Fernando J Pineda

Associate Professor

1987 …2017
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Research Output 1987 2017

  • 23 Article
  • 9 Conference contribution
2017

Connecting mitochondrial dynamics and life-or-death events via Bcl-2 family proteins

Aouacheria, A., Baghdiguian, S., Lamb, H. M., Huska, J. D., Pineda, F. J. & Hardwick, J. M., Apr 3 2017, (Accepted/In press) In : Neurochemistry International.

Research output: Contribution to journalArticle

Mitochondrial Dynamics
Proteins
Mitochondria
Cell Death
Autophagy
2016

Murine norovirus (MNV-1) exposure in vitro to the purine nucleoside analog Ribavirin increases quasispecies diversity

Julian, T. R., Baugher, J. D., Rippinger, C. M., Pinekenstein, R., Kolawole, A. O., Mehoke, T. S., Wobus, C. E., Feldman, A. B., Pineda, F. J. & Schwab, K., Jan 4 2016, In : Virus Research. 211, p. 165-173 9 p.

Research output: Contribution to journalArticle

Purine Nucleosides
Norovirus
Ribavirin
Antiviral Agents
RNA Virus Infections
2013

Genome-wide consequences of deleting any single gene

Teng, X., Dayhoff-Brannigan, M., Cheng, W. C., Gilbert, C., Sing, C., Diny, N., Wheelan, S., Dunham, M., Boeke, J., Pineda, F. J. & Hardwick, J. M., Nov 21 2013, In : Molecular Cell. 52, 4, p. 485-494 10 p.

Research output: Contribution to journalArticle

Genome
Gene Knockout Techniques
Mutation
Genes
Yeasts
2011

Bcl-x L regulates mitochondrial energetics by stabilizing the inner membrane potential

Chen, Y. B., Aon, M. A., Hsu, Y. T., Soane, L., Teng, X., McCaffery, J. M., Cheng, W. C., Qi, B., Li, H., Alavian, K. N., Dayhoff-Brannigan, M., Zou, S., Pineda, F. J., O'Rourke, B., Ko, Y. H., Pedersen, P. L., Kaczmarek, L. K., Jonas, E. A. & Hardwick, J. M., Oct 17 2011, In : Journal of Cell Biology. 195, 2, p. 263-276 14 p.

Research output: Contribution to journalArticle

Mitochondrial Membranes
Membrane Potentials
Mitochondrial Membrane Potential
Mitochondrial Proton-Translocating ATPases
Ions

Cooperation between referees and authors increases Peer review accuracy

Leek, J. T., Taub, M. A. & Pineda, F. J., Nov 9 2011, In : PLoS One. 6, 11, e26895.

Research output: Contribution to journalArticle

Peer Review
peers
cooperatives
Organized Financing
risk reduction

Gene-dependent cell death in yeast

Teng, X., Cheng, W. C., Qi, B., Yu, T. X., Ramachandran, K., Boersma, M. D., Hattier, T., Lehmann, P. V., Pineda, F. J. & Hardwick, J. M., Aug 2011, In : Cell Death and Disease. 2, 8, e188.

Research output: Contribution to journalArticle

Cell Death
Yeasts
Genes
Hot Temperature
Gene Knockout Techniques
2010

Frequency of multiple blood meals taken in a single gonotrophic cycle by Anopheles arabiensis mosquitoes in Macha, Zambia

Norris, L. C., Fornadel, C. M., Hung, W. C., Pineda, F. J. & Norris, D., Jul 2010, In : American Journal of Tropical Medicine and Hygiene. 83, 1, p. 33-37 5 p.

Research output: Contribution to journalArticle

Zambia
Anopheles
Culicidae
Meals
Alleles
2009

Bcl-x L increases mitochondrial fission, fusion, and biomass in neurons

Berman, S. B., Chen, Y. B., Qi, B., McCaffery, J. M., Rucker, E. B., Goebbels, S., Nave, K. A., Arnold, B. A., Jonas, E. A., Pineda, F. J. & Hardwick, J. M., Mar 9 2009, In : Journal of Cell Biology. 184, 5, p. 707-719 13 p.

Research output: Contribution to journalArticle

Mitochondrial Dynamics
Organelles
Biomass
Cell Death
Neurons

Erratum to "Kinetic modeling of Toxoplasma gondii invasion" [J. Theor. Biol. 249 (2007) 817-825] (DOI: 10.1016/j.jtbi.2007.09.008)

Kafsack, B. F. C., Carruthers, V. B. & Pineda, F. J., Oct 21 2009, In : Journal of Theoretical Biology. 260, 4, p. 598 1 p.

Research output: Contribution to journalArticle

Kinetics
2008

Mitochondrial fission and fusion dynamics: The long and short of it

Berman, S. B., Pineda, F. J. & Hardwick, J. M., Jul 2008, In : Cell Death and Differentiation. 15, 7, p. 1147-1152 6 p.

Research output: Contribution to journalArticle

Mitochondrial Dynamics
Organelles
Mitochondria
Maintenance
Observation
air
mice
temperature
animal transport
rodents
2007

Kinetic modeling of Toxoplasma gondii invasion

Kafsack, B. F. C., Carruthers, V. B. & Pineda, F. J., Dec 21 2007, In : Journal of Theoretical Biology. 249, 4, p. 817-825 9 p.

Research output: Contribution to journalArticle

Invasion
Toxoplasma
Toxoplasma gondii
Parasites
Kinetics
2006

Mitochondrial factors with dual roles in death and survival

Cheng, W. C., Berman, S. B., Ivanovska, I., Jonas, E. A., Lee, S. J., Chen, Y., Kaczmarek, L. K., Pineda, F. J. & Hardwick, J. M., Aug 7 2006, In : Oncogene. 25, 34, p. 4697-4705 9 p.

Research output: Contribution to journalArticle

Cell Death
Caspases
Mitochondrial Dynamics
Mitochondrial Proteins
Mammals
2004

Molecular complexity of sexual development and gene regulation in Plasmodium falciparum

Kumar, N., Cha, G., Pineda, F. J., Maciel, J., Haddad, D., Bhattacharyya, M. & Nagayasu, E., Dec 2004, In : International Journal for Parasitology. 34, 13-14, p. 1451-1458 8 p.

Research output: Contribution to journalArticle

Sexual Development
Plasmodium falciparum
Parasites
Genes
Genome
2003

A statistical model of proteolytic digestion

Wang, I. J., Diehl, C. P. & Pineda, F. J., 2003, Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003. Institute of Electrical and Electronics Engineers Inc., p. 506-508 3 p. 1227390

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteins
Amino acids
Enzymes
Stochastic models
Statistical Models

Microorganism identification by matrix-assisted laser/dissorption ionization mass spectrometry and model-derived ribosomal protein biomarkers

Pineda, F. J., Antoine, M. D., Demirev, P. A., Feldman, A. B., Jackman, J., Longenecker, M. & Lin, J. S., Aug 1 2003, In : Analytical Chemistry. 75, 15, p. 3817-3822 6 p.

Research output: Contribution to journalArticle

Ribosomal Proteins
Biomarkers
Microorganisms
Ionization
Mass spectrometry

Path Planning for Mine Countermeasures

Resch, C., Piatko, C., Pineda, F. J., Pistole, J. & Wang, I. J., 2003, Proceedings of SPIE - The International Society for Optical Engineering. Harmon, R. S., Holloway Jr., J. H. & Broach, J. T. (eds.). 2 ed. Vol. 5089. p. 1279-1286 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

trajectory planning
countermeasures
Motion planning
Navigation
navigation
2002

A fully-automated peak extraction and baseline estimation method for high-throughput MALDI-TOF-MS-based detection of biological agents

Lin, J., Bryden, W., Pineda, F. J., Resch, C., Saksena, A. & Feldman, A., 2002, Proceedings 50th ASMS Conference on Mass Spectrometry and Allied Topics. p. 709-710 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biological Factors
Throughput
Experiments

Towards model-based rapid microorganism identification for MALDI-TOF-MS

Pineda, F. J., Antoine, M., Demirev, P., Feldman, A., Jackman, J. & Lin, J., 2002, Proceedings 50th ASMS Conference on Mass Spectrometry and Allied Topics. p. 181-182 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Microorganisms
Ionization
Mass spectrometry
Identification (control systems)
Lasers
2001
Biomarkers
Proteome
Bioinformatics
Microorganisms
Mass spectrometry
2000

Testing the significance of microorganism identification by mass spectrometry and proteome database search

Pineda, F. J., Lin, J. S., Fenselau, C. & Demirev, P. A., Aug 15 2000, In : Analytical Chemistry. 72, 16, p. 3739-3744 6 p.

Research output: Contribution to journalArticle

Proteome
Microorganisms
Mass spectrometry
Testing
Bacilli
1999

Automatic recognition and assignment of missile pieces in clutter

Resch, C., Pineda, F. J. & Wang, I. J., 1999, Proceedings of the International Joint Conference on Neural Networks. IEEE, Vol. 5. p. 3177-3181 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Reentry
Missiles
Time delay
Neural networks
Debris

Computer-assisted interpretation of mass spectra

Hayek, C. S., Pineda, F. J., Doss, O. W. & Lin, J. S., 1999, In : Johns Hopkins APL Technical Digest (Applied Physics Laboratory). 20, 3, p. 363-370 8 p.

Research output: Contribution to journalArticle

mass spectra
signatures
Mass spectrometers
mass spectrometers
Vector spaces

Optimizing correlation algorithms for hardware-based transient classification

Edwards, R. T., Cauwenberghs, G. & Pineda, F. J., 1999, Advances in Neural Information Processing Systems. Neural information processing systems foundation, p. 678-684 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hardware
Acoustics
Processing
1997

Bang, click, thud, or whack?

Pineda, F. J., Cauwenberghs, G., Edwards, R. T., Ryals, K. T. & Steigerwald, D. G., Apr 1997, In : Johns Hopkins APL Technical Digest (Applied Physics Laboratory). 18, 2, p. 244-252 9 p.

Research output: Contribution to journalArticle

Acoustics
analogs
Analog storage
Cellular telephones
acoustics

Bangs, clicks, snaps, thuds and whacks: An architecture for acoustic transient processing

Pineda, F. J., Cauwenberghs, G. & Edwards, R. T., 1997, Advances in Neural Information Processing Systems. Neural information processing systems foundation, p. 734-740 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Acoustics
Processing
Analog storage
Template matching
Multiplexing

Mean-Field Theory for Batched TD(λ)

Pineda, F. J., Oct 1 1997, In : Neural Computation. 9, 7, p. 1403-1419 17 p.

Research output: Contribution to journalArticle

Markov Chains
Mean field theory
Markov processes
Observation
Learning

Mixed-signal correlator for acoustic transient classification

Edwards, R. T., Cauwenberghs, G. & Pineda, F. J., 1997, Proceedings - IEEE International Symposium on Circuits and Systems. Anon (ed.). IEEE, Vol. 1. p. 621-624 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Correlators
Analog circuits
Pattern recognition
Acoustics
1994

Analog neuromorphic computation: an application to compression

Pineda, F. J. & Andreou, A. G., Jan 1994, In : Johns Hopkins APL Technical Digest (Applied Physics Laboratory). 15, 1, p. 82-85 4 p.

Research output: Contribution to journalArticle

analogs
electrical engineering
intelligence
pressure reduction
engines
1988

Dynamics and architecture for neural computation

Pineda, F. J., 1988, In : Journal of Complexity. 4, 3, p. 216-245 30 p.

Research output: Contribution to journalArticle

Nonlinear dynamical systems
Backpropagation
Nonlinear Dynamical Systems
Back Propagation
Pattern recognition
1987

GENERALIZATION OF BACKPROPAGATION TO RECURRENT AND HIGH-ORDER NETWORKS.

Pineda, F. J., 1987, Unknown Host Publication Title. IEEE, p. 15 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Backpropagation
Differential equations
Backpropagation algorithms
Feedback

Generalization of back-propagation to recurrent neural networks

Pineda, F. J., 1987, In : Physical Review Letters. 59, 19, p. 2229-2232 4 p.

Research output: Contribution to journalArticle

bears
neurons