Fingerprint Fingerprint is based on mining the text of the persons scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

Genes Medicine & Life Sciences
Genome Medicine & Life Sciences
Proteins Medicine & Life Sciences
Parasites Medicine & Life Sciences
Gene Mathematics
Arabidopsis Medicine & Life Sciences
Oryza sativa Medicine & Life Sciences
Sequence Analysis Medicine & Life Sciences

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Research Output 1999 2017

  • 44 Article
  • 2 Conference contribution

Defective HIV-1 Proviruses Are Expressed and Can Be Recognized by Cytotoxic T Lymphocytes, which Shape the Proviral Landscape

Pollack, R. A., Jones, R. B., Pertea, M., Bruner, K. M., Martin, A. R., Thomas, A. S., Capoferri, A. A., Beg, S. A., Huang, S. H., Karandish, S., Hao, H., Halper-Stromberg, E., Yong, P. C., Kovacs, C., Benko, E., Siliciano, R. F. & Ho, Y. C. Apr 12 2017 In : Cell Host and Microbe. 21, 4, p. 494-506.e4

Research output: Contribution to journalArticle

Proviruses
Cytotoxic T-Lymphocytes
HIV-1
T-Lymphocyte Epitopes
RNA

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Pertea, M., Kim, D., Pertea, G. M., Leek, J. T. & Salzberg, S. L. Sep 1 2016 In : Nature protocols. 11, 9, p. 1650-1667 18 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Software
RNA
Common Bile Duct Diseases
Cyclic AMP Receptor Protein

Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations

Deng, K. , Pertea, M. , Rongvaux, A. , Wang, L. , Durand, C. M. , Ghiaur, G. , Lai, J. , McHugh, H. L. , Hao, H. , Zhang, H. , Margolick, J. B. , Gurer, C. , Murphy, A. J. , Valenzuela, D. M. , Yancopoulos, G. D. , Deeks, S. G. , Strowig, T. , Kumar, P. , Siliciano, J. D. , Salzberg, S. L. & 3 others Flavell, R. A., Shan, L. & Siliciano, R. F. Jan 15 2015 In : Nature. 517, 7534, p. 381-385 5 p.

Research output: Contribution to journalArticle

Cytotoxic T-Lymphocytes
Viruses
Mutation
Epitopes
Pharmacology

Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms

Chang, T. C., Pertea, M., Lee, S., Salzberg, S. L. & Mendell, J. T. Sep 1 2015 In : Genome Research. 25, 9, p. 1401-1409 9 p.

Research output: Contribution to journalArticle

MicroRNAs
Genome
RNA
Proteins
Untranslated RNA

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Pertea, M., Pertea, G. M., Antonescu, C. M., Chang, T. C., Mendell, J. T. & Salzberg, S. L. 2015 In : Nature Biotechnology. 33, 3, p. 290-295 6 p.

Research output: Contribution to journalArticle

Transcriptome
RNA
Datasets
Software
Genes