Steven L Salzberg

Professor

1983 …2020

Research output per year

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Research Output

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Comment/debate
2019
Open Access

Correction to: Assembly of a pan-genome from deep sequencing of 910 humans of African descent (Nature Genetics, (2019), 51, 1, (30-35), 10.1038/s41588-018-0273-y)

Sherman, R. M., Forman, J., Antonescu, V., Puiu, D., Daya, M., Rafaels, N., Boorgula, M. P., Chavan, S., Vergara, C., Ortega, V. E., Levin, A. M., Eng, C., Yazdanbakhsh, M., Wilson, J. G., Marrugo, J., Lange, L. A., Williams, L. K., Watson, H., Ware, L. B., Olopade, C. O. & 26 others, Olopade, O., Oliveira, R. R., Ober, C., Nicolae, D. L., Meyers, D. A., Mayorga, A., Knight-Madden, J., Hartert, T., Hansel, N. N., Foreman, M. G., Ford, J. G., Faruque, M. U., Dunston, G. M., Caraballo, L., Burchard, E. G., Bleecker, E. R., Araujo, M. I., Herrera-Paz, E. F., Campbell, M., Foster, C., Taub, M. A., Beaty, T. H., Ruczinski, I., Mathias, R. A., Barnes, K. C. & Salzberg, S. L., Feb 1 2019, In : Nature genetics. 51, 2, 1 p.

Research output: Contribution to journalComment/debate

2018

Open questions: How many genes do we have?

Salzberg, S. L., Aug 20 2018, In : BMC Biology. 16, 1, 94.

Research output: Contribution to journalComment/debate

2017

16GT: A fast and sensitive variant caller using a 16-genotype probabilistic model

Luo, R., Schatz, M. C. & Salzberg, S. L., Jul 1 2017, In : GigaScience. 6, 7, gix045.

Research output: Contribution to journalComment/debate

An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

Zimin, A. V., Stevens, K. A., Crepeau, M. W., Puiu, D., Wegrzyn, J. L., Yorke, J. A., Langley, C. H., Neale, D. B. & Salzberg, S. L., Jan 1 2017, In : GigaScience. 6, 1, giw016.

Research output: Contribution to journalComment/debate

Erratum: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. [Gigascience. (2017), 6(1), (1-4)]. doi: 10.1093/gigascience/giw016

Zimin, A. V., Stevens, K. A., Crepeau, M. W., Puiu, D., Wegrzyn, J. L., Yorke, J. A., Langley, C. H., Neale, D. B. & Salzberg, S. L., Jan 1 2017, In : GigaScience. 6, 10, gix072.

Research output: Contribution to journalComment/debate

2014

Erratum: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks (Nature Protocols (2012) 7 (562-578))

Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., Pimentel, H., Salzberg, S. L., Rinn, J. L. & Pachter, L., Jan 1 2014, In : Nature protocols. 9, 10, 1 p.

Research output: Contribution to journalComment/debate

2013

Sequestration: Inadvertently killing biomedical research to score political points

Leek, J. T. & Salzberg, S. L., Mar 27 2013, In : Genome biology. 14, 3, 109.

Research output: Contribution to journalComment/debate

Erratum: Uncensored exchange of scientific results (Proceedings of the National Academy of Sciences (2003) 100, 4, (1464) DOI: 10.1073/pnas.0630491100)

Atlas, R., Campbell, P., Cozzarelli, N. R., Curfman, G., Enquist, L., Fink, G., Flanagin, A., Fletcher, J., George, E., Hammes, G., Heyman, D., Inglesby, T., Kaplan, S., Kennedy, D., Krug, J., Levinson, R. E., Marcus, E., Metzger, H., Morse, S. S., O'Brien, A. & 12 others, Onderdonk, A., Poste, G., Renault, B., Rich, R., Rosengard, A., Salzberg, S., Scanlan, M., Shenk, T., Tabor, H., Varmus, H., Wimmer, E. & Yamamoto, K., May 22 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 21, 1 p.

Research output: Contribution to journalComment/debate

GAGE: A critical evaluation of genome assemblies and assembly algorithms (Genome Research (2012) 22 (557-567))

Salzberg, S. L., Phillippy, A. M., Zimin, A., Puiu, D., Magoc, T., Koren, S., Treangen, T. J., Schatz, M. C., Delcher, A. L., Roberts, M., Marçais, G., Pop, M. & Yorke, J. A., Jun 1 2012, In : Genome research. 22, 6, 1 p.

Research output: Contribution to journalComment/debate

2010

Between a chicken and a grape: estimating the number of human genes

Pertea, M. & Salzberg, S. L., Dec 1 2010, In : Genome biology. 11, SUPPL. 1, I1.

Research output: Contribution to journalComment/debate

Cloud computing and the DNA data race

Schatz, M. C., Langmead, B. & Salzberg, S. L., Jul 2010, In : Nature biotechnology. 28, 7, p. 691-693 3 p.

Research output: Contribution to journalComment/debate

2008

Erratum: Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A (BMC Genomics (2008) vol. 9 (204))

Salzberg, S. L., Sommer, D. D., Schatz, M. C., Phillippy, A. M., Rabinowicz, P. D., Tsuge, S., Furutani, A., Ochiai, H., Delcher, A. L., Kelley, D., Madupu, R., Puiu, D., Radune, D., Shumway, M., Trapnell, C., Aparna, G., Jha, G., Pandey, A., Patil, P. B., Ishihara, H. & 17 others, Meyer, D. F., Szurek, B., Verdier, V., Koebnik, R., Dow, J. M., Ryan, R. P., Hirata, H., Tsuyumu, S., Lee, S. W., Seo, Y. S., Sriariyanum, M., Ronald, P. C., Sonti, R. V., Van Sluys, M. A., Leach, J. E., White, F. F. & Bogdanove, A. J., Nov 11 2008, In : BMC genomics. 9, 534.

Research output: Contribution to journalComment/debate

The contents of the syringe

Salzberg, S., Jul 10 2008, In : Nature. 454, 7201, p. 160-161 2 p.

Research output: Contribution to journalComment/debate

2006

Erratum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus (Nature (2005) 438 (1151-1156))

Nierman, W. C., Pain, A., Anderson, M. J., Wortman, J. R., Kim, H. S., Arroyo, J., Berriman, M., Abe, K., Archer, D. B., Bermejo, C., Bennett, J., Bowyer, P., Chen, D., Collins, M., Coulsen, R., Davies, R., Dyer, P. S., Farman, M., Fedorova, N., Fedorova, N. & 78 others, Feldblyum, T. V., Fischer, R., Fosker, N., Fraser, A., García, J. L., García, M. J., Goble, A., Goldman, G. H., Gomi, K., Griffith-Jones, S., Gwilliam, R., Haas, B., Haas, H., Harris, D., Horiuchi, H., Huang, J., Humphray, S., Jiménez, J., Keller, N., Khouri, H., Kitamoto, K., Kobayashi, T., Konzack, S., Kulkarni, R., Kumagai, T., Lafon, A., Latgé, J. P., Li, W., Lord, A., Lu, C., Majoros, W. H., May, G. S., Miller, B. L., Mohamoud, Y., Molina, M., Monod, M., Mouyna, I., Mulligan, S., Murphy, L., O'Neil, S., Paulsen, I., Peñalva, M. A., Pertea, M., Price, C., Pritchard, B. L., Quail, M. A., Rabbinowitsch, E., Rawlins, N., Rajandream, M. A., Reichard, U., Renauld, H., Robson, G. D., De Córdoba, S. R., Rodríguez-Peña, J. M., Ronning, C. M., Rutter, S., Salzberg, S. L., Sanchez, M., Sánchez-Ferrero, J. C., Saunders, D., Seeger, K., Squares, R., Squares, S., Takeuchi, M., Tekaia, F., Turner, G., Vazquez De Aldana, C. R., Weidman, J., White, O., Woodward, J., Yu, J. H., Fraser, C., Galagan, J. E., Asai, K., Machida, M., Hall, N., Barrell, B. & Denning, D. W., Jan 26 2006, In : Nature. 439, 7075, 1 p.

Research output: Contribution to journalComment/debate

2005

Erratum: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species (Genome Biology)

Salzberg, S. L., Hotopp, J. C. D., Delcher, A. L., Pop, M., Smith, D. R., Eisen, M. B. & Nelson, W. C., Jul 27 2005, In : Genome biology. 6, 7, 402.

Research output: Contribution to journalComment/debate

Open Access