1982 …2020

Research output per year

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Research Output

2020

Alterations in the retinal vasculature occur in multiple sclerosis and exhibit novel correlations with disability and visual function measures

Murphy, O. C., Kwakyi, O., Iftikhar, M., Zafar, S., Lambe, J., Pellegrini, N., Sotirchos, E. S., Gonzalez-Caldito, N., Ogbuokiri, E., Filippatou, A., Risher, H., Cowley, N., Feldman, S., Fioravante, N., Frohman, E. M., Frohman, T. C., Balcer, L. J., Prince, J. L., Channa, R., Calabresi, P. A. & 1 others, Saidha, S., Jun 1 2020, In : Multiple Sclerosis Journal. 26, 7, p. 815-828 14 p.

Research output: Contribution to journalArticle

Analysis of fiber strain in the human tongue during speech

Gomez, A. D., Stone, M. L., Woo, J., Xing, F. & Prince, J. L., Jun 10 2020, In : Computer Methods in Biomechanics and Biomedical Engineering. 23, 8, p. 312-322 11 p.

Research output: Contribution to journalArticle

Aquaporin-4 IgG seropositivity is associated with worse visual outcomes after optic neuritis than MOG-IgG seropositivity and multiple sclerosis, independent of macular ganglion cell layer thinning

Sotirchos, E. S., Filippatou, A., Fitzgerald, K. C., Salama, S., Pardo, S., Wang, J., Ogbuokiri, E., Cowley, N. J., Pellegrini, N., Murphy, O. C., Mealy, M. A., Prince, J. L., Levy, M., Calabresi, P. A. & Saidha, S., Oct 1 2020, In : Multiple Sclerosis Journal. 26, 11, p. 1360-1371 12 p.

Research output: Contribution to journalArticle

Association of body mass index with longitudinal rates of retinal atrophy in multiple sclerosis

Filippatou, A. G., Lambe, J., Sotirchos, E. S., Fitzgerald, K. C., Aston, A., Murphy, O. C., Pellegrini, N., Fioravante, N., Risher, H., Ogbuokiri, E., Kwakyi, O., Toliver, B., Davis, S., Luciano, N., Crainiceanu, C., Prince, J. L., Mowry, E. M., Calabresi, P. A. & Saidha, S., Jun 1 2020, In : Multiple Sclerosis Journal. 26, 7, p. 843-854 12 p.

Research output: Contribution to journalArticle

Automatic cerebellum anatomical parcellation using U-Net with locally constrained optimization

Han, S., Carass, A., He, Y. & Prince, J. L., Sep 2020, In : NeuroImage. 218, 116819.

Research output: Contribution to journalArticle

Open Access

Effect of disease-modifying therapies on subcortical gray matter atrophy in multiple sclerosis

Sotirchos, E. S., Gonzalez-Caldito, N., Dewey, B. E., Fitzgerald, K. C., Glaister, J., Filippatou, A., Ogbuokiri, E., Feldman, S., Kwakyi, O., Risher, H., Crainiceanu, C., Pham, D. L., Van Zijl, P. C., Mowry, E. M., Reich, D. S., Prince, J. L., Calabresi, P. A. & Saidha, S., Mar 1 2020, In : Multiple Sclerosis Journal. 26, 3, p. 312-321 10 p.

Research output: Contribution to journalArticle

Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis

Carass, A., Roy, S., Gherman, A., Reinhold, J. C., Jesson, A., Arbel, T., Maier, O., Handels, H., Ghafoorian, M., Platel, B., Birenbaum, A., Greenspan, H., Pham, D. L., Crainiceanu, C. M., Calabresi, P. A., Prince, J. L., Roncal, W. R. G., Shinohara, R. T. & Oguz, I., Dec 1 2020, In : Scientific reports. 10, 1, 8242.

Research output: Contribution to journalArticle

Open Access

Five-year longitudinal changes in quantitative spinal cord MRI in multiple sclerosis

Oh, J., Chen, M., Cybulsky, K., Suthiphosuwan, S., Seyman, E., Dewey, B., Diener-West, M., van Zijl, P., Prince, J., Reich, D. S. & Calabresi, P. A., 2020, (Accepted/In press) In : Multiple Sclerosis Journal.

Research output: Contribution to journalArticle

Longitudinal analysis of regional cerebellum volumes during normal aging

Han, S., An, Y., Carass, A., Prince, J. L. & Resnick, S. M., Oct 15 2020, In : NeuroImage. 220, 117062.

Research output: Contribution to journalArticle

Open Access

Progressive Multiple Sclerosis Is Associated with Faster and Specific Retinal Layer Atrophy

International Multiple Sclerosis Visual System (IMSVISUAL) Consortium, Jun 1 2020, In : Annals of neurology. 87, 6, p. 885-896 12 p.

Research output: Contribution to journalArticle

Retinal pathology occurs in stiff-person syndrome

Lambe, J., Rothman, A., Prince, J., Saidha, S., Calabresi, P. A. & Newsome, S. D., May 19 2020, In : Neurology. 94, 20, p. e2126-e2131

Research output: Contribution to journalArticle

Validating Uncertainty in Medical Image Translation

Reinhold, J. C., He, Y., Han, S., Chen, Y., Gao, D., Lee, J., Prince, J. L. & Carass, A., Apr 2020, ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 95-98 4 p. 9098543. (Proceedings - International Symposium on Biomedical Imaging; vol. 2020-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

3-D Measurements of Acceleration-Induced Brain Deformation via Harmonic Phase Analysis and Finite-Element Models

Gomez, A. D., Knutsen, A. K., Xing, F., Lu, Y. C., Chan, D., Pham, D. L., Bayly, P. & Prince, J. L., May 2019, In : IEEE Transactions on Biomedical Engineering. 66, 5, p. 1456-1467 12 p., 8485774.

Research output: Contribution to journalArticle

A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium

Lu, Y. C., Daphalapurkar, N. P., Knutsen, A. K., Glaister, J., Pham, D. L., Butman, J. A., Prince, J. L., Bayly, P. V. & Ramesh, K. T., Sep 15 2019, In : Annals of biomedical engineering. 47, 9, p. 1923-1940 18 p.

Research output: Contribution to journalArticle

Applications of a deep learning method for anti-aliasing and super-resolution in MRI

Zhao, C., Shao, M., Carass, A., Li, H., Dewey, B. E., Ellingsen, L. M., Woo, J., Guttman, M. A., Blitz, A. M., Stone, M., Calabresi, P. A., Halperin, H. & Prince, J. L., Dec 2019, In : Magnetic Resonance Imaging. 64, p. 132-141 10 p.

Research output: Contribution to journalArticle

A sparse non-negative matrix factorization framework for identifying functional units of tongue behavior from MRI

Woo, J., Prince, J. L., Stone, M., Xing, F., Gomez, A. D., Green, J. R., Hartnick, C. J., Brady, T. J., Reese, T. G., Wedeen, V. J. & El Fakhri, G., Mar 2019, In : IEEE transactions on medical imaging. 38, 3, p. 730-740 11 p., 8467354.

Research output: Contribution to journalArticle

Atlas-based tongue muscle correlation analysis from tagged and high- resolution magnetic resonance imaging

Xing, F., Stone, M., Goldsmith, T., Prince, J. L., Fakhri, G. E. & Woo, J., Jul 2019, In : Journal of Speech, Language, and Hearing Research. 62, 7, p. 2258-2269 12 p.

Research output: Contribution to journalArticle

Automatic quality control using hierarchical shape analysis for cerebellum parcellation

Zuo, L., Han, S., Carass, A., Ying, S. H., Onyike, C. U. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109490J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brain ventricle parcellation using a deep neural network: Application to patients with ventriculomegaly

Shao, M., Han, S., Carass, A., Li, X., Blitz, A. M., Shin, J., Prince, J. L. & Ellingsen, L. M., 2019, In : NeuroImage: Clinical. 23, 101871.

Research output: Contribution to journalArticle

Open Access

Cerebellum parcellation with convolutional neural networks

Han, S., He, Y., Carass, A., Ying, S. H. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109490K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DeepHarmony: A deep learning approach to contrast harmonization across scanner changes

Dewey, B. E., Zhao, C., Reinhold, J. C., Carass, A., Fitzgerald, K. C., Sotirchos, E. S., Saidha, S., Oh, J., Pham, D. L., Calabresi, P. A., van Zijl, P. C. M. & Prince, J. L., Dec 2019, In : Magnetic Resonance Imaging. 64, p. 160-170 11 p.

Research output: Contribution to journalArticle

Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT

He, Y., Carass, A., Liu, Y., Jedynak, B. M., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., Oct 1 2019, In : Biomedical Optics Express. 10, 10, p. 5042-5058 17 p.

Research output: Contribution to journalArticle

Differentiating post-cancer from healthy tongue muscle coordination patterns during speech using deep learning

Woo, J., Xing, F., Prince, J. L., Stone, M., Green, J. R., Goldsmith, T., Reese, T. G., Wedeen, V. J. & El Fakhri, G., May 1 2019, In : Journal of the Acoustical Society of America. 145, 5, p. EL423-EL429

Research output: Contribution to journalArticle

Open Access

Evaluating the impact of intensity normalization on MR image synthesis

Reinhold, J. C., Dewey, B. E., Carass, A. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109493H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fully convolutional boundary regression for retina OCT segmentation

He, Y., Carass, A., Liu, Y., Jedynak, B. M., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 120-128 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11764 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hierarchical Parcellation of the Cerebellum

Han, S., Carass, A. & Prince, J. L., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 484-491 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11766 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image synthesis and superresolution in medical imaging

Prince, J. L., Carass, A., Zhao, C., Dewey, B. E., Roy, S. & Pham, D., Jan 1 2019, Handbook of Medical Image Computing and Computer Assisted Intervention. Elsevier, p. 1-24 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

ISMORE: An iterative self super-resolution algorithm

Zhao, C., Son, S., Kim, Y. & Prince, J. L., Jan 1 2019, Simulation and Synthesis in Medical Imaging - 4th International Workshop, SASHIMI 2019, Held in Conjunction with MICCAI 2019, Proceedings. Burgos, N., Gooya, A. & Svoboda, D. (eds.). Springer, p. 130-139 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11827 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Large-scale parcellation of the ventricular system using convolutional neural networks

Atlason, H. E., Shao, M., Robertsson, V., Sigurdsson, S., Gudnason, V., Prince, J. L. & Ellingsen, L. M., Jan 1 2019, Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, 109530N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10953).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Layer boundary evolution method for macular OCT layer segmentation

Liu, Y., Carass, A., He, Y., Antony, B. J., Filippatou, A., Saidha, S., Solomon, S., Calabresi, P. & Prince, J. L., Mar 1 2019, In : Biomedical Optics Express. 10, 3, p. 1064-1080 17 p., 349227.

Research output: Contribution to journalArticle

Parallel deep neural networks for endoscopic oct image segmentation

Li, D., Wu, J., He, Y., Yao, X., Yuan, W., Chen, D., Park, H. C., Yu, S., Prince, J. L. & Li, X., Mar 1 2019, In : Biomedical Optics Express. 10, 3, p. 1126-1135 10 p., #349139.

Research output: Contribution to journalArticle

Phase Image Texture Analysis for Motion Detection in Diffusion MRI (PITA-MDD)

Elsaid, N. M. H., Prince, J. L., Roys, S., Gullapalli, R. P. & Zhuo, J., Oct 2019, In : Magnetic Resonance Imaging. 62, p. 228-241 14 p.

Research output: Contribution to journalArticle

Projection artifact suppression for inner retina in oct angiography

Liu, Y., Carass, A., Filippatou, A., He, Y., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., Apr 2019, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 592-596 5 p. 8759466. (Proceedings - International Symposium on Biomedical Imaging; vol. 2019-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Quantifying tongue tip shape in apical and laminal /s/: Contributions of palate shape

Stone, M., Gomez, A. D., Zhuo, J., Tchouaga, A. L. & Prince, J. L., Sep 2019, In : Journal of Speech, Language, and Hearing Research. 62, 9, p. 3149-3159 11 p.

Research output: Contribution to journalArticle

Quantitative vibratory sensation measurement is related to sensory cortical thickness in MS

Fritz, N. E., Eloyan, A., Glaister, J., Dewey, B. E., Al-Louzi, O., Costello, M. G., Chen, M., Prince, J. L., Calabresi, P. A. & Zackowski, K. M., Mar 2019, In : Annals of Clinical and Translational Neurology. 6, 3, p. 586-595 10 p.

Research output: Contribution to journalArticle

Open Access

Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images

Woo, J., Xing, F., Stone, M., Green, J., Reese, T. G., Brady, T. J., Wedeen, V. J., Prince, J. L. & El Fakhri, G., Jul 4 2019, In : Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. 7, 4, p. 361-373 13 p.

Research output: Contribution to journalArticle

Spinal cord and infratentorial lesions in radiologically isolated syndrome are associated with decreased retinal ganglion cell/inner plexiform layer thickness

Filippatou, A., Shoemaker, T., Esch, M., Qutab, M., Gonzalez-Caldito, N., Prince, J. L., Mowry, E. M., Calabresi, P. A., Saidha, S. & Sotirchos, E. S., Dec 1 2019, In : Multiple Sclerosis Journal. 25, 14, p. 1878-1887 10 p.

Research output: Contribution to journalArticle

2018

2D Modeling and Correction of Fan-Beam Scan Geometry in OCT

Chen, M., Gee, J. C., Prince, J. L. & Aguirre, G. K., Jan 1 2018, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Bogunovic, H., Snead, D., Garvin, M. K., Chen, X. J., Ciompi, F., Xu, Y., Maier-Hein, L., Veta, M., Trucco, E., Stoyanov, D., Rajpoot, N., van der Laak, J., Martel, A. & McKenna, S. (eds.). Springer Verlag, p. 328-335 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11039 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A deep learning based anti-aliasing self super-resolution algorithm for MRI

Zhao, C., Carass, A., Dewey, B. E., Woo, J., Oh, J., Calabresi, P. A., Reich, D. S., Sati, P., Pham, D. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Schnabel, J. A., Davatzikos, C., Alberola-López, C., Fichtinger, G. & Frangi, A. F. (eds.). Springer Verlag, p. 100-108 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans

Gonzalez Caldito, N., Antony, B., He, Y., Lang, A., Nguyen, J., Rothman, A., Ogbuokiri, E., Avornu, A., Balcer, L., Frohman, E., Frohman, T. C., Bhargava, P., Prince, J., Calabresi, P. A. & Saidha, S., Mar 4 2018, In : Current Eye Research. 43, 3, p. 415-423 9 p.

Research output: Contribution to journalArticle

A novel filtering approach for 3D harmonic phase analysis of tagged MRI

Wang, X., Stone, M. L., Prince, J. L. & Gomez, A. D., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 1057414. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10574).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlas of acceleration-induced brain deformation from measurements in vivo

Gomez, A. D., Knutsen, A., Chan, D., Lu, Y. C., Pham, D. L., Bayly, P. & Prince, J. L., May 14 2018, Computational Biomechanics for Medicine: Measurements, Models, and Predictions. Springer International Publishing, p. 3-14 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation

Zuo, L., Carass, A., Han, S. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 10578. 105780D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brain and retinal atrophy in African-Americans versus Caucasian-Americans with multiple sclerosis: A longitudinal study

Caldito, N. G., Saidha, S., Sotirchos, E. S., Dewey, B. E., Cowley, N. J., Glaister, J., Fitzgerald, K. C., Al-Louzi, O., Nguyen, J., Rothman, A., Ogbuokiri, E., Fioravante, N., Feldman, S., Kwakyi, O., Risher, H., Kimbrough, D., Frohman, T. C., Frohman, E., Balcer, L., Crainiceanu, C. & 7 others, Van Zijl, P. C. M., Mowry, E. M., Reich, D. S., Oh, J., Pham, D. L., Prince, J. & Calabresi, P. A., Nov 1 2018, In : Brain. 141, 11, p. 3115-3129 15 p.

Research output: Contribution to journalArticle

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images

Carass, A., Cuzzocreo, J. L., Han, S., Hernandez-Castillo, C. R., Rasser, P. E., Ganz, M., Beliveau, V., Dolz, J., Ben Ayed, I., Desrosiers, C., Thyreau, B., Romero, J. E., Coupé, P., Manjón, J. V., Fonov, V. S., Collins, D. L., Ying, S. H., Onyike, C. U., Crocetti, D., Landman, B. A. & 3 others, Mostofsky, S. H., Thompson, P. M. & Prince, J. L., Dec 2018, In : NeuroImage. 183, p. 150-172 23 p.

Research output: Contribution to journalArticle

Cross-modality image synthesis from unpaired data using cyclegan: Effects of gradient consistency loss and training data size

Hiasa, Y., Otake, Y., Takao, M., Matsuoka, T., Takashima, K., Carass, A., Prince, J. L., Sugano, N. & Sato, Y., 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 31-41 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deep harmonization of inconsistent mr data for consistent volume segmentation

Dewey, B. E., Zhao, C., Carass, A., Oh, J., Calabresi, P., Van Zijl, P. C. & Prince, J. L., Jan 1 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 20-30 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deformable model reconstruction of the subarachnoid space

Glaister, J., Shao, M., Li, X., Carass, A., Roy, S., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 1057431. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10574).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dice overlap measures for objects of unknown number: Application to lesion segmentation

Oguz, I., Carass, A., Pham, D. L., Roy, S., Subbana, N., Calabresi, P. A., Yushkevich, P. A., Shinohara, R. T. & Prince, J. L., 2018, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 3rd International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Revised Selected Papers. Menze, B., Crimi, A., Kuijf, H., Reyes, M. & Bakas, S. (eds.). Springer Verlag, p. 3-14 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10670 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution