 9 p.

Research output: Contribution to journalArticle

Evolution of the HIV-1 nef gene in HLA-B*57 Positive Elite Suppressors

Salgado, M., Brennan, T. P., O'Connell, K. A., Bailey, J. R., Ray, S. C., Siliciano, R. F. & Blankson, J. N., Nov 8 2010, In : Retrovirology. 7, 94.

Research output: Contribution to journalArticle