1982 …2019
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Research Output 1982 2019

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2019

A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium

Lu, Y. C., Daphalapurkar, N. P., Knutsen, A. K., Glaister, J., Pham, D. L., Butman, J. A., Prince, J. L., Bayly, P. V. & Ramesh, K. T., Jan 1 2019, In : Annals of biomedical engineering.

Research output: Contribution to journalArticle

Brain
Magnetic resonance
Anisotropy
Tissue

Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures

Murphy, O. C., Kwakyi, O., Iftikhar, M., Zafar, S., Lambe, J., Pellegrini, N., Sotirchos, E. S., Gonzalez-Caldito, N., Ogbuokiri, E., Filippatou, A., Risher, H., Cowley, N., Feldman, S., Fioravante, N., Frohman, E. M., Frohman, T. C., Balcer, L. J., Prince, J. L., Channa, R., Calabresi, P. & 1 others, Saidha, S., Jan 1 2019, In : Multiple Sclerosis Journal.

Research output: Contribution to journalArticle

Multiple Sclerosis
Blood Vessels
Neuritis
Retinal Vessels
Optic Neuritis

Applications of a deep learning method for anti-aliasing and super-resolution in MRI

Zhao, C., Shao, M., Carass, A., Li, H., Dewey, B. E., Ellingsen, L. M., Woo, J., Guttman, M. A., Blitz, A. M., Stone, M., Calabresi, P. A., Halperin, H. & Prince, J. L., Jan 1 2019, In : Magnetic Resonance Imaging.

Research output: Contribution to journalArticle

Anti-aliasing
Magnetic resonance
Magnetic resonance imaging
Magnetic Resonance Spectroscopy
Learning

Aquaporin-4 IgG seropositivity is associated with worse visual outcomes after optic neuritis than MOG-IgG seropositivity and multiple sclerosis, independent of macular ganglion cell layer thinning

Sotirchos, E. S., Filippatou, A., Fitzgerald, K. C., Salama, S., Pardo, S., Wang, J., Ogbuokiri, E., Cowley, N. J., Pellegrini, N., Murphy, O. C., Mealy, M. A., Prince, J. L., Levy, M., Calabresi, P. A. & Saidha, S., Jan 1 2019, (Accepted/In press) In : Multiple Sclerosis Journal.

Research output: Contribution to journalArticle

Aquaporin 4
Optic Neuritis
Ganglia
Multiple Sclerosis
Myelin-Oligodendrocyte Glycoprotein

Atlas-based tongue muscle correlation analysis from tagged and high- resolution magnetic resonance imaging

Xing, F., Stone, M., Goldsmith, T., Prince, J. L., Fakhri, G. E. & Woo, J., Jul 2019, In : Journal of Speech, Language, and Hearing Research. 62, 7, p. 2258-2269 12 p.

Research output: Contribution to journalArticle

Atlases
Tongue
Magnetic Resonance Imaging
Muscles
Mouth Floor

Brain ventricle parcellation using a deep neural network: Application to patients with ventriculomegaly

Shao, M., Han, S., Carass, A., Li, X., Blitz, A. M., Shin, J., Prince, J. L. & Ellingsen, L. M., Jan 1 2019, In : NeuroImage: Clinical. 23, 101871.

Research output: Contribution to journalArticle

Open Access
Brain
Normal Pressure Hydrocephalus
Brain Diseases
Hydrocephalus
Cerebrospinal Fluid

DeepHarmony: A deep learning approach to contrast harmonization across scanner changes

Dewey, B. E., Zhao, C., Reinhold, J. C., Carass, A., Fitzgerald, K. C., Sotirchos, E. S., Saidha, S., Oh, J., Pham, D. L., Calabresi, P. A., van Zijl, P. C. M. & Prince, J. L., Jan 1 2019, In : Magnetic Resonance Imaging.

Research output: Contribution to journalArticle

Magnetic resonance imaging
Magnetic Resonance Imaging
Learning
Atrophy
Hardware

Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning

Woo, J., Xing, F., Prince, J. L., Stone, M., Green, J. R., Goldsmith, T., Reese, T. G., Wedeen, V. J. & El Fakhri, G., May 1 2019, In : Journal of the Acoustical Society of America. 145, 5, p. EL423-EL429

Research output: Contribution to journalArticle

Open Access
tongue
muscles
learning
magnetic resonance
cancer

Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis

Sotirchos, E. S., Gonzalez-Caldito, N., Dewey, B. E., Fitzgerald, K., Glaister, J., Filippatou, A., Ogbuokiri, E., Feldman, S., Kwakyi, O., Risher, H., Crainiceanu, C. M., Pham, D. L., Van Zijl, P. C., Mowry, E. M., Reich, D. S., Prince, J. L., Calabresi, P. & Saidha, S., Jan 1 2019, In : Multiple Sclerosis Journal.

Research output: Contribution to journalArticle

Multiple Sclerosis
Atrophy
Therapeutics
Brain
Gray Matter

Layer boundary evolution method for macular OCT layer segmentation

Liu, Y., Carass, A., He, Y., Antony, B. J., Filippatou, A., Saidha, S., Solomon, S., Calabresi, P. & Prince, J. L., Mar 1 2019, In : Biomedical Optics Express. 10, 3, p. 1064-1080 17 p., 349227.

Research output: Contribution to journalArticle

Optical Coherence Tomography
boundary layers
tomography
retina
evaluation

Parallel deep neural networks for endoscopic oct image segmentation

Li, D., Wu, J., He, Y., Yao, X., Yuan, W., Chen, D., Park, H. C., Yu, S., Prince, J. L. & Li, X., Mar 1 2019, In : Biomedical Optics Express. 10, 3, p. 1126-1135 10 p., #349139.

Research output: Contribution to journalArticle

Eosinophilic Esophagitis
Esophagus
esophagus
Guinea Pigs
guinea pigs

Phase Image Texture Analysis for Motion Detection in Diffusion MRI (PITA-MDD)

Elsaid, N. M. H., Prince, J. L., Roys, S., Gullapalli, R. P. & Zhuo, J., Oct 2019, In : Magnetic Resonance Imaging. 62, p. 228-241 14 p.

Research output: Contribution to journalArticle

Image texture
Diffusion Magnetic Resonance Imaging
Magnetic resonance imaging
Imaging techniques
Fibers

Quantifying Tongue Tip Shape in Apical and Laminal /s/: Contributions of Palate Shape

Stone, M., Gomez, A. D., Zhuo, J., Tchouaga, A. L. & Prince, J. L., Sep 20 2019, In : Journal of speech, language, and hearing research : JSLHR. 62, 9, p. 3149-3159 11 p.

Research output: Contribution to journalArticle

Palate
Tongue
Tooth
Magnetic Resonance Spectroscopy
Curvature

Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS

Fritz, N. E., Eloyan, A., Glaister, J., Dewey, B. E., Al-Louzi, O., Costello, M. G., Chen, M., Prince, J. L., Calabresi, P. & Zackowski, K. M., Mar 1 2019, In : Annals of Clinical and Translational Neurology. 6, 3, p. 586-595 10 p.

Research output: Contribution to journalArticle

Open Access
Multiple Sclerosis
Somatosensory Cortex
Prefrontal Cortex
Brain
Hallux
Optical Coherence Tomography
Multiple Sclerosis
Retina
Germany
2018

3D Measurements of Acceleration-Induced Brain Deformation via Harmonic Phase Analysis and Finite-Element Models

Gomez, A., Knutsen, A., Xing, F., Chan, D., Lu, Y. C., Pham, D., Bayly, P. V. & Prince, J. L., Jan 1 2018, (Accepted/In press) In : IEEE Transactions on Biomedical Engineering.

Research output: Contribution to journalArticle

Brain
Magnetic resonance
Imaging techniques
Motion estimation
Sensors

A Sparse Non-negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior from MRI

Woo, J., Prince, J. L., Stone, M., Xing, F., Gomez, A., Green, J. R., Hartnick, C. J., Brady, T. J., Reese, T. G., Wedeen, V. J. & El Fakhri, G., Sep 17 2018, (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticle

Factorization
Tongue
Muscle
Magnetic Resonance Imaging
Muscles

Brain and retinal atrophy in African-Americans versus Caucasian-Americans with multiple sclerosis: A longitudinal study

Caldito, N. G., Saidha, S., Sotirchos, E. S., Dewey, B. E., Cowley, N. J., Glaister, J., Fitzgerald, K., Al-Louzi, O., Nguyen, J., Rothman, A., Ogbuokiri, E., Fioravante, N., Feldman, S., Kwakyi, O., Risher, H., Kimbrough, D., Frohman, T. C., Frohman, E., Balcer, L., Crainiceanu, C. M. & 7 others, Van Zijl, P. C., Mowry, E. M., Reich, D. S., Oh, J., Pham, D. L., Prince, J. L. & Calabresi, P., Nov 1 2018, In : Brain. 141, 11, p. 3115-3129 15 p.

Research output: Contribution to journalArticle

African Americans
Multiple Sclerosis
Atrophy
Longitudinal Studies
Brain

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images

Carass, A., Cuzzocreo, J. L., Han, S., Hernandez-Castillo, C. R., Rasser, P. E., Ganz, M., Beliveau, V., Dolz, J., Ben Ayed, I., Desrosiers, C., Thyreau, B., Romero, J. E., Coupé, P., Manjón, J. V., Fonov, V. S., Collins, D. L., Ying, S. H., Onyike, C. U., Crocetti, D., Landman, B. A. & 3 others, Mostofsky, S. H., Thompson, P. M. & Prince, J. L., Dec 1 2018, In : NeuroImage. 183, p. 150-172 23 p.

Research output: Contribution to journalArticle

Cerebellum
Magnetic Resonance Spectroscopy
Pathology
Cerebellar Ataxia
Autistic Disorder

Dictionary-based fiber orientation estimation with improved spatial consistency

Ye, C. & Prince, J. L., Feb 1 2018, In : Medical Image Analysis. 44, p. 41-53 13 p.

Research output: Contribution to journalArticle

Fiber reinforced materials
Glossaries
Diffusion Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques

Intensity inhomogeneity correction of SD-OCT data using macular flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S., Calabresi, P. & Prince, J. L., Jan 1 2018, In : Medical Image Analysis. 43, p. 85-97 13 p.

Research output: Contribution to journalArticle

Optical tomography
Optical Coherence Tomography
Retina

Laplace-based modeling of fiber orientation in the tongue

Gomez, A., Elsaid, N., Stone, M. L., Zhuo, J. & Prince, J. L., Aug 1 2018, In : Biomechanics and Modeling in Mechanobiology. 17, 4, p. 1119-1130 12 p.

Research output: Contribution to journalArticle

Fiber Orientation
Fiber reinforced materials
Laplace
Tongue
Fiber

Simulation and Synthesis in Medical Imaging

Frangi, A. F., Tsaftaris, S. A. & Prince, J. L., Mar 1 2018, In : IEEE Transactions on Medical Imaging. 37, 3, p. 673-679 7 p.

Research output: Contribution to journalArticle

Medical imaging
Diagnostic Imaging
Cardiology
Oncology
Neurosciences

Spinal cord and infratentorial lesions in radiologically isolated syndrome are associated with decreased retinal ganglion cell/inner plexiform layer thickness

Filippatou, A., Shoemaker, T., Esch, M., Qutab, M., Gonzalez-Caldito, N., Prince, J. L., Mowry, E. M., Calabresi, P., Saidha, S. & Sotirchos, E. S., Jan 1 2018, (Accepted/In press) In : Multiple Sclerosis Journal.

Research output: Contribution to journalArticle

Retinal Ganglion Cells
Spinal Cord
Ganglia
Optical Coherence Tomography
Gadolinium
2017

Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans

Gonzalez Caldito, N., Antony, B., He, Y., Lang, A., Nguyen, J., Rothman, A., Ogbuokiri, E., Avornu, A., Balcer, L., Frohman, E., Frohman, T. C., Bhargava, P., Prince, J. L., Calabresi, P. & Saidha, S., Dec 15 2017, (Accepted/In press) In : Current Eye Research. p. 1-9 9 p.

Research output: Contribution to journalArticle

Retinaldehyde
Optical Coherence Tomography
Multiple Sclerosis
Nerve Fibers
Ganglia

A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics

Ganpule, S., Daphalapurkar, N. P., Ramesh, K. T., Knutsen, A. K., Pham, D. L., Bayly, P. V. & Prince, J. L., Jul 1 2017, In : Journal of Neurotrauma. 34, 13, p. 2154-2166 13 p.

Research output: Contribution to journalArticle

Head
Brain
Wounds and Injuries
Diffuse Axonal Injury
Limbic System

Automated segmentation of mouse OCT volumes (ASiMOV): Validation & clinical study of a light damage model

Antony, B. J., Kim, B. J., Lang, A., Carass, A., Prince, J. L. & Zack, D. J., Aug 1 2017, In : PLoS One. 12, 8, e0181059.

Research output: Contribution to journalArticle

clinical trials
Light
longitudinal studies
retina
mice

Cross contrast multi-channel image registration using image synthesis for MR brain images

Chen, M., Carass, A., Jog, A., Lee, J., Roy, S. & Prince, J. L., Feb 1 2017, In : Medical Image Analysis. 36, p. 2-14 13 p.

Research output: Contribution to journalArticle

Image registration
Brain
Image fusion
Atlases
Proxy

Disease-modifying therapies modulate retinal atrophy in multiple sclerosis: A retrospective study

Button, J., Al-Louzi, O., Lang, A., Bhargava, P., Newsome, S., Frohman, T., Balcer, L. J., Frohman, E. M., Prince, J. L., Calabresi, P. & Saidha, S., Feb 7 2017, In : Neurology. 88, 6, p. 525-532 8 p.

Research output: Contribution to journalArticle

Optical Coherence Tomography
Multiple Sclerosis
Atrophy
Relapsing-Remitting Multiple Sclerosis
Retrospective Studies
Fluoroscopy
Brachytherapy
Prostate
Seeds
X-Rays

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge

Carass, A., Roy, S., Jog, A., Cuzzocreo, J. L., Magrath, E., Gherman, A., Button, J., Nguyen, J., Prados, F., Sudre, C. H., Jorge Cardoso, M., Cawley, N., Ciccarelli, O., Wheeler-Kingshott, C. A. M., Ourselin, S., Catanese, L., Deshpande, H., Maurel, P., Commowick, O., Barillot, C. & 26 others, Tomas-Fernandez, X., Warfield, S. K., Vaidya, S., Chunduru, A., Muthuganapathy, R., Krishnamurthi, G., Jesson, A., Arbel, T., Maier, O., Handels, H., Iheme, L. O., Unay, D., Jain, S., Sima, D. M., Smeets, D., Ghafoorian, M., Platel, B., Birenbaum, A., Greenspan, H., Bazin, P. L., Calabresi, P., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L., Mar 1 2017, In : NeuroImage. 148, p. 77-102 26 p.

Research output: Contribution to journalArticle

Multiple Sclerosis
Research Personnel
Research
Datasets

Longitudinal multiple sclerosis lesion segmentation data resource

Carass, A., Roy, S., Jog, A., Cuzzocreo, J. L., Magrath, E., Gherman, A., Button, J., Nguyen, J., Bazin, P. L., Calabresi, P., Crainiceanu, C. M., Ellingsen, L. M., Reich, D. S., Prince, J. L. & Pham, D. L., Jun 1 2017, In : Data in Brief. 12, p. 346-350 5 p.

Research output: Contribution to journalArticle

multiple sclerosis
resources
segmentation
website
expert

Phase Vector Incompressible Registration Algorithm (PVIRA) for Motion Estimation from Tagged Magnetic Resonance Images

Xing, F., Woo, J., Gomez, A., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., Jul 2 2017, (Accepted/In press) In : IEEE Transactions on Medical Imaging.

Research output: Contribution to journalArticle

Image registration
Motion estimation
Magnetic resonance
Magnetic Resonance Spectroscopy
Tissue

Probabilistic tractography using Lasso bootstrap

Ye, C. & Prince, J. L., Jan 1 2017, In : Medical Image Analysis. 35, p. 544-553 10 p.

Research output: Contribution to journalArticle

Fiber reinforced materials
Diffusion Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques
Uncertainty

Random forest regression for magnetic resonance image synthesis

Jog, A., Carass, A., Roy, S., Pham, D. L. & Prince, J. L., Jan 1 2017, In : Medical Image Analysis. 35, p. 475-488 14 p.

Research output: Contribution to journalArticle

Magnetic resonance
Magnetic Resonance Spectroscopy
Tissue
Imaging techniques
Image analysis

Resting-state functional connectivity and cognitive dysfunction correlations in spinocerebelellar ataxia type 6 (SCA6)

Pereira, L., Airan, R. D., Fishman, A., Pillai, J., Kansal, K., Onyike, C. U., Prince, J. L., Ying, S. H. & Sair, H., 2017, (Accepted/In press) In : Human Brain Mapping.

Research output: Contribution to journalArticle

Ataxia
Executive Function
Magnetic Resonance Imaging
Psychomotor Performance
Spinocerebellar Ataxias

Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images

Woo, J., Xing, F., Stone, M., Green, J., Reese, T. G., Brady, T. J., Wedeen, V. J., Prince, J. L. & El Fakhri, G., Oct 7 2017, (Accepted/In press) In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. p. 1-13 13 p.

Research output: Contribution to journalArticle

Atlases
Tongue
Magnetic resonance imaging
Motion estimation
Cine Magnetic Resonance Imaging

Structural cerebellar correlates of cognitive and motor dysfunctions in cerebellar degeneration

Kansal, K., Yang, Z., Fishman, A. M., Sair, H., Ying, S. H., Jedynak, B. M., Prince, J. L. & Onyike, C. U., Mar 1 2017, In : Brain : a journal of neurology. 140, 3, p. 707-720 14 p.

Research output: Contribution to journalArticle

Cerebellar Diseases
Short-Term Memory
Cerebellum
Verbal Learning
Long-Term Memory

Temporal order of Alzheimer's disease-related cognitive marker changes in BLSA and WRAP longitudinal studies

Bilgel, M., Koscik, R. L., An, Y., Prince, J. L., Resnick, S. M., Johnson, S. C. & Jedynak, B. M., Jan 1 2017, In : Journal of Alzheimer's Disease. 59, 4, p. 1335-1347 13 p.

Research output: Contribution to journalArticle

Baltimore
Longitudinal Studies
Registries
Alzheimer Disease
Trail Making Test

Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort

Glaister, J., Carass, A., NessAiver, T., Stough, J. V., Saidha, S., Calabresi, P. & Prince, J. L., Sep 1 2017, In : NeuroImage. 158, p. 430-440 11 p.

Research output: Contribution to journalArticle

Validation Studies
Thalamus
Diffusion Tensor Imaging
Atlases
Multiple Sclerosis

The effects of palate features and glossectomy surgery on /s/ production

Grimm, D. L., Stone, M., Woo, J., Lee, J., Hwang, J. H., Bedrosian, G. E. & Prince, J. L., Dec 1 2017, In : Journal of Speech, Language, and Hearing Research. 60, 12, p. 3417-3425 9 p.

Research output: Contribution to journalArticle

Glossectomy
Palate
Tongue
surgery
Hard Palate
2016

A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation

Ye, C. & Prince, J. L., Dec 1 2016, In : Computerized Medical Imaging and Graphics. 54, p. 35-47 13 p.

Research output: Contribution to journalArticle

Bayes Theorem
Fiber reinforced materials
Diffusion Magnetic Resonance Imaging
Diffusion Tensor Imaging
Diffusion tensor imaging

A multivariate nonlinear mixed effects model for longitudinal image analysis: Application to amyloid imaging

Bilgel, M., Prince, J. L., Wong, D. F., Resnick, S. M. & Jedynak, B. M., Jul 1 2016, In : NeuroImage. 134, p. 658-670 13 p.

Research output: Contribution to journalArticle

Amyloid
Neuroimaging
Parietal Lobe
Biomarkers
Brain

Analysis of 3-D tongue motion from tagged and cine magnetic resonance images

Xing, F., Woo, J., Lee, J., Murano, E. Z., Stone, M. & Prince, J. L., Jun 1 2016, In : Journal of Speech, Language, and Hearing Research. 59, 3, p. 468-479 12 p.

Research output: Contribution to journalArticle

Tongue
Magnetic Resonance Spectroscopy
Glossectomy
Walkers
Muscles

A spatio-temporal atlas and statistical model of the tongue during speech from cine-MRI

Woo, J., Xing, F., Lee, J., Stone, M. & Prince, J. L., Apr 10 2016, (Accepted/In press) In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. p. 1-12 12 p.

Research output: Contribution to journalArticle

Cine Magnetic Resonance Imaging
Atlases
Statistical Models
Magnetic resonance
Tongue

Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease

Yang, Z., Ye, C., Bogovic, J. A., Carass, A., Jedynak, B. M., Ying, S. H. & Prince, J. L., Feb 15 2016, In : NeuroImage. 127, p. 435-444 10 p.

Research output: Contribution to journalArticle

Cerebellar Diseases
Spinocerebellar Ataxias
Cerebellum
Atrophy
Atlases

Consistent cortical reconstruction and multi-atlas brain segmentation

Huo, Y., Plassard, A. J., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A., Apr 5 2016, (Accepted/In press) In : NeuroImage.

Research output: Contribution to journalArticle

Atlases
Brain
Benchmarking
Population

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L., Aug 1 2016, In : Medical Image Analysis. 32, p. 243-256 14 p.

Research output: Contribution to journalArticle

Diffusion Magnetic Resonance Imaging
Fiber reinforced materials
Noise
Magnetic resonance
Tongue

Individual estimates of age at detectable amyloid onset for risk factor assessment

Bilgel, M., An, Y., Zhou, Y., Wong, D. F., Prince, J. L., Ferrucci, L. & Resnick, S. M., 2016, (Accepted/In press) In : Alzheimer's and Dementia.

Research output: Contribution to journalArticle

Age of Onset
Amyloid
Baltimore
Sex Education
Survival Analysis

Investigation of bias in continuous medical image label fusion

Xing, F., Prince, J. L. & Landman, B. A., Jun 1 2016, In : PLoS One. 11, 6, e0155862.

Research output: Contribution to journalArticle

Labels
Fusion reactions
Medical imaging
Diagnostic Imaging
Labeling