Sean Dixon Taverna

Associate Professor

20012019
If you made any changes in Pure, your changes will be visible here soon.

Research Output 2001 2019

Filter
Article
2019

Proteomic characterization of the arsenic response locus in S. cerevisiae

West, K. L., Byrum, S. D., Mackintosh, S. G., Edmondson, R. D., Taverna, S. D. & Tackett, A. J., Jan 1 2019, In : Epigenetics.

Research output: Contribution to journalArticle

Arsenic
Proteomics
Saccharomyces cerevisiae
Clustered Regularly Interspaced Short Palindromic Repeats
Transcriptional Activation
Biological Science Disciplines
Spinal Ganglia
Neurosciences
Sex Characteristics
Peripheral Nervous System
2018

Hydrazide Mimics for Protein Lysine Acylation to Assess Nucleosome Dynamics and Deubiquitinase Action

Bhat, S., Hwang, Y. S., Gibson, M. D., Morgan, M., Taverna, S. D., Zhao, Y., Wolberger, C., Poirier, M. G. & Cole, P. A., Aug 1 2018, In : Journal of the American Chemical Society. 140, 30, p. 9478-9485 8 p.

Research output: Contribution to journalArticle

Acylation
Nucleosomes
Lysine
Proteins
Histones

RNA-seq of spinal cord from nerve-injured rats after spinal cord stimulation

Stephens, K. E., Chen, Z., Sivanesan, E., Raja, S. N., Linderoth, B., Taverna, S. D. & Guan, Y., Dec 1 2018, In : Molecular Pain. 14

Research output: Contribution to journalArticle

Spinal Cord Stimulation
Spinal Nerves
Spinal Cord
RNA
Wounds and Injuries
2016

Dissecting relative contributions of cis-and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin

Xiong, J., Gao, S., Dui, W., Yang, W., Chen, X., Taverna, S. D., Pearlman, R. E., Ashlock, W., Miao, W. & Liu, Y., Dec 1 2016, In : Nucleic Acids Research. 44, 21, p. 10091-10105 15 p.

Research output: Contribution to journalArticle

Tetrahymena
Nucleosomes
Chromatin
Macronucleus
Tetrahymena thermophila

Reader domain specificity and lysine demethylase-4 family function

Su, Z., Wang, F., Lee, J. H., Stephens, K. E., Papazyan, R., Voronina, E., Krautkramer, K. A., Raman, A., Thorpe, J. J., Boersma, M. D., Kuznetsov, V. I., Miller, M. D., Taverna, S. D., Phillips, G. N. & Denu, J. M., Nov 14 2016, In : Nature Communications. 7, 13387.

Research output: Contribution to journalArticle

lysine
readers
Histones
Lysine
spermatogenesis

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

Hamilton, E. P., Kapusta, A., Huvos, P. E., Bidwell, S. L., Zafar, N., Tang, H., Hadjithomas, M., Krishnakumar, V., Badger, J. H., Caler, E. V., Russ, C., Zeng, Q., Fan, L., Levin, J. Z., Shea, T., Young, S. K., Hegarty, R., Daza, R., Gujja, S., Wortman, J. R. & 16 others, Birren, B. W., Nusbaum, C., Thomas, J., Carey, C. M., Pritham, E. J., Feschotte, C., Noto, T., Mochizuki, K., Papazyan, R., Taverna, S. D., Dear, P. H., Cassidy-Hanley, D. M., Xiong, J., Miao, W., Orias, E. & Coyne, R. S., Nov 28 2016, In : eLife. 5, NOVEMBER2016, e19090.

Research output: Contribution to journalArticle

Tetrahymena thermophila
Genes
Genome
Chromosomes
Tetrahymena
2015

Nucleosome competition reveals processive acetylation by the SAGA HAT module

Ringel, A. E., Cieniewicz, A. M., Taverna, S. D. & Wolberger, C., Oct 6 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 40, p. E5461-E5470

Research output: Contribution to journalArticle

Histone Acetyltransferases
Acetyltransferases
Nucleosomes
Acetylation
Histones

Purification of specific chromatin loci for proteomic analysis

Byrum, S. D., Taverna, S. D. & Tackett, A. J., 2015, In : Methods in molecular biology (Clifton, N.J.). 1228, p. 83-92 10 p.

Research output: Contribution to journalArticle

Proteomics
Chromatin
Histone Code
Post Translational Protein Processing
Equidae
2014

A CRISPR-based approach for proteomic analysis of a single genomic locus

Waldrip, Z. J., Byrum, S. D., Storey, A. J., Gao, J., Byrd, A. K., Mackintosh, S. G., Wahls, W. P., Taverna, S. D., Raney, K. D. & Tackett, A. J., 2014, In : Epigenetics. 9, 9, p. 1207-1211 5 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Proteomics
Chromatin
Histone Code
Guide RNA

A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions

Gilbert, T. M., McDaniel, S. L., Byrum, S. D., Cades, J. A., Dancy, B. C. R., Wade, H., Tackett, A. J., Strahl, B. D. & Taverna, S. D., Nov 1 2014, In : Molecular and Cellular Proteomics. 13, 11, p. 2883-2895 13 p.

Research output: Contribution to journalArticle

Acetyltransferases
Histones
Lysine
Elongation
Transcription

A selective phenelzine analogue inhibitor of histone demethylase LSD1

Prusevich, P., Kalin, J. H., Ming, S. A., Basso, M., Givens, J., Li, X., Hu, J., Taylor, M. S., Cieniewicz, A. M., Hsiao, P. Y., Huang, R., Roberson, H., Adejola, N., Avery, L. B., Casero, R. A., Taverna, S. D., Qian, J., Tackett, A. J., Ratan, R. R., McDonald, O. G. & 2 others, Feinberg, A. P. & Cole, P. A., Jun 20 2014, In : ACS Chemical Biology. 9, 6, p. 1284-1293 10 p.

Research output: Contribution to journalArticle

Histone Demethylases
Phenelzine
Lysine
Monoamine Oxidase
Methylation

Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis

Papazyan, R., Voronina, E., Chapman, J. R., Luperchio, T. R., Gilbert, T. M., Meier, E., Mackintosh, S. G., Shabanowitz, J., Tackett, A. J., Reddy, K. L., Coyne, R. S., Hunt, D. F., Liu, Y. & Taverna, S. D., Aug 26 2014, In : eLife. 2014, 3, e02996.

Research output: Contribution to journalArticle

Tetrahymena
Methylation
Heterochromatin
Meiosis
Histones

The bromodomain of gcn5 regulates site specificity of lysine acetylation on histone H3

Cieniewicz, A. M., Moreland, L., Ringel, A. E., Mackintosh, S. G., Raman, A., Gilbert, T. M., Wolberger, C., Tackett, A. J. & Taverna, S. D., Nov 1 2014, In : Molecular and Cellular Proteomics. 13, 11, p. 2896-2910 15 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
Acetylation
Histones
Lysine
Histone Code

Using S-adenosyl-L-homocysteine capture compounds to characterize S-adenosyl-L-methionine and S-adenosyl-L-homocysteine binding proteins

Brown, L. J., Baranowski, M., Wang, Y., Schrey, A. K., Lenz, T., Taverna, S. D., Cole, P. A. & Sefkow, M., Dec 15 2014, In : Analytical Biochemistry. 467, p. 14-21 8 p.

Research output: Contribution to journalArticle

S-Adenosylmethionine
Homocysteine
Carrier Proteins
Proteins
Fluorescence Polarization
2013

Purification of a specific native genomic locus for proteomic analysis

Byrum, S. D., Taverna, S. D. & Tackett, A. J., Nov 2013, In : Nucleic Acids Research. 41, 20

Research output: Contribution to journalArticle

Proteomics
Chromatin
Post Translational Protein Processing
Histones
Staphylococcal Protein A

Selective inhibition of p300 HAT blocks cell cycle progression, induces cellular senescence, and inhibits the DNA damage response in melanoma cells

Yan, G., Eller, M. S., Elm, C., Larocca, C. A., Ryu, B., Panova, I. P., Dancy, B. M., Bowers, E. M., Meyers, D. J., Lareau, L., Cole, P. A., Taverna, S. D. & Alani, R. M., Oct 2013, In : Journal of Investigative Dermatology. 133, 10, p. 2444-2452 9 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
Cell Aging
DNA Damage
Melanoma
Cell Cycle
2012

Azalysine analogues as probes for protein lysine deacetylation and demethylation

Dancy, B. C. R., Ming, S. A., Papazyan, R., Jelinek, C. A., Majumdar, A., Sun, Y., Dancy, B. M., Drury, W. J., Cotter, R. J., Taverna, S. D. & Cole, P. A., Mar 21 2012, In : Journal of the American Chemical Society. 134, 11, p. 5138-5148 11 p.

Research output: Contribution to journalArticle

Sirtuins
Adenosine Diphosphate Ribose
Peptides
Lysine
Administrative data processing

ChAP-MS: A method for identification of proteins and histone posttranslational modifications at a single genomic locus

Byrum, S. D., Raman, A., Taverna, S. D. & Tackett, A. J., Jul 26 2012, In : Cell Reports. 2, 1, p. 198-205 8 p.

Research output: Contribution to journalArticle

Histone Code
Post Translational Protein Processing
Histones
Chromatin
Purification
2011

Analysis of histone exchange during chromatin purification

Byrum, S., Mackintosh, S. G., Edmondson, R. D., Cheung, W. L., Taverna, S. D. & Tackett, A. J., Feb 1 2011, In : Journal of Integrated OMICS. 1, 1, p. 61-65 5 p.

Research output: Contribution to journalArticle

Histones
Chromatin
Purification
Ion exchange
Proteins

Conserved herpesvirus kinases target the DNA damage response pathway and TIP60 histone acetyltransferase to promote virus replication

Li, R., Zhu, J., Xie, Z., Liao, G., Liu, J., Chen, M. R., Hu, S., Woodard, C., Lin, J., Taverna, S. D., Desai, P., Ambinder, R. F., Hayward, G. S., Qian, J., Zhu, H. & Hayward, S. D., Oct 4 2011, In : Cell Host and Microbe. 10, 4, p. 390-400 11 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
Herpesviridae
Virus Replication
DNA Damage
Phosphotransferases

MassSQUIRM: An assay for quantitative measurement of lysine demethylase activity

Blair, L. P., Avaritt, N. L., Huang, R., Cole, P. A., Taverna, S. D. & Tackett, A. J., Apr 2011, In : Epigenetics. 6, 4, p. 491-500 10 p.

Research output: Contribution to journalArticle

Methylation
Lysine
Histones
Gene Expression
Chromatin

Quantitative analysis of histone exchange for transcriptionally active chromatin

Byrum, S. D., Taverna, S. D. & Tackett, A. J., Jul 7 2011, In : Journal of Clinical Bioinformatics. 1, 1, 17.

Research output: Contribution to journalArticle

Histones
Chromatin
Post Translational Protein Processing
Computational Biology
Histone Code
2010

Reader's block

Taverna, S. D. & Cole, P. A., Dec 23 2010, In : Nature. 468, 7327, p. 1050-1051 2 p.

Research output: Contribution to journalArticle

Neoplastic Gene Expression Regulation
Acetyltransferases
Enzyme Activation
Histone Deacetylases
molecular analysis
2009

A noncanonical bromodomain in the AAA ATPase protein Yta7 directs chromosomal positioning and barrier chromatin activity

Gradolatto, A., Smart, S. K., Byrum, S., Blair, L. P., Rogers, R. S., Kolar, E. A., Lavender, H., Larson, S. K., Aitchison, J. D., Taverna, S. D. & Tackett, A. J., Sep 2009, In : Molecular and Cellular Biology. 29, 17, p. 4604-4611 8 p.

Research output: Contribution to journalArticle

Histones
Chromatin
Adenosine Triphosphatases
Proteins
Histone Chaperones

Mapping the local protein interactome of the NuA3 histone acetyltransferase

Smart, S. K., Mackintosh, S. G., Edmondson, R. D., Taverna, S. D. & Tackett, A. J., Sep 2009, In : Protein Science. 18, 9, p. 1987-1997 11 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
Proteins
Chromatin
Nucleosomes
Signal transduction
2008

Saccharomyces cerevisiae Yta7 regulates histone gene expression

Gradolatto, A., Rogers, R. S., Lavender, H., Taverna, S. D., Allis, C. D., Aitchison, J. D. & Tackett, A. J., May 2008, In : Genetics. 179, 1, p. 291-304 14 p.

Research output: Contribution to journalArticle

Histones
Saccharomyces cerevisiae
Gene Expression
Chromatin
Genes
2007

How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers

Taverna, S. D., Li, H., Ruthenburg, A. J., Allis, C. D. & Patel, D. J., Nov 2007, In : Nature structural & molecular biology. 14, 11, p. 1025-1040 16 p.

Research output: Contribution to journalArticle

Histone Code
Chromatin
Post Translational Protein Processing
Histones
Epigenomics

"Hunt"-ing for post-translational modifications that underlie the histone code

Taverna, S. D., David Allis, C. & Hake, S. B., Jan 1 2007, In : International Journal of Mass Spectrometry. 259, 1-3, p. 40-45 6 p.

Research output: Contribution to journalArticle

chromatin
Histones
DNA
deoxyribonucleic acid
proteins

Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini

Taverna, S. D., Ueberheide, B. M., Liu, Y., Tackett, A. J., Dias, R. L., Shabanowitz, J., Chait, B. T., Hunt, D. F. & Allis, C. D., Feb 13 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 7, p. 2086-2091 6 p.

Research output: Contribution to journalArticle

Post Translational Protein Processing
Acetylation
Histones
Methylation
Biological Phenomena

Phosphorylation of the SQ H2A.X motif is required for proper meiosis and mitosis in Tetrahymena thermophila

Song, X., Gjoneska, E., Ren, Q., Taverna, S. D., Allis, C. D. & Gorovsky, M. A., Apr 2007, In : Molecular and Cellular Biology. 27, 7, p. 2648-2660 13 p.

Research output: Contribution to journalArticle

Macronucleus
Tetrahymena thermophila
Tetrahymena
Meiosis
Mitosis

RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena

Liu, Y., Taverna, S. D., Muratore, T. L., Shabanowitz, J., Hunt, D. F. & Allis, C. D., Jun 15 2007, In : Genes & development. 21, 12, p. 1530-1545 16 p.

Research output: Contribution to journalArticle

Tetrahymena
Heterochromatin
RNA Interference
Methylation
Polycomb-Group Proteins
2006

Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs

Taverna, S. D., Ilin, S., Rogers, R. S., Tanny, J. C., Lavender, H., Li, H., Baker, L., Boyle, J., Blair, L. P., Chait, BT., Patel, D. J., Aitchison, J. D., Tackett, A. J. & Allis, C. D., Dec 8 2006, In : Molecular Cell. 24, 5, p. 785-796 12 p.

Research output: Contribution to journalArticle

Open Reading Frames
Fingers
Acetylation
Histones
Histone Code
2004

The enhancement of histone H4 and H2A serine 1 phosphorylation during mitosis and S-phase is evolutionarily conserved

Barber, C. M., Turner, F. B., Wang, Y., Hagstrom, K., Taverna, S. D., Mollah, S., Ueberheide, B., Meyer, B. J., Hunt, D. F., Cheung, P. & Allis, C. D., May 2004, In : Chromosoma. 112, 7, p. 360-371 12 p.

Research output: Contribution to journalArticle

S Phase
Mitosis
Histones
Serine
Phosphorylation
2003

Antigen receptor loci poised for V(D)J rearrangement are broadly associated with BRG1 and flanked by peaks of histone H3 dimethylated at lysine 4

Morshead, K. B., Ciccone, D. N., Taverna, S. D., Allis, C. D. & Oettinger, M. A., Sep 30 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 20, p. 11577-11582 6 p.

Research output: Contribution to journalArticle

Immunoglobulin Heavy Chains
Antigen Receptors
T-Cell Antigen Receptor
Histones
Lysine
2002

Methylation of histone H3 at lysine 9 targets programmed DNA elimination in Tetrahymena

Taverna, S. D., Coyne, R. S. & Allis, C. D., Sep 20 2002, In : Cell. 110, 6, p. 701-711 11 p.

Research output: Contribution to journalArticle

Tetrahymena
Methylation
Histones
Lysine
Heterochromatin
2001

Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3

Jacobs, S. A., Taverna, S. D., Zhang, Y., Briggs, S. D., Li, J., Eissenberg, J. C., Allis, C. D. & Khorasanizadeh, S., Sep 17 2001, In : The EMBO journal. 20, 18, p. 5232-5241 10 p.

Research output: Contribution to journalArticle

Histones
Tail
Chromosomes
Proteins
Histone Code