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Neoplasms Medicine & Life Sciences
Genome Medicine & Life Sciences
Genes Medicine & Life Sciences
Mutation Medicine & Life Sciences
Methylation Medicine & Life Sciences
DNA Methylation Medicine & Life Sciences
Epigenomics Medicine & Life Sciences
Gene Expression Medicine & Life Sciences

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Research Output 2001 2017

A novel functional splice variant of AKT3 defined by analysis of alternative splice expression in HPV-positive oropharyngeal cancers

Guo, T., Sakai, A., Afsari, B., Considine, M., Danilova, L., Favorov, A. V., Yegnasubramanian, S., Kelley, D. Z., Flam, E., Ha, P. K., Khan, Z., Wheelan, S. J., Gutkind, J. S., Fertig, E. J., Gaykalova, D. A. & Califano, J. Oct 1 2017 In : Cancer Research. 77, 19, p. 5248-5258 11 p.

Research output: Research - peer-reviewArticle

Oropharyngeal Neoplasms
Alternative Splicing
Methylation
Neoplasms
Squamous Cell Carcinoma

Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma

Fishbein, L. , Leshchiner, I. , Walter, V. , Danilova, L. , Robertson, A. G. , Johnson, A. R. , Lichtenberg, T. M. , Murray, B. A. , Ghayee, H. K. , Else, T. , Ling, S. , Jefferys, S. R. , de Cubas, A. A. , Wenz, B. , Korpershoek, E. , Amelio, A. L. , Makowski, L. , Rathmell, W. K. , Gimenez-Roqueplo, A. P. , Giordano, T. J. & 212 others Asa, S. L., Tischler, A. S., Akbani, R., Ally, A., Amar, L., Amelio, A. L., Arachchi, H., Asa, S. L., Auchus, R. J., Auman, J. T., Baertsch, R., Balasundaram, M., Balu, S., Bartsch, D. K., Baudin, E., Bauer, T., Beaver, A., Benz, C., Beroukhim, R., Beuschlein, F., Bodenheimer, T., Boice, L., Bowen, J., Bowlby, R., Brooks, D., Carlsen, R., Carter, S., Cassol, C. A., Cherniack, A. D., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cope, L., Crain, D., Curley, E., Danilova, L., de Cubas, A. A., de Krijger, R. R., Demchok, J. A., Deutschbein, T., Dhalla, N., Dimmock, D., Dinjens, W. N. M., Else, T., Eng, C., Eschbacher, J., Fassnacht, M., Felau, I., Feldman, M., Ferguson, M. L., Fiddes, I., Fishbein, L., Frazer, S., Gabriel, S. B., Gardner, J., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Getz, G., Geurts, J., Ghayee, H. K., Gimenez-Roqueplo, A. P., Giordano, T. J., Goldman, M., Graim, K., Gupta, M., Haan, D., Hahner, S., Hantel, C., Haussler, D., Hayes, D. N., Heiman, D. I., Hoadley, K. A., Holt, R. A., Hoyle, A. P., Huang, M., Hunt, B., Hutter, C. M., Jefferys, S. R., Johnson, A. R., Jones, S. J. M., Jones, C. D., Kasaian, K., Kebebew, E., Kim, J., Kimes, P., Knijnenburg, T., Korpershoek, E., Lander, E., Lawrence, M. S., Lechan, R., Lee, D., Leraas, K. M., Lerario, A., Leshchiner, I., Lichtenberg, T. M., Lin, P., Ling, S., Liu, J., LiVolsi, V. A., Lolla, L., Lotan, Y., Lu, Y., Ma, Y., Maison, N., Makowski, L., Mallery, D., Mannelli, M., Marquard, J., Marra, M. A., Matthew, T., Mayo, M., Méatchi, T., Meng, S., Merino, M. J., Mete, O., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Moore, R. A., Morozova, O., Morris, S., Mose, L. E., Mungall, A. J., Murray, B. A., Naresh, R., Nathanson, K. L., Newton, Y., Ng, S., Ni, Y., Noble, M. S., Nwariaku, F., Pacak, K., Parker, J. S., Paul, E., Penny, R., Perou, C. M., Perou, A. H., Pihl, T., Powers, J., Rabaglia, J., Radenbaugh, A., Ramirez, N. C., Rao, A., Rathmell, W. K., Riester, A., Roach, J., Robertson, A. G., Sadeghi, S., Saksena, G., Salama, S., Saller, C., Sandusky, G., Sbiera, S., Schein, J. E., Schumacher, S. E., Shelton, C., Shelton, T., Sheth, M., Shi, Y., Shih, J., Shmulevich, I., Simons, J. V., Sipahimalani, P., Skelly, T., Sofia, H. J., Sokolov, A., Soloway, M. G., Sougnez, C., Stuart, J., Sun, C., Swatloski, T., Tam, A., Tan, D., Tarnuzzer, R., Tarvin, K., Thiessen, N., Thorne, L. B., Timmers, H. J., Tischler, A. S., Tse, K., Uzunangelov, V., van Berkel, A., Veluvolu, U., Vicha, A., Voet, D., Waldmann, J., Walter, V., Wan, Y., Wang, Z., Wang, T. S., Weaver, J., Weinstein, J. N., Weismann, D., Wenz, B., Wilkerson, M. D., Wise, L., Wong, T., Wong, C., Wu, Y., Yang, L., Zelinka, T., Zenklusen, J. C., Zhang, J. . J., Zhang, W., Zhu, J., Zinzindohoué, F., Zmuda, E., Pacak, K., Nathanson, K. L. & Wilkerson, M. D. Feb 13 2017 In : Cancer Cell. 31, 2, p. 181-193 13 p.

Research output: Research - peer-reviewArticle

Paraganglioma
Pheochromocytoma
Genes
Gene Fusion
Precision Medicine

DNA methylation regulates TMEM16A/ANO1 expression through multiple CpG islands in head and neck squamous cell carcinoma

Finegersh, A., Kulich, S., Guo, T., Favorov, A. V., Fertig, E. J., Danilova, L. V., Gaykalova, D. A., Califano, J. A. & Duvvuri, U. Dec 1 2017 In : Scientific Reports. 7, 1, 15173

Research output: Research - peer-reviewArticle

CpG Islands
DNA Methylation
Carcinoma, squamous cell of head and neck
Keratinocytes
Methylation

Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures [Genome Biology. 17, (2016) (231)] DOI: 10.1186/s13059-016-1092-z

Şenbabaoglu, Y. , Gejman, R. S. , Winer, A. G. , Liu, M. , Van Allen, E. M. , de Velasco, G. , Miao, D. , Ostrovnaya, I. , Drill, E. , Luna, A. , Weinhold, N. , Lee, W. , Manley, B. J. , Khalil, D. N. , Kaffenberger, S. D. , Chen, Y. , Danilova, L. , Voss, M. H. , Coleman, J. A. , Russo, P. & 9 others Reuter, V. E., Chan, T. A., Cheng, E. H., Scheinberg, D. A., Li, M. O., Choueiri, T. K., Hsieh, J. J., Sander, C. & Hakimi, A. A. Mar 1 2017 In : Genome Biology. 18, 1, 46

Research output: Research - peer-reviewComment/debate

kidney cells
messenger RNA
carcinoma
Biological Sciences
neoplasms

GPX3 promoter methylation predicts platinum sensitivity in colorectal cancer

Pelosof, L., Yerram, S., Armstrong, T., Chu, N., Danilova, L., Yanagisawa, B., Hidalgo, M., Azad, N. & Herman, J. G. Jul 3 2017 (Accepted/In press) In : Epigenetics. p. 1-11 11 p.

Research output: Research - peer-reviewArticle

Platinum
Methylation
Colorectal Neoplasms
Heterografts
Cell Line