John Muschelli III

Research output

Research output per year 2011 2012 2015 2020 2021 2023

• 66 Article
• 3 Conference contribution
• 1 Chapter
• 1 Comment/debate
• 1 More
  • 1 Review article

Research output per year

Research output per year

Search results

• 2023

  ModelArray: An R package for statistical analysis of fixel-wise data

  Zhao, C., Tapera, T. M., Bagautdinova, J., Bourque, J., Covitz, S., Gur, R. E., Gur, R. C., Larsen, B., Mehta, K., Meisler, S. L., Murtha, K., Muschelli, J., Roalf, D. R., Sydnor, V. J., Valcarcel, A. M., Shinohara, R. T., Cieslak, M. & Satterthwaite, T. D., May 1 2023, In: NeuroImage. 271, 120037.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Statistical Models 100%
  • White Matter 81%
  • Datasets 70%
  • Memory 65%
  • Microcomputers 53%

• Open-source Tools for Training Resources–OTTR

  Savonen, C., Wright, C., Hoffman, A. M., Muschelli, J., Cox, K., Tan, F. J. & Leek, J. T., 2023, In: Journal of Statistics and Data Science Education. 31, 1, p. 57-65 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Open Source 100%
  • Training 77%
  • Open Sources 74%
  • Resources 62%
  • resources 29%
• 2022

  Bayesian deep learning outperforms clinical trial estimators of intracerebral and intraventricular hemorrhage volume

  Sharrock, M. F., Mould, W. A., Hildreth, M., Ryu, E. P., Walborn, N., Awad, I. A., Hanley, D. F. & Muschelli, J., Sep 1 2022, In: Journal of Neuroimaging.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Deep Learning 100%
  • Cerebral Hemorrhage 78%
  • Clinical Trials 47%
  • Hemorrhage 46%
  • Uncertainty 44%

• ciftiTools: A package for reading, writing, visualizing, and manipulating CIFTI files in R

  Pham, D. D., Muschelli, J. & Mejia, A. F., Apr 15 2022, In: NeuroImage. 250, 118877.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Gray Matter 100%
  • Reading 86%
  • Connectome 69%
  • Bayes Theorem 60%
  • Cerebellum 45%

• Comparison of Accelerometry-Based Measures of Physical Activity: Retrospective Observational Data Analysis Study

  Karas, M., Muschelli, J., Leroux, A., Urbanek, J. K., Wanigatunga, A. A., Bai, J., Crainiceanu, C. M. & Schrack, J. A., Jul 1 2022, In: JMIR mHealth and uHealth. 10, 7, e38077.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Accelerometry 100%
  • Data Analysis 55%
  • Baltimore 18%
  • Wrist 14%
  • Longitudinal Studies 12%

• Curating the Evidence About COVID-19 for Frontline Public Health and Clinical Care: The Novel Coronavirus Research Compendium

  the Novel Coronavirus Research Compendium Team, Mar 2022, In: Public health reports. 137, 2, p. 197-202 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • clinical care 100%
  • Coronavirus 98%
  • Preprints 79%
  • Pandemics 66%
  • public health 56%

• Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms

  Qi, G., Dutta, D., Leroux, A., Ray, D., Muschelli, J., Crainiceanu, C. & Chatterjee, N., Mar 2022, In: Genetic epidemiology. 46, 2, p. 122-138 17 p.

  Research output: Contribution to journal › Article › peer-review

  • Accelerometry 100%
  • Genetic Loci 90%
  • Sedentary Behavior 80%
  • Genome-Wide Association Study 77%
  • Exercise 47%

• Predictive performance of selected breath volatile organic carbon compounds in stage 1 lung cancer

  Smirnova, E., Mallow, C., Muschelli, J., Shao, Y., Thiboutot, J., Lam, A., Rule, A. M., Crainiceanu, C. & Yarmus, L., Jun 2022, In: Translational Lung Cancer Research. 11, 6, p. 1009-1018 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Volatile Organic Compounds 100%
  • Carbon 68%
  • Acetoin 66%
  • Lung Neoplasms 54%
  • Area Under Curve 16%
• 2021

  3D Deep Neural Network Segmentation of Intracerebral Hemorrhage: Development and Validation for Clinical Trials

  Sharrock, M. F., Mould, W. A., Ali, H., Hildreth, M., Awad, I. A., Hanley, D. F. & Muschelli, J., Jul 2021, In: Neuroinformatics. 19, 3, p. 403-415 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Intracranial Hemorrhages 100%
  • Cerebral Hemorrhage 95%
  • Deep neural networks 85%
  • Clinical Trials 57%
  • Computer Neural Networks 38%
  1 Scopus citations

• A multi-scanner neuroimaging data harmonization using RAVEL and ComBat

  Eshaghzadeh Torbati, M., Minhas, D. S., Ahmad, G., O'Connor, E. E., Muschelli, J., Laymon, C. M., Yang, Z., Cohen, A. D., Aizenstein, H. J., Klunk, W. E., Christian, B. T., Hwang, S. J., Crainiceanu, C. M. & Tudorascu, D. L., Dec 15 2021, In: NeuroImage. 245, 118703.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neuroimaging 100%
  • Alzheimer Disease 28%
  • Data Analysis 27%

• Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection among US Adults Using Data from the US National COVID Cohort Collaborative

  Bennett, T. D., Moffitt, R. A., Hajagos, J. G., Amor, B., Anand, A., Bissell, M. M., Bradwell, K. R., Bremer, C., Byrd, J. B., Denham, A., DeWitt, P. E., Gabriel, D., Garibaldi, B. T., Girvin, A. T., Guinney, J., Hill, E. L., Hong, S. S., Jimenez, H., Kavuluru, R., Kostka, K., & 25 othersLehmann, H. P., Levitt, E., Mallipattu, S. K., Manna, A., McMurry, J. A., Morris, M., Muschelli, J., Neumann, A. J., Palchuk, M. B., Pfaff, E. R., Qian, Z., Qureshi, N., Russell, S., Spratt, H., Walden, A., Williams, A. E., Wooldridge, J. T., Yoo, Y. J., Zhang, X. T., Zhu, R. L., Austin, C. P., Saltz, J. H., Gersing, K. R., Haendel, M. A. & Chute, C. G., Jul 13 2021, In: JAMA Network Open. 4, 7, p. E2116901

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • SARS Virus 100%
  • Odds Ratio 43%
  • Machine Learning 32%
  • Infections 32%
  • Logistic Models 25%

• Corrigendum: Neuroconductor: An R platform for medical imaging analysis (Biostatistics (2019) 20:2 (218-239) DOI: 10.1093/biostatistics/kxx068)

  Muschelli, J., Gherman, A., Fortin, J. P., Avants, B., Whitcher, B., Clayden, J. D., Caffo, B. S. & Crainiceanu, C. M., Jul 1 2021, In: Biostatistics. 22, 3, p. 685 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Biostatistics 100%
  • Diagnostic Imaging 68%
  • Emotions 52%

• Development of severe COVID-19 adaptive risk predictor (SCARP), a calculator to predict severe disease or death in Hospitalized patients with COVID-19

  Wongvibulsin, S., Garibaldi, B. T., Antar, A. A. R., Wen, J., Wang, M. C., Gupta, A., Bollinger, R., Xu, Y., Wang, K., Betz, J. F., Muschelli, J., Bandeen-Roche, K., Zeger, S. L. & Robinson, M. L., Jun 1 2021, In: Annals of internal medicine. 174, 6, p. 777-785 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Coronavirus 100%
  • Hospitalization 19%
  • Forests 15%
  • Area Under Curve 10%
  • Severe Acute Respiratory Syndrome 8%

• Diurnal physical activity patterns across ages in a large uk based cohort: The uk biobank study

  Wrobel, J., Muschelli, J. & Leroux, A., Feb 2 2021, In: Sensors. 21, 4, p. 1-14 14 p., 1545.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Aging of materials 100%
  • Exercise 81%
  • Volume 71%
  • Accelerometers 59%
  • Health 45%
  1 Scopus citations

• Interpreting blood GLUcose data with R package iglu

  Broll, S., Urbanek, J., Buchanan, D., Chun, E., Muschelli, J., Punjabi, N. M. & Gaynanova, I., Apr 2021, In: PloS one. 16, 4 April, e0248560.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Blood Glucose 100%
  • Glucose 75%
  • Data Analysis 12%

• Moderated t-tests for group-level fMRI analysis

  Wang, G., Muschelli, J. & Lindquist, M. A., Aug 15 2021, In: NeuroImage. 237, 118141.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Magnetic Resonance Imaging 100%
  • Statistics 77%
  • Sample Size 67%
  • Linear Models 39%
  • Connectome 35%

• Outcome-Stratified Analysis of Biomarker Trajectories for Patients Infected with Severe Acute Respiratory Syndrome Coronavirus 2

  Bowring, M. G., Wang, Z., Xu, Y., Betz, J., Muschelli, J., Garibaldi, B. T. & Zeger, S. L., Oct 1 2021, In: American journal of epidemiology. 190, 10, p. 2094-2106 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Severe Acute Respiratory Syndrome 100%
  • Coronavirus 97%
  • Lymphocyte Count 50%
  • Biomarkers 50%
  • Respiratory Rate 49%

• Patient trajectories among persons hospitalized for covid-19

  Garibaldi, B. T., Fiksel, J., Muschelli, J., Robinson, M. L., Rouhizadeh, M., Perin, J., Schumock, G., Nagy, P., Gray, J. H., Malapati, H., Ghobadi-Krueger, M., Niessen, T. M., Kim, B. S., Hill, P. M., Ahmed, M. S., Dobkin, E. D., Blanding, R., Abele, J., Woods, B., Harkness, K., & 8 othersThiemann, D. R., Bowring, M. G., Shah, A. B., Wang, M. C., Bandeen-Roche, K., Rosen, A., Zeger, S. L. & Gupta, A., Jan 1 2021, In: Annals of internal medicine. 174, 1, p. 33-41 9 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  • Coronavirus 100%
  • Nursing Homes 40%
  • Disease Progression 31%
  • Hypoalbuminemia 16%
  • Resource Allocation 15%
  20 Scopus citations

• Quantifying the Predictive Performance of Objectively Measured Physical Activity on Mortality in the UK Biobank

  Leroux, A., Xu, S., Kundu, P., Muschelli, J., Smirnova, E., Chatterjee, N. & Crainiceanu, C., Aug 1 2021, In: Journals of Gerontology - Series A Biological Sciences and Medical Sciences. 76, 8, p. 1486-1494 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Exercise 100%
  • Mortality 77%
  • Accelerometry 59%
  • Wrist 42%
  • Nutrition Surveys 24%

• Sex and Gender Differences in Testing, Hospital Admission, Clinical Presentation, and Drivers of Severe Outcomes from COVID-19

  Scully, E. P., Schumock, G., Fu, M., Massaccesi, G., Muschelli, J., Betz, J., Klein, E. Y., West, N. E., Robinson, M., Garibaldi, B. T., Bandeen-Roche, K., Zeger, S., Klein, S. L. & Gupta, A., Sep 1 2021, In: Open Forum Infectious Diseases. 8, 9, ofab448.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Sex Characteristics 100%
  • Severe Acute Respiratory Syndrome 61%
  • Coronavirus 59%
  • Health Behavior 24%
  • Biomarkers 23%

• The ANTsX ecosystem for quantitative biological and medical imaging

  Tustison, N. J., Cook, P. A., Holbrook, A. J., Johnson, H. J., Muschelli, J., Devenyi, G. A., Duda, J. T., Das, S. R., Cullen, N. C., Gillen, D. L., Yassa, M. A., Stone, J. R., Gee, J. C. & Avants, B. B., Apr 27 2021, In: Scientific reports. 11, 1, p. 9068 1 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Deep Learning 100%
  • Ecosystem 80%
  • Diagnostic Imaging 75%
  • Libraries 42%
  • Software 36%
• 2020

  An improved algorithm of white matter hyperintensity detection in elderly adults

  Ding, T., Cohen, A. D., O'Connor, E. E., Karim, H. T., Crainiceanu, A., Muschelli, J., Lopez, O., Klunk, W. E., Aizenstein, H. J., Krafty, R., Crainiceanu, C. M. & Tudorascu, D. L., 2020, In: NeuroImage: Clinical. 25, 102151.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • poly(divinyl-co-N-vinylpyrrolidinone) 100%
  • White Matter 54%
  • Elderly 40%
  • Alzheimer Disease 13%
  • Masks 8%
  2 Scopus citations

• A Publicly Available, High Resolution, Unbiased CT Brain Template

  Muschelli, J., 2020, Information Processing and Management of Uncertainty in Knowledge-Based Systems - 18th International Conference, IPMU 2020, Proceedings. Lesot, M-J., Vieira, S., Reformat, M. Z., Carvalho, J. P., Wilbik, A., Bouchon-Meunier, B. & Yager, R. R. (eds.). Springer, p. 358-366 9 p. (Communications in Computer and Information Science; vol. 1239 CCIS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Computed Tomography 100%
  • High Resolution 85%
  • Template 84%
  • Brain 76%
  • Tomography 67%

• ari: The Automated R Instructor

  Kross, S., Leek, J. T. & Muschelli, J., 2020, In: R Journal. 12, 1, p. 258-265 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Educational Technology 100%
  • Education 64%
  • Update 56%
  • Language 47%

• Postcardiac arrest neurological prognostication with quantitative regional cerebral densitometry

  Hannawi, Y., Muschelli, J., Mulder, M., Sharrock, M., Storm, C., Leithner, C., Crainiceanu, C. M. & Stevens, R. D., Sep 2020, In: Resuscitation. 154, p. 101-109 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Densitometry 100%
  • Head 60%
  • Tomography 56%
  • Heart Arrest 49%
  • Coma 34%
  2 Scopus citations

• Relationship of White Matter Lesions with Intracerebral Hemorrhage Expansion and Functional Outcome: MISTIE II and CLEAR III

  For the MISTIE and CLEAR Investigators, Oct 1 2020, In: Neurocritical care. 33, 2, p. 516-524 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cerebral Hemorrhage 100%
  • Hematoma 86%
  • White Matter 84%
  • Tomography 63%
  • Clinical Trials 15%
  1 Scopus citations

• Rxnat: An Open-Source R Package for XNAT-Based Repositories

  Gherman, A., Muschelli, J., Caffo, B. & Crainiceanu, C., Nov 9 2020, In: Frontiers in Neuroinformatics. 14, 572068.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neuroimaging 100%
  • Boidae 13%
  • Connectome 13%
  • Informatics 12%
  • Research Personnel 6%

• Statistical Methods for Processing Neuroimaging Data from Two Different Sites with a Down Syndrome Population Application

  Minhas, D. S., Yang, Z., Muschelli, J., Laymon, C. M., Mettenburg, J. M., Zammit, M. D., Johnson, S., Mathis, C. A., Cohen, A. D., Handen, B. L., Klunk, W. E., Crainiceanu, C. M., Christian, B. T. & Tudorascu, D. L., 2020, Information Processing and Management of Uncertainty in Knowledge-Based Systems - 18th International Conference, IPMU 2020, Proceedings. Lesot, M-J., Vieira, S., Reformat, M. Z., Carvalho, J. P., Wilbik, A., Bouchon-Meunier, B. & Yager, R. R. (eds.). Springer, p. 367-379 13 p. (Communications in Computer and Information Science; vol. 1239 CCIS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Neuroimaging 100%
  • Voxel 79%
  • Linear regression 70%
  • Statistical method 67%
  • Statistical methods 59%

• TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation in Multiple Sclerosis

  Valcarcel, A. M., Muschelli, J., Pham, D. L., Martin, M. L., Yushkevich, P., Brandstadter, R., Patterson, K. R., Schindler, M. K., Calabresi, P. A., Bakshi, R. & Shinohara, R. T., 2020, In: NeuroImage: Clinical. 27, 102256.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Multiple Sclerosis 100%
  • White Matter 41%
  • Bias 31%
  • Magnetic Resonance Imaging 30%
  • Masks 23%

• Template Creation for High-Resolution Computed Tomography Scans of the Lung in R Software

  Ryan, S. M., Vestal, B., Maier, L. A., Carlson, N. E. & Muschelli, J., Aug 2020, In: Academic radiology. 27, 8, p. e204-e215

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Software 100%
  • Tomography 90%
  • Lung 70%
  • Sarcoidosis 20%
  • Masks 19%

• “The doctor said formula would help me”: Health sector influences on use of infant formula in peri-urban Lima, Peru

  Rothstein, J. D., Caulfield, L. E., Broaddus-Shea, E. T., Muschelli, J., Gilman, R. H. & Winch, P. J., Jan 2020, In: Social Science and Medicine. 244, 112324.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  8 Scopus citations
• 2019

  crsra: A learning analytics tool for understanding student behaviour in massive open online courses

  Hadavand, A., Muschelli, J. & Leek, J., Aug 5 2019, In: Journal of Learning Analytics. 6, 2, p. 140-152 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Students 100%
  • learning 46%
  • Education 38%
  • student 33%
  • popularity 29%
  1 Scopus citations

• MIMoSA: An Approach to automatically segment T2 hyperintense and T1 hypointense lesions in multiple sclerosis

  Valcarcel, A. M., Linn, K. A., Khalid, F., Vandekar, S. N., Tauhid, S., Satterthwaite, T. D., Muschelli, J., Bakshi, R. & Shinohara, R. T., 2019, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Keyvan, F., Bakas, S., van Walsum, T., Kuijf, H., Crimi, A. & Reyes, M. (eds.). Springer Verlag, p. 47-56 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11383 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Multiple Sclerosis 100%
  • Magnetic Resonance Imaging 93%
  • Segmentation 76%
  • Magnetic resonance imaging 66%
  • Disability 48%

• Neuroconductor: An R platform for medical imaging analysis

  Muschelli, J., Gherman, A., Fortin, J. P., Avants, B., Whitcher, B., Clayden, J. D., Caffo, B. S. & Crainiceanu, C. M., Apr 1 2019, In: Biostatistics. 20, 2, p. 218-239 22 p.

  Research output: Contribution to journal › Article › peer-review

  • Diagnostic Imaging 100%
  • Software 73%
  • Programming Languages 36%
  • Quality Control 23%
  • Information Storage and Retrieval 22%
  18 Scopus citations

• Recommendations for Processing Head CT Data

  Muschelli, J., Sep 4 2019, In: Frontiers in Neuroinformatics. 13, 61.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Tomography 100%
  • Head 76%
  • Digital Imaging and Communications in Medicine (DICOM) 35%
  • Pipelines 29%
  • Brain 21%
  6 Scopus citations
• 2018

  A dual modeling approach to automatic segmentation of cerebral T2 hyperintensities and T1 black holes in multiple sclerosis

  Valcarcel, A. M., Linn, K. A., Khalid, F., Vandekar, S. N., Tauhid, S., Satterthwaite, T. D., Muschelli, J., Martin, M. L., Bakshi, R. & Shinohara, R. T., Jan 1 2018, In: NeuroImage: Clinical. 20, p. 1211-1221 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Multiple Sclerosis 100%
  • Area Under Curve 30%
  • Sequence Inversion 26%
  • Magnetic Resonance Imaging 25%
  • White Matter 17%
  1 Scopus citations

• Feasibility of Coping Effectiveness Training for Caregivers of Children with Autism Spectrum Disorder: a Genetic Counseling Intervention

  Haakonsen Smith, C., Turbitt, E., Muschelli, J., Leonard, L., Lewis, K. L., Freedman, B., Muratori, M. & Biesecker, B. B., Feb 1 2018, In: Journal of Genetic Counseling. 27, 1, p. 252-262 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Genetic Engineering 100%
  • Genetic Counseling 87%
  • Autism Spectrum Disorder 82%
  • Caregivers 68%
  • Self Efficacy 35%
  4 Scopus citations

• Freesurfer: Connecting the Freesurfer software with R.

  Muschelli, J., Sweeney, E. & Crainiceanu, C. M., 2018, In: F1000Research. 7, 599.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pipeline 100%
  • Software 65%
  • Brain 42%
  • Neuroimaging 39%
  • Surface 27%
  1 Scopus citations

• MIMoSA: An Automated Method for Intermodal Segmentation Analysis of Multiple Sclerosis Brain Lesions

  Valcarcel, A. M., Linn, K. A., Vandekar, S. N., Satterthwaite, T. D., Muschelli, J., Calabresi, P. A., Pham, D. L., Martin, M. L. & Shinohara, R. T., Jul 1 2018, In: Journal of Neuroimaging. 28, 4, p. 389-398 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Multiple Sclerosis 100%
  • poly(divinyl-co-N-vinylpyrrolidinone) 81%
  • White Matter 58%
  • Brain 55%
  • Datasets 25%
  22 Scopus citations

• Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

  Commowick, O., Istace, A., Kain, M., Laurent, B., Leray, F., Simon, M., Pop, S. C., Girard, P., Améli, R., Ferré, J. C., Kerbrat, A., Tourdias, T., Cervenansky, F., Glatard, T., Beaumont, J., Doyle, S., Forbes, F., Knight, J., Khademi, A., Mahbod, A., & 25 othersWang, C., McKinley, R., Wagner, F., Muschelli, J., Sweeney, E., Roura, E., Lladó, X., Santos, M. M., Santos, W. P., Silva-Filho, A. G., Tomas-Fernandez, X., Urien, H., Bloch, I., Valverde, S., Cabezas, M., Vera-Olmos, F. J., Malpica, N., Guttmann, C., Vukusic, S., Edan, G., Dojat, M., Styner, M., Warfield, S. K., Cotton, F. & Barillot, C., Dec 1 2018, In: Scientific reports. 8, 1, 13650.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Data Management 100%
  • Multiple Sclerosis 66%
  • Deep Learning 20%
  • Forests 17%
  • Machine Learning 16%
  51 Scopus citations

• Radiomic subtyping improves disease stratification beyond key molecular, clinical, and standard imaging characteristics in patients with glioblastoma

  Kickingereder, P., Neuberger, U., Bonekamp, D., Piechotta, P. L., Götz, M., Wick, A., Sill, M., Kratz, A., Shinohara, R. T., Jones, D. T. W., Radbruch, A., Muschelli, J., Unterberg, A., Debus, J., Schlemmer, H. P., Herold-Mende, C., Pfister, S., Von Deimling, A., Wick, W., Capper, D., & 2 othersMaier-Hein, K. H. & Bendszus, M., May 18 2018, In: Neuro-oncology. 20, 6, p. 848-857 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Molecular Imaging 100%
  • Glioblastoma 83%
  • Proportional Hazards Models 37%
  • O(6)-Methylguanine-DNA Methyltransferase 34%
  • Multiparametric Magnetic Resonance Imaging 29%
  76 Scopus citations
• 2017

  ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI

  Maier, O., Menze, B. H., von der Gablentz, J., Häni, L., Heinrich, M. P., Liebrand, M., Winzeck, S., Basit, A., Bentley, P., Chen, L., Christiaens, D., Dutil, F., Egger, K., Feng, C., Glocker, B., Götz, M., Haeck, T., Halme, H. L., Havaei, M., Iftekharuddin, K. M., & 29 othersJodoin, P. M., Kamnitsas, K., Kellner, E., Korvenoja, A., Larochelle, H., Ledig, C., Lee, J. H., Maes, F., Mahmood, Q., Maier-Hein, K. H., McKinley, R., Muschelli, J., Pal, C., Pei, L., Rangarajan, J. R., Reza, S. M. S., Robben, D., Rueckert, D., Salli, E., Suetens, P., Wang, C. W., Wilms, M., Kirschke, J. S., Krämer, U. M., Münte, T. F., Schramm, P., Wiest, R., Handels, H. & Reyes, M., Jan 1 2017, In: Medical image analysis. 35, p. 250-269 20 p.

  Research output: Contribution to journal › Article › peer-review

  • Benchmarking 100%
  • Magnetic resonance 95%
  • Imaging techniques 70%
  • Stroke 63%
  • Magnetic Resonance Imaging 61%
  204 Scopus citations

• PItcHPERFeCT: Primary Intracranial Hemorrhage Probability Estimation using Random Forests on CT

  Muschelli, J., Sweeney, E. M., Ullman, N. L., Vespa, P., Hanley, D. F. & Crainiceanu, C. M., 2017, In: NeuroImage: Clinical. 14, p. 379-390 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Forests 100%
  • Intracranial Hemorrhages 94%
  • Cerebral Hemorrhage 90%
  • Tomography 57%
  • Hemorrhage 36%
  22 Scopus citations

• Thrombolytic removal of intraventricular haemorrhage in treatment of severe stroke: results of the randomised, multicentre, multiregion, placebo-controlled CLEAR III trial

  CLEAR III Investigators, Feb 11 2017, In: The Lancet. 389, 10069, p. 603-611 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Tissue Plasminogen Activator 100%
  • Placebos 64%
  • Stroke 63%
  • Hemorrhage 60%
  • Odds Ratio 30%
  175 Scopus citations
• 2016

  Large-scale radiomic profiling of recurrent glioblastoma identifies an imaging predictor for stratifying anti-angiogenic treatment response

  Kickingereder, P., Götz, M., Muschelli, J., Wick, A., Neuberger, U., Shinohara, R. T., Sill, M., Nowosielski, M., Schlemmer, H. P., Radbruch, A., Wick, W., Bendszus, M., Maier-Hein, K. H. & Bonekamp, D., Dec 1 2016, In: Clinical Cancer Research. 22, 23, p. 5765-5771 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Glioblastoma 100%
  • Bevacizumab 37%
  • Biomarkers 21%
  • Principal Component Analysis 17%
  • Proxy 17%
  139 Scopus citations

• Preventive care delivery to young children with sickle cell disease

  Bundy, D. G., Muschelli, J., Clemens, G. D., Strous, J. J., Thompson, R. E., Casella, J. F. & Miller, M. R., 2016, In: Journal of Pediatric Hematology/Oncology. 38, 4, p. 294-300 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Preventive Medicine 100%
  • Sickle Cell Anemia 94%
  • Child 37%
  • Doppler Ultrasonography 22%
  • Antibiotic Prophylaxis 17%
  7 Scopus citations

• Relating multi-sequence longitudinal intensity profiles and clinical covariates in incident multiple sclerosis lesions

  Sweeney, E. M., Shinohara, R. T., Dewey, B. E., Schindler, M. K., Muschelli, J., Reich, D. S., Crainiceanu, C. M. & Eloyan, A., 2016, In: NeuroImage: Clinical. 10, p. 1-17 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Multiple Sclerosis 100%
  • Principal Component Analysis 72%
  • Neurologists 50%
  • Magnetic Resonance Imaging 45%
  • Biomarkers 44%
  10 Scopus citations

• Removing inter-subject technical variability in magnetic resonance imaging studies

  The Alzheimer's Disease Neuroimaging Initiative, May 15 2016, In: NeuroImage. 132, p. 198-212 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Linear Models 100%
  • Magnetic Resonance Imaging 84%
  • Alzheimer Disease 49%
  • Neuroimaging 28%
  • Cognitive Dysfunction 26%
  38 Scopus citations

• Reproducibility and bias in healthy brain segmentation: Comparison of two popular neuroimaging platforms

  Tudorascu, D. L., Karim, H. T., Maronge, J. M., Alhilali, L., Fakhran, S., Aizenstein, H. J., Muschelli, J. & Crainiceanu, C. M., 2016, In: Frontiers in Neuroscience. 10, NOV, 503.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Neuroimaging 100%
  • Software 83%
  • Brain 54%
  • Gray Matter 18%
  • White Matter 16%
  11 Scopus citations

• Safety and efficacy of minimally invasive surgery plus alteplase in intracerebral haemorrhage evacuation (MISTIE): a randomised, controlled, open-label, phase 2 trial

  Hanley, D. F., Thompson, R. E., Muschelli, J., Rosenblum, M., McBee, N., Lane, K., Bistran-Hall, A. J., Mayo, S. W., Keyl, P., Gandhi, D., Morgan, T. C., Ullman, N., Mould, W. A., Carhuapoma, J. R., Kase, C., Ziai, W., Thompson, C. B., Yenokyan, G., Huang, E., Broaddus, W. C., & 14 othersGraham, R. S., Aldrich, E. F., Dodd, R., Wijman, C., Caron, J. L., Huang, J., Camarata, P., Mendelow, A. D., Gregson, B., Janis, S., Vespa, P., Martin, N., Awad, I. & Zuccarello, M., Nov 1 2016, In: The Lancet Neurology. 15, 12, p. 1228-1237 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Minimally Invasive Surgical Procedures 100%
  • Cerebral Hemorrhage 95%
  • Tissue Plasminogen Activator 94%
  • Safety 51%
  • Hemorrhage 28%
  165 Scopus citations