Research Output 2004 2017

2017

Extra-epitopic hepatitis C virus polymorphisms confer resistance to broadly neutralizing antibodies by modulating binding to scavenger receptor B1

El-Diwany, R., Cohen, V. J., Mankowski, M. C., Wasilewski, L. N., Brady, J. K., Snider, A. E., Osburn, W. O., Murrell, B., Ray, S. C. & Bailey, J. R. Feb 1 2017 In : PLoS Pathogens. 13, 2, e1006235

Research output: Contribution to journalArticle

Scavenger Receptors
Neutralizing Antibodies
Hepacivirus
Epitopes
Monoclonal Antibodies
2016

Affinity maturation of a broadly neutralizing human monoclonal antibody that prevents acute hepatitis C virus infection in mice

Keck, Z. Y., Wang, Y., Lau, P., Lund, G., Rangarajan, S., Fauvelle, C., Liao, G. C., Holtsberg, F. W., Warfield, K. L., Aman, M. J., Pierce, B. G., Fuerst, T. R., Bailey, J. R., Baumert, T. F., Mariuzza, R. A., Kneteman, N. M. & Foung, S. K. H. Dec 1 2016 In : Hepatology. 64, 6, p. 1922-1933 12 p.

Research output: Contribution to journalArticle

Hepacivirus
Monoclonal Antibodies
Infection
Antiviral Agents
Antibodies

A hepatitis C virus envelope polymorphism confers resistance to neutralization by polyclonal sera and broadly neutralizing monoclonal antibodies

Wasilewski, L. N., El-Diwany, R., Munshaw, S., Snider, A. E., Brady, J. K., Osburn, W. O., Ray, S. C. & Bailey, J. R. 2016 In : Journal of Virology. 90, 7, p. 3773-3782 10 p.

Research output: Contribution to journalArticle

Neutralizing Antibodies
Hepacivirus
Monoclonal Antibodies
Serum
Hepatitis C virus

Factors Associated With the Control of Viral Replication and Virologic Breakthrough in a Recently Infected HIV-1 Controller

Walker-Sperling, V. E., Pohlmeyer, C. W., Veenhuis, R. T., May, M., Luna, K. A., Kirkpatrick, A. R., Laeyendecker, O., Cox, A. L., Carrington, M., Bailey, J. R., Arduino, R. C. & Blankson, J. N. Jul 6 2016 In : EBioMedicine.

Research output: Contribution to journalArticle

HIV-1
Blood Flow Velocity
Bulimia
T-cells
Natural Killer Cells

Hepatitis C virus resistance to broadly neutralizing antibodies measured using replication-competent virus and pseudoparticles

Wasilewski, L. N., Ray, S. C. & Bailey, J. R. Nov 1 2016 In : Journal of General Virology. 97, 11, p. 2883-2893 11 p., 000608

Research output: Contribution to journalArticle

Virus Replication
Neutralizing Antibodies
Hepacivirus
Proteins
Epitopes
2015
MicroRNAs
Hepacivirus
Hepatocytes
Infection
microRNA
Neutralizing Antibodies
Coinfection
Hepacivirus
Antibody Formation
HIV

Naturally selected hepatitis C virus polymorphisms confer broad neutralizing antibody resistance

Bailey, J. R., Wasilewski, L. N., Snider, A. E., El-Diwany, R., Osburn, W. O., Keck, Z., Foung, S. K. H. & Ray, S. C. Jan 2 2015 In : Journal of Clinical Investigation. 125, 1, p. 437-447 11 p.

Research output: Contribution to journalArticle

Neutralizing Antibodies
Hepacivirus
Cluster Analysis
Sequence Analysis
Vaccines
2014

Clearance of hepatitis C infection is associated with the early appearance of broad neutralizing antibody responses

Osburn, W. O., Snider, A. E., Wells, B. L., Latanich, R., Bailey, J. R., Thomas, D. L., Cox, A. L. & Ray, S. C. 2014 In : Hepatology. 59, 6, p. 2140-2151 12 p.

Research output: Contribution to journalArticle

Hepatitis C
Neutralizing Antibodies
Antibody Formation
Infection
Genotype
2013

Hepatitis C virus

Ray, S. C., Bailey, J. R. & Thomas, D. L. May 21 2013 Fields Virology: Sixth Edition. Wolters Kluwer Health Adis (ESP), Vol. 1

Research output: Chapter in Book/Report/Conference proceedingChapter

Hepacivirus

Multi-step inhibition explains HIV-1 protease inhibitor pharmacodynamics and resistance

Rabi, S. A., Laird, G. M., Durand, C. M., Laskey, S., Shan, L., Bailey, J. R., Chioma, S., Moore, R. D. & Siliciano, R. F. Sep 3 2013 In : Journal of Clinical Investigation. 123, 9, p. 3848-3860 13 p.

Research output: Contribution to journalArticle

HIV Protease Inhibitors
Protease Inhibitors
HIV-1
Life Cycle Stages
env Gene Products
2012

Computational reconstruction of bole1a, a representative synthetic hepatitis C virus subtype 1a genome

Munshaw, S., Bailey, J. R., Liu, L., Osburn, W. O., Burke, K. P., Cox, A. L. & Ray, S. C. May 2012 In : Journal of Virology. 86, 10, p. 5915-5921 7 p.

Research output: Contribution to journalArticle

Hepacivirus
Genome
Hepatitis C virus
Genes
genome

Constraints on viral evolution during chronic hepatitis C virus infection arising from a common-source exposure

Bailey, J. R., Laskey, S., Wasilewski, L. N., Munshaw, S., Fanning, L. J., Kenny-Walsh, E. & Ray, S. C. Dec 2012 In : Journal of Virology. 86, 23, p. 12582-12590 9 p.

Research output: Contribution to journalArticle

Chronic Hepatitis C
Hepacivirus
Infection
infection
Hepatitis C virus
2011
Highly Active Antiretroviral Therapy
HIV-1
T-Lymphocytes
Viral Load
HIV Infections

Unstimulated primary CD4+ T cells from HIV-1-positive elite suppressors are fully susceptible to HIV-1 entry and productive infection

Rabi, S. A., O'Connell, K. A., Nikolaeva, D., Bailey, J. R., Jilek, B. L., Shen, L., Page, K. R., Siliciano, R. F. & Blankson, J. N. Jan 2011 In : Journal of Virology. 85, 2, p. 979-986 8 p.

Research output: Contribution to journalArticle

Human immunodeficiency virus 1
T-lymphocytes
HIV-1
T-Lymphocytes
Infection
2010

Control of HIV-1 in elite suppressors despite ongoing replication and evolution in plasma virus

O'Connell, K. A., Brennan, T. P., Bailey, J. R., Ray, S. C., Siliciano, R. F. & Blankson, J. N. Jul 2010 In : Journal of Virology. 84, 14, p. 7018-7028 11 p.

Research output: Contribution to journalArticle

Cytotoxic T-Lymphocytes
HIV-1
Viruses
Viremia
Clone Cells

Evolution of the HIV-1 nef gene in HLA-B*57 Positive Elite Suppressors

Salgado, M., Brennan, T. P., O'Connell, K. A., Bailey, J. R., Ray, S. C., Siliciano, R. F. & Blankson, J. N. Nov 8 2010 In : Retrovirology. 7, 94

Research output: Contribution to journalArticle

nef Genes
gag Genes
HLA-B Antigens
HIV-1
Mutation

Raltegravir-induced cerebellar ataxia

Reiss, K. A., Bailey, J. R., Pham, P. A. & Gallant, J. E. Nov 13 2010 In : AIDS. 24, 17, p. 2757 1 p.

Research output: Contribution to journalArticle

Cerebellar Ataxia
2009

Elite suppressor-derived hiv-1 envelope glycoproteins exhibit reduced entry efficiency and kinetics

Lassen, K. G., Lobritz, M. A., Bailey, J. R., Johnston, S., Nguyen, S., Lee, B., Chou, T., Siliciano, R. F., Markowitz, M. & Arts, E. J. Apr 2009 In : PLoS Pathogens. 5, 4

Research output: Contribution to journalArticle

HIV-1
Glycoproteins
CCR5 Receptors
env Gene Products
Virus Internalization

Elucidating the elite: mechanisms of control in HIV-1 infection

O'Connell, K. A., Bailey, J. R. & Blankson, J. N. Dec 2009 In : Trends in Pharmacological Sciences. 30, 12, p. 631-637 7 p.

Research output: Contribution to journalArticle

HIV Infections
HIV-1
T-Lymphocytes
Electroretinography
T-cells

Evidence of CD8+ T-cell-mediated selective pressure on human immunodeficiency virus type 1 nef in HLA-B*57+ elite suppressors

Bailey, J. R., Brennan, T. P., O'Connell, K. A., Siliciano, R. F. & Blankson, J. N. Jan 2009 In : Journal of Virology. 83, 1, p. 88-97 10 p.

Research output: Contribution to journalArticle

HLA-B Antigens
HIV-1
T-Lymphocytes
T-lymphocytes
Viruses
2008
HLA Antigens
Viral Load
HIV-1
T-Lymphocytes
Viremia
HIV-1
HIV long-term survivors
Human immunodeficiency virus 1
Cytidine Deaminase

Transmission of human immunodeficiency virus type 1 from a patient who developed AIDS to an elite suppressor

Bailey, J. R., O'Connell, K., Yang, H. C., Han, Y., Xu, J., Jilek, B., Williams, T. M., Ray, S. C., Siliciano, R. F. & Blankson, J. N. Aug 2008 In : Journal of Virology. 82, 15, p. 7395-7410 16 p.

Research output: Contribution to journalArticle

HIV-1
T-Lymphocytes
HIV long-term survivors
Human immunodeficiency virus 1
T-lymphocytes
2007

Evolution of HIV-1 in an HLA-B*57-positive patient during virologic escape

Bailey, J. R., Zhang, H., Wegweiser, B. W., Yang, H. C., Herrera, L., Ahonkhai, A., Williams, T. M., Siliciano, R. F. & Blankson, J. N. Jul 1 2007 In : Journal of Infectious Diseases. 196, 1, p. 50-55 6 p.

Research output: Contribution to journalArticle

HLA-B Antigens
HIV-1
T-Lymphocytes
Mutation
T-Lymphocyte Epitopes

Isolation and characterization of replication-competent human immunodeficiency virus type 1 from a subset of elite suppressors

Blankson, J. N., Bailey, J. R., Thayil, S., Yang, H. C., Lassen, K., Lai, J., Gandhi, S. K., Siliciano, J. D., Williams, T. M. & Siliciano, R. F. Mar 2007 In : Journal of Virology. 81, 5, p. 2508-2518 11 p.

Research output: Contribution to journalArticle

HIV long-term survivors
HIV-1
Human immunodeficiency virus 1
Genes
viruses
2006

Crosscurrents in HIV-1 evolution

Blankson, J. N., Bailey, J. R. & Siliciano, R. F. Feb 2006 In : Nature Immunology. 7, 2, p. 121-122 2 p.

Research output: Contribution to journalArticle

T-Lymphocyte Epitopes
Viral Proteins
HIV-1
Epitopes
Immunity
HLA-B Antigens
HIV-1
Epitopes
Mutation
Viruses
Highly Active Antiretroviral Therapy
Neutralizing Antibodies
HIV-1
Viruses
neutralizing antibodies

Nuclear retention of multiply spliced HIV-1 RNA in resting CD4+ T cells.

Lassen, K. G., Ramyar, K. X., Bailey, J. R., Zhou, Y. & Siliciano, R. F. Jul 2006 In : PLoS Pathogens. 2, 7

Research output: Contribution to journalArticle

HIV-1
RNA
T-Lymphocytes
Polypyrimidine Tract-Binding Protein
Highly Active Antiretroviral Therapy

Planning for the HPV vaccine and its impact on cervical cancer prevention

Bailey, J. & Cymet, T. C. 2006 In : Comprehensive Therapy. 32, 2, p. 102-105 4 p.

Research output: Contribution to journalArticle

Papillomavirus Vaccines
Uterine Cervical Neoplasms
Viruses
Papilloma
Penile Neoplasms

Residual human immunodeficiency virus type 1 viremia in some patients on antiretroviral therapy is dominated by a small number of invariant clones rarely found in circulating CD4+ T cells

Bailey, J. R., Sedaghat, A. R., Kieffer, T., Brennan, T., Lee, P. K., Wind-Rotolo, M., Haggerty, C. M., Kamireddi, A. R., Liu, Y., Lee, J., Persaud, D., Gallant, J. E., Cofrancesco, J., Quinn, T. C., Wilke, C. O., Ray, S. C., Siliciano, J. D., Nettles, R. E. & Siliciano, R. F. Jul 2006 In : Journal of Virology. 80, 13, p. 6441-6457 17 p.

Research output: Contribution to journalArticle

Viremia
HIV-1
Clone Cells
Viruses
T-Lymphocytes
2004

Analysis of human immunodeficiency virus type 1 transcriptional elongation in resting CD4+ T cells in vivo

Lassen, K. G., Bailey, J. R. & Siliciano, R. F. Sep 2004 In : Journal of Virology. 78, 17, p. 9105-9114 10 p.

Research output: Contribution to journalArticle

HIV-1
T-Lymphocytes
T-lymphocytes
Human immunodeficiency virus 1
therapeutics
Glycogen Synthase Kinase 3
Protein Precursors
Capsid Proteins
Cytomegalovirus
Phosphorylation

Mechanisms of HIV-1 escape from immune responses and antiretroviral drugs

Bailey, J., Blankson, J. N., Wind-Rotolo, M. & Siliciano, R. F. Aug 2004 In : Current Opinion in Immunology. 16, 4, p. 470-476 7 p.

Research output: Contribution to journalArticle

HIV-1
B-Lymphocyte Epitopes
T-Lymphocyte Epitopes
Drug Combinations
Antiviral Agents