1982 …2019
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Research Output 1982 2019

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Conference contribution
2019

Automatic quality control using hierarchical shape analysis for cerebellum parcellation

Zuo, L., Han, S., Carass, A., Ying, S. H., Onyike, C. U. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109490J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

cerebellum
quality control
Quality Control
Cerebellum
Quality control

Cerebellum parcellation with convolutional neural networks

Han, S., He, Y., Carass, A., Ying, S. H. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109490K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

cerebellum
Cerebellum
Neural networks
Magnetic resonance
Magnetic Resonance Spectroscopy

Evaluating the impact of intensity normalization on MR image synthesis

Reinhold, J. C., Dewey, B. E., Carass, A. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109493H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

synthesis
Learning
preprocessing
image analysis
Image analysis

Large-scale parcellation of the ventricular system using convolutional neural networks

Atlason, H. E., Shao, M., Robertsson, V., Sigurdsson, S., Gudnason, V., Prince, J. L. & Ellingsen, L. M., Jan 1 2019, Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, 109530N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10953).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

brain
Labels
Brain
Neural networks
markers

Projection artifact suppression for inner retina in oct angiography

Liu, Y., Carass, A., Filippatou, A., He, Y., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., Apr 2019, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 592-596 5 p. 8759466. (Proceedings - International Symposium on Biomedical Imaging; vol. 2019-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Angiography
Optical tomography
Artifacts
Retina
Optical Coherence Tomography
2018

2D Modeling and Correction of Fan-Beam Scan Geometry in OCT

Chen, M., Gee, J. C., Prince, J. L. & Aguirre, G. K., Jan 1 2018, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Bogunovic, H., Snead, D., Garvin, M. K., Chen, X. J., Ciompi, F., Xu, Y., Maier-Hein, L., Veta, M., Trucco, E., Stoyanov, D., Rajpoot, N., van der Laak, J., Martel, A. & McKenna, S. (eds.). Springer Verlag, p. 328-335 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11039 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fans
Geometry
Modeling
Retina
Landmarks

A deep learning based anti-aliasing self super-resolution algorithm for MRI

Zhao, C., Carass, A., Dewey, B. E., Woo, J., Oh, J., Calabresi, P., Reich, D. S., Sati, P., Pham, D. L. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Schnabel, J. A., Davatzikos, C., Alberola-López, C., Fichtinger, G. & Frangi, A. F. (eds.). Springer Verlag, p. 100-108 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Anti-aliasing
Aliasing
Super-resolution
Magnetic resonance
Magnetic resonance imaging

A novel filtering approach for 3D harmonic phase analysis of tagged MRI

Wang, X., Stone, M. L., Prince, J. L. & Gomez, A., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057414

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Benchmarking
Magnetic resonance
magnetic resonance
High pass filters
Magnetic Resonance Imaging

Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation

Zuo, L., Carass, A., Han, S. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 10578. 105780D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hidden Markov models
cerebellum
delineation
Cerebellum
Image classification

Cross-modality image synthesis from unpaired data using cyclegan: Effects of gradient consistency loss and training data size

Hiasa, Y., Otake, Y., Takao, M., Matsuoka, T., Takashima, K., Carass, A., Prince, J. L., Sugano, N. & Sato, Y., Jan 1 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 31-41 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modality
Synthesis
Gradient
Magnetic resonance imaging
Muscle

Deep harmonization of inconsistent mr data for consistent volume segmentation

Dewey, B. E., Zhao, C., Carass, A., Oh, J., Calabresi, P., Van Zijl, P. C. & Prince, J. L., Jan 1 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 20-30 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance
Inconsistent
Image analysis
Learning systems
Brain

Deformable model reconstruction of the subarachnoid space

Glaister, J., Shao, M., Li, X., Carass, A., Roy, S., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 1057431

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Subarachnoid Space
Magnetic resonance imaging
Neurodegenerative diseases
Cerebrospinal fluid
Volume measurement

Dice overlap measures for objects of unknown number: Application to lesion segmentation

Oguz, I., Carass, A., Pham, D. L., Roy, S., Subbana, N., Calabresi, P., Yushkevich, P. A., Shinohara, R. T. & Prince, J. L., Jan 1 2018, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 3rd International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Revised Selected Papers. Springer Verlag, p. 3-14 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10670 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dice
Overlap
Segmentation
Unknown
Image segmentation

Improving self super resolution in magnetic resonance images

Goyal, S., Zhao, C., Jog, A., Prince, J. L. & Carass, A., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 10578. 1057814

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance
Image quality
magnetic resonance
Magnetic Resonance Spectroscopy
Post and Core Technique

Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT

Reaungamornrat, S., Carass, A., He, Y., Saidha, S., Calabresi, P. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741B

Research output: Chapter in Book/Report/Conference proceedingConference contribution

retina
Image registration
Image quality
scanners
Retina

Inverse biomechanical modeling of the tongue via machine learning and synthetic training data

Tolpadi, A. A., Stone, M. L., Carass, A., Prince, J. L. & Gomez, A., Jan 1 2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). SPIE, Vol. 10576. 1057606

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Flaps
machine learning
tongue
Magnetic resonance
Tongue

Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas

Shao, M., Carass, A., Li, X., Dewey, B. E., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10578. 105780F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Normal Pressure Hydrocephalus
Atlases
Hydrocephalus
brain
Brain

Multi-layer fast level set segmentation for macular OCT

Liu, Y., Carass, A., Solomon, S., Saidha, S., Calabresi, P. & Prince, J. L., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 1445-1448 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
Retina
Experiments

Quantifying tensor field similarity with global distributions and optimal transport

Gomez, A. D., Stone, M. L., Bayly, P. V. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Fichtinger, G., Davatzikos, C., Alberola-López, C., Frangi, A. F. & Schnabel, J. A. (eds.). Springer Verlag, p. 428-436 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11071 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optimal Transport
Tensors
Tensor
Histogram
Sorting

Self super-resolution for magnetic resonance images using deep networks

Zhao, C., Carass, A., Dewey, B. E. & Prince, J. L., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 365-368 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Magnetic resonance
Image resolution
Magnetic Resonance Spectroscopy
Imaging techniques

Shortcomings of ventricle segmentation using deep convolutional networks

Shao, M., Han, S., Carass, A., Li, X., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Understanding and Interpreting Machine Learning in Medical Image Computing Applications - First International Workshops MLCN 2018, DLF 2018, and iMIMIC 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Reyes, M., Cardoso, M. J., Silva, C. A., Stoyanov, D., Maier-Hein, L., Pereira, S., Kia, S. M., Oguz, I., Landman, B., Martel, A., Duchesnay, E., Lofstedt, T., Marquand, A. F. & Meier, R. (eds.). Springer Verlag, p. 79-86 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11038 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Segmentation
Magnetic Resonance Image
Magnetic resonance
Neural Networks
Neural networks

Strain map of the tongue in normal and ALS speech patterns from tagged and diffusion MRI

Xing, F., Prince, J. L., Stone, M., Reese, T. G., Atassi, N., Wedeen, V. J., El Fakhri, G. & Woo, J., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057411

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diffusion Magnetic Resonance Imaging
tongue
Amyotrophic Lateral Sclerosis
Tongue
Magnetic resonance imaging

Unpaired brain mr-to-ct synthesis using a structure-constrained cyclegan

Yang, H., Sun, J., Carass, A., Zhao, C., Lee, J., Xu, Z. & Prince, J. L., Jan 1 2018, Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support - 4th International Workshop, DLMIA 2018 and 8th International Workshop, ML-CDS 2018 Held in Conjunction with MICCAI 2018. Maier-Hein, L., Syeda-Mahmood, T., Taylor, Z., Lu, Z., Stoyanov, D., Madabhushi, A., Tavares, J. M. R. S., Nascimento, J. C., Moradi, M., Martel, A., Papa, J. P., Conjeti, S., Belagiannis, V., Greenspan, H., Carneiro, G. & Bradley, A. (eds.). Springer Verlag, p. 174-182 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11045 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brain
Synthesis
Medical imaging
Paired Data
CT Image
2017

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging

Xing, F., Prince, J. L., Stone, M., Wedeen, V. J., El Fakhri, G. & Woo, J., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cine Magnetic Resonance Imaging
tongue
Atlases
Magnetic resonance
Tongue

A supervoxel based random forest synthesis framework for bidirectional MR/CT synthesis

Zhao, C., Carass, A., Lee, J., Jog, A. & Prince, J. L., Jan 1 2017, Simulation and Synthesis in Medical Imaging - 2nd International Workshop, SASHIMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, p. 33-40 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10557 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic Resonance
Random Forest
Computed Tomography
Magnetic resonance
Tomography

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dura Mater
Magnetic resonance
magnetic resonance
Brain
Spinal Cord

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J., 2017, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138. 1013813

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
scanners
Software
tomography

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Labels
templates
Labeling
marking

Falx cerebri segmentation via multi-atlas boundary fusion

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L., Jan 1 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M., Duchesne, S., Franz, A., Jannin, P., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 92-99 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlas
Magnetic resonance
Magnetic Resonance Image
Brain
Fusion

Fiber orientation estimation guided by a deep network

Ye, C. & Prince, J. L., Jan 1 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M., Duchesne, S., Franz, A., Jannin, P., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 575-583 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Orientation
Fiber reinforced materials
Glossaries
Magnetic Resonance Imaging
Magnetic resonance

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients

Lang, A., Carass, A., Bittner, A. K., Ying, H. S. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371M

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Retinitis Pigmentosa
Optical tomography
Optical Coherence Tomography
pathology
Pathology

Incompressible phase registration for motion estimation from tagged magnetic resonance images

Xing, F., Woo, J., Gomez, A., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., 2017, Reconstruction, Segmentation, and Analysis of Medical Images - 1st International Workshops, RAMBO 2016 and HVSMR 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Springer Verlag, Vol. 10129 LNCS. p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10129 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic Resonance Image
Motion Estimation
Motion estimation
Magnetic resonance
Registration

Longitudinal analysis of mouse SDOCT volumes

Antony, B. J., Carass, A., Lang, A., Kim, B. J., Zack, D. J. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
mice
tomography
Animals

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning

Lee, J., Carass, A., Jog, A., Zhao, C. & Prince, J. L., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331I

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Radiotherapy
Magnetic resonance imaging
planning
radiation therapy

Simulation and synthesis in medical imaging: Second international workshop, SASHIMI 2017 held in conjunction with MICCAI 2017 Québec city, QC, Canada, September 10, 2017 proceedings

Tsaftaris, S. A., Gooya, A., Frangi, A. F. & Prince, J. L., Jan 1 2017, Simulation and Synthesis in Medical Imaging - 2nd International Workshop, SASHIMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Gooya, A., Frangi, A. F., Tsaftaris, S. A. & Prince, J. L. (eds.). Springer Verlag, (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10557 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical Imaging
Medical imaging
Synthesis
Simulation

Test suite for image-based motion estimation of the brain and tongue

Ramsey, J., Prince, J. L. & Gomez, A., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

tongue
Motion estimation
Tongue
brain
Brain

Towards topological correct segmentation of macular OCT from cascaded FCNs

He, Y., Carass, A., Yun, Y., Zhao, C., Jedynak, B. M., Solomon, S., Saidha, S., Calabresi, P. & Prince, J. L., 2017, Fetal, Infant and Ophthalmic Medical Image Analysis - International Workshop, FIFI 2017 and 4th International Workshop, OMIA 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10554 LNCS. p. 202-209 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10554 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical Coherence Tomography
Optical tomography
Retina
Segmentation
Topology

Whole brain parcellation with pathology: Validation on ventriculomegaly patients

Carass, A., Shao, M., Li, X., Dewey, B. E., Blitz, A. M., Roy, S., Pham, D. L., Prince, J. L. & Ellingsen, L. M., 2017, Patch-Based Techniques in Medical Imaging - 3rd International Workshop, Patch-MI 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10530 LNCS. p. 20-28 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10530 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pathology
Brain
Dementia
Segmentation
Atlas

Whole brain segmentation and labeling from CT using synthetic MR images

Zhao, C., Carass, A., Lee, J., He, Y. & Prince, J. L., Jan 1 2017, Machine Learning in Medical Imaging - 8th International Workshop, MLMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, p. 291-298 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10541 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computed Tomography
Labeling
Tomography
Brain
Segmentation
2016

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction

Abulnaga, S. M., Yang, Z., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Computer-Aided Diagnosis. SPIE, Vol. 9785. 97852P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cerebellar Diseases
Cerebellum
Atrophy
cerebellum
atrophy

Combined registration and motion correction of longitudinal retinal OCT data

Lang, A., Carass, A., Al-Louzi, O., Bhargava, P., Solomon, S., Calabresi, P. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840X

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
tomography
Thickness measurement
Eye movements

Combining multi-atlas segmentation with brain surface estimation

Huo, Y., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
brain
Brain
Surface reconstruction
Labels

CT and MRI fusion for postimplant prostate brachytherapy evaluation

Dehghan, E., Le, Y., Lee, J., Song, D. Y., Fichtinger, G. & Prince, J. L., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June. p. 625-628 4 p. 7493345

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brachytherapy
Magnetic resonance imaging
Seed
Prostate
Fusion reactions

Effects of spatial resolution on image registration

Zhao, C., Carass, A., Jog, A. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840Y

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spatial Analysis
Image registration
spatial resolution
random noise
estimates

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L., 2016, Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none. p. 87-96 10 p. (Mathematics and Visualization; vol. none).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Orientation
Fiber reinforced materials
Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques

Improving cerebellar segmentation with statistical fusion

Plassard, A. J., Yang, Z., Prince, J. L., Claassen, D. O. & Landman, B. A., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97842R

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Iterative methods
Fusion reactions
fusion
Imaging techniques
Post and Core Technique

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S., Calabresi, P. & Prince, J. L., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June. p. 197-200 4 p. 7493243

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
Magnetic resonance imaging
Retina
Imaging techniques

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization

Yang, Z., Abulnaga, S. M., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

ataxia
atrophy
Cerebellar Ataxia
landmarks
Ataxia

MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery

Reaungamornrat, S., De Silva, T., Uneri, A., Wolinsky, J. P., Khanna, A. J., Kleinszig, G., Vogt, S., Prince, J. L. & Siewerdsen, J. H., 2016, Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 9786. 97860H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Surgery
spine
Image registration
surgery
Surgery

Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles

Li, K., Ye, C., Yang, Z., Carass, A., Ying, S. H. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97841H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

assurance
Quality assurance
Diffusion tensor imaging
Logistics
Classifiers