Luciane Tsukamoto Kagohara

Instructor

20112018
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Fingerprint Dive into the research topics where Luciane Tsukamoto Kagohara is active. These topic labels come from the works of this person. Together they form a unique fingerprint.

  • 6 Similar Profiles
Neoplasms Medicine & Life Sciences
Epigenomics Medicine & Life Sciences
Tumors Chemical Compounds
Genes Medicine & Life Sciences
DNA Methylation Medicine & Life Sciences
Merkel cell polyomavirus Medicine & Life Sciences
Mutation Medicine & Life Sciences
Phosphotransferases Medicine & Life Sciences

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Research Output 2011 2018

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

Sherman, T. D., Tsukamoto Kagohara, L., Cao, R., Cheng, R., Satriano, M., Considine, M., Krigsfeld, G., Ranaweera, R., Tang, Y., Jablonski, S. A., Stein-O'Brien, G., Gaykalova, D., Weiner, L. M., Chung, C. H. & Fertig, E., Jun 1 2018, In : PLoS computational biology. 14, 4, p. e1006935

Research output: Contribution to journalArticle

Open Access
Statistical Modeling
Bioinformatics
Gene Expression Data
Gene expression
Mathematical Modeling

Epigenetic regulation of gene expression in cancer: Techniques, resources and analysis

Tsukamoto Kagohara, L., Stein-O'Brien, G. L., Kelley, D., Flam, E., Wick, H. C., Danilova, L. V., Easwaran, H., Favorov, A., Qian, J., Gaykalova, D. & Fertig, E., Jan 1 2018, In : Briefings in Functional Genomics. 17, 1, p. 49-63 15 p.

Research output: Contribution to journalReview article

Gene Expression Regulation
Bioinformatics
Epigenomics
Gene expression
Throughput

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

Stein-O'Brien, G., Tsukamoto Kagohara, L., Li, S., Thakar, M., Ranaweera, R., Ozawa, H., Cheng, H., Considine, M., Schmitz, S., Favorov, A., Danilova, L. V., Califano, J. A., Izumchenko, E., Gaykalova, D., Chung, C. H. & Fertig, E., May 23 2018, In : Genome Medicine. 10, 1, 37.

Research output: Contribution to journalArticle

Epigenomics
DNA Methylation
Molecular Dynamics Simulation
RNA Sequence Analysis
Phenotype

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer

Afsari, B., Guo, T., Considine, M., Florea, L. D., Tsukamoto Kagohara, L., Stein-O'Brien, G. L., Kelley, D., Flam, E., Zambo, K. D., Ha, P. K., Geman, D., Ochs, M. F., Califano, J. A., Gaykalova, D., Favorov, A. & Fertig, E., Jun 1 2018, In : Bioinformatics. 34, 11, p. 1859-1867 9 p.

Research output: Contribution to journalArticle

Tumors
Tumor
Cancer
Protein Isoforms
Genes

Comparative mutational landscape analysis of patient-derived tumour xenografts

Brait Rodrigues De Oliveira, M., Izumchenko, E., Tsukamoto Kagohara, L., Long, S., Wysocki, P. T., Faherty, B., Fertig, E., Khor, T. O., Bruckheimer, E., Baia, G., Ciznadija, D., Sloma, I., Ben-Zvi, I., Paz, K. & Sidransky, D., Feb 14 2017, In : British Journal of Cancer. 116, 4, p. 515-523 9 p.

Research output: Contribution to journalArticle

Heterografts
Mutation
Neoplasms
Polymerase Chain Reaction
Exome