Fingerprint Fingerprint is based on mining the text of the persons scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

Neoplasms Medicine & Life Sciences
Genome Medicine & Life Sciences
Genes Medicine & Life Sciences
Mutation Medicine & Life Sciences
Squamous Cell Carcinoma Medicine & Life Sciences
Neck Medicine & Life Sciences
Methylation Medicine & Life Sciences
DNA Methylation Medicine & Life Sciences

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Research Output 2001 2017

Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma

Fishbein, L. , Leshchiner, I. , Walter, V. , Danilova, L. , Robertson, A. G. , Johnson, A. R. , Lichtenberg, T. M. , Murray, B. A. , Ghayee, H. K. , Else, T. , Ling, S. , Jefferys, S. R. , de Cubas, A. A. , Wenz, B. , Korpershoek, E. , Amelio, A. L. , Makowski, L. , Rathmell, W. K. , Gimenez-Roqueplo, A. P. , Giordano, T. J. & 212 others Asa, S. L., Tischler, A. S., Akbani, R., Ally, A., Amar, L., Amelio, A. L., Arachchi, H., Asa, S. L., Auchus, R. J., Auman, J. T., Baertsch, R., Balasundaram, M., Balu, S., Bartsch, D. K., Baudin, E., Bauer, T., Beaver, A., Benz, C., Beroukhim, R., Beuschlein, F., Bodenheimer, T., Boice, L., Bowen, J., Bowlby, R., Brooks, D., Carlsen, R., Carter, S., Cassol, C. A., Cherniack, A. D., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cope, L., Crain, D., Curley, E., Danilova, L., de Cubas, A. A., de Krijger, R. R., Demchok, J. A., Deutschbein, T., Dhalla, N., Dimmock, D., Dinjens, W. N. M., Else, T., Eng, C., Eschbacher, J., Fassnacht, M., Felau, I., Feldman, M., Ferguson, M. L., Fiddes, I., Fishbein, L., Frazer, S., Gabriel, S. B., Gardner, J., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Getz, G., Geurts, J., Ghayee, H. K., Gimenez-Roqueplo, A. P., Giordano, T. J., Goldman, M., Graim, K., Gupta, M., Haan, D., Hahner, S., Hantel, C., Haussler, D., Hayes, D. N., Heiman, D. I., Hoadley, K. A., Holt, R. A., Hoyle, A. P., Huang, M., Hunt, B., Hutter, C. M., Jefferys, S. R., Johnson, A. R., Jones, S. J. M., Jones, C. D., Kasaian, K., Kebebew, E., Kim, J., Kimes, P., Knijnenburg, T., Korpershoek, E., Lander, E., Lawrence, M. S., Lechan, R., Lee, D., Leraas, K. M., Lerario, A., Leshchiner, I., Lichtenberg, T. M., Lin, P., Ling, S., Liu, J., LiVolsi, V. A., Lolla, L., Lotan, Y., Lu, Y., Ma, Y., Maison, N., Makowski, L., Mallery, D., Mannelli, M., Marquard, J., Marra, M. A., Matthew, T., Mayo, M., Méatchi, T., Meng, S., Merino, M. J., Mete, O., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Moore, R. A., Morozova, O., Morris, S., Mose, L. E., Mungall, A. J., Murray, B. A., Naresh, R., Nathanson, K. L., Newton, Y., Ng, S., Ni, Y., Noble, M. S., Nwariaku, F., Pacak, K., Parker, J. S., Paul, E., Penny, R., Perou, C. M., Perou, A. H., Pihl, T., Powers, J., Rabaglia, J., Radenbaugh, A., Ramirez, N. C., Rao, A., Rathmell, W. K., Riester, A., Roach, J., Robertson, A. G., Sadeghi, S., Saksena, G., Salama, S., Saller, C., Sandusky, G., Sbiera, S., Schein, J. E., Schumacher, S. E., Shelton, C., Shelton, T., Sheth, M., Shi, Y., Shih, J., Shmulevich, I., Simons, J. V., Sipahimalani, P., Skelly, T., Sofia, H. J., Sokolov, A., Soloway, M. G., Sougnez, C., Stuart, J., Sun, C., Swatloski, T., Tam, A., Tan, D., Tarnuzzer, R., Tarvin, K., Thiessen, N., Thorne, L. B., Timmers, H. J., Tischler, A. S., Tse, K., Uzunangelov, V., van Berkel, A., Veluvolu, U., Vicha, A., Voet, D., Waldmann, J., Walter, V., Wan, Y., Wang, Z., Wang, T. S., Weaver, J., Weinstein, J. N., Weismann, D., Wenz, B., Wilkerson, M. D., Wise, L., Wong, T., Wong, C., Wu, Y., Yang, L., Zelinka, T., Zenklusen, J. C., Zhang, J. . J., Zhang, W., Zhu, J., Zinzindohoué, F., Zmuda, E., Pacak, K., Nathanson, K. L. & Wilkerson, M. D. Feb 13 2017 In : Cancer Cell. 31, 2, p. 181-193 13 p.

Research output: Contribution to journalArticle

Paraganglioma
Pheochromocytoma
Genes
Germ-Line Mutation
Phosphotransferases

Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures [Genome Biology. 17, (2016) (231)] DOI: 10.1186/s13059-016-1092-z

Şenbabaoglu, Y. , Gejman, R. S. , Winer, A. G. , Liu, M. , Van Allen, E. M. , de Velasco, G. , Miao, D. , Ostrovnaya, I. , Drill, E. , Luna, A. , Weinhold, N. , Lee, W. , Manley, B. J. , Khalil, D. N. , Kaffenberger, S. D. , Chen, Y. , Danilova, L. , Voss, M. H. , Coleman, J. A. , Russo, P. & 9 others Reuter, V. E., Chan, T. A., Cheng, E. H., Scheinberg, D. A., Li, M. O., Choueiri, T. K., Hsieh, J. J., Sander, C. & Hakimi, A. A. Mar 1 2017 In : Genome Biology. 18, 1, 46

Research output: Contribution to journalComment/debate

kidney cells
messenger RNA
carcinoma
Biological Sciences
neoplasms

GPX3 promoter methylation predicts platinum sensitivity in colorectal cancer

Pelosof, L., Yerram, S., Armstrong, T., Chu, N., Danilova, L., Yanagisawa, B., Hidalgo, M., Azad, N. & Herman, J. G. Jul 3 2017 In : Epigenetics. p. 1-11 11 p.

Research output: Contribution to journalArticle

Platinum
Methylation
Colorectal Neoplasms
Heterografts
Cell Line

Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma

Robertson, A. G. , Shih, J. , Yau, C. , Gibb, E. A. , Oba, J. , Mungall, K. L. , Hess, J. M. , Uzunangelov, V. , Walter, V. , Danilova, L. , Lichtenberg, T. M. , Kucherlapati, M. , Kimes, P. K. , Tang, M. , Penson, A. , Babur, O. , Akbani, R. , Bristow, C. A. , Hoadley, K. A. , Iype, L. & 191 others Chang, M. T., Abdel-Rahman, M. H., Akbani, R., Ally, A., Auman, J. T., Babur, O., Balasundaram, M., Balu, S., Benz, C., Beroukhim, R., Birol, I., Bodenheimer, T., Bowen, J., Bowlby, R., Bristow, C. A., Brooks, D., Carlsen, R., Cebulla, C. M., Chang, M. T., Cherniack, A. D., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cibulskis, C., Cibulskis, K., Cope, L., Coupland, S. E., Danilova, L., Defreitas, T., Demchok, J. A., Desjardins, L., Dhalla, N., Esmaeli, B., Felau, I., Ferguson, M. L., Frazer, S., Gabriel, S. B., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Gershenwald, J. E., Getz, G., Gibb, E. A., Griewank, K. G., Grimm, E. A., Hayes, D. N., Hegde, A. M., Heiman, D. I., Helsel, C., Hess, J. M., Hoadley, K. A., Hobensack, S., Holt, R. A., Hoyle, A. P., Hu, X., Hutter, C. M., Jager, M. J., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Kandoth, C., Kasaian, K., Kim, J., Kimes, P. K., Kucherlapati, M., Kucherlapati, R., Lander, E., Lawrence, M. S., Lazar, A. J., Lee, S., Leraas, K. M., Lichtenberg, T. M., Lin, P., Liu, J., Liu, W., Lolla, L., Lu, Y., Iype, L., Ma, Y., Mahadeshwar, H. S., Mariani, O., Marra, M. A., Mayo, M., Meier, S., Meng, S., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Moore, R. A., Mose, L. E., Mungall, A. J., Mungall, K. L., Murray, B. A., Naresh, R., Noble, M. S., Oba, J., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Penson, A., Perou, C. M., Pihl, T., Pilarski, R., Protopopov, A., Radenbaugh, A., Rai, K., Ramirez, N. C., Ren, X., Reynolds, S. M., Roach, J., Robertson, A. G., Roman-Roman, S., Roszik, J., Sadeghi, S., Saksena, G., Sastre, X., Schadendorf, D., Schein, J. E., Schoenfield, L., Schumacher, S. E., Seidman, J., Seth, S., Sethi, G., Sheth, M., Shi, Y., Shields, C., Shih, J., Shmulevich, I., Simons, J. V., Singh, A. D., Sipahimalani, P., Skelly, T., Sofia, H., Soloway, M. G., Song, X., Stern, M. H., Stuart, J., Sun, Q., Sun, H., Tam, A., Tan, D., Tang, M., Tang, J., Tarnuzzer, R., Taylor, B. S., Thiessen, N., Thorsson, V., Tse, K., Uzunangelov, V., Veluvolu, U., Verhaak, R. G. W., Voet, D., Walter, V., Wan, Y., Wang, Z., Weinstein, J. N., Wilkerson, M. D., Williams, M. D., Wise, L., Woodman, S. E., Wong, T., Wu, Y., Yang, L., Yang, L., Yau, C., Zenklusen, J. C., Zhang, J., Zhang, H., Zmuda, E., Cherniack, A. D., Benz, C., Mills, G. B., Verhaak, R. G. W., Griewank, K. G., Felau, I., Zenklusen, J. C., Gershenwald, J. E., Schoenfield, L., Lazar, A. J., Abdel-Rahman, M. H., Roman-Roman, S., Stern, M. H., Cebulla, C. M., Williams, M. D., Jager, M. J., Coupland, S. E., Esmaeli, B., Kandoth, C. & Woodman, S. E. Aug 14 2017 In : Cancer Cell. 32, 2, p. 204-220.e15

Research output: Contribution to journalArticle

Melanoma
Monosomy
DNA Methylation
Mutation
Neoplasms

Integrative computational analysis of transcriptional and epigenetic alterations implicates DTX1 as a putative tumor suppressor gene in HNSCC

Gaykalova, D. A., Zizkova, V., Guo, T., Tiscareno, I., Wei, Y., Vatapalli, R., Hennessey, P. T., Ahn, J., Danilova, L., Khan, Z., Bishop, J. A., Silvio Gutkind, J., Koch, W. M., Westra, W. H., Fertig, E. J., Ochs, M. F. & Califano, J. A. 2017 In : Oncotarget. 8, 9, p. 15349-15363 15 p.

Research output: Contribution to journalArticle

Tumor Suppressor Genes
Epigenomics
Squamous Cell Carcinoma
Neck
Neoplasms