Daria Gaykalova

Assistant Professor

20062019
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  • 4 Similar Profiles
Neoplasms Medicine & Life Sciences
Nucleosomes Medicine & Life Sciences
Chromatin Medicine & Life Sciences
DNA Methylation Medicine & Life Sciences
Epigenomics Medicine & Life Sciences
Genes Medicine & Life Sciences
Tumors Chemical Compounds
Methylation Medicine & Life Sciences

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Research Output 2006 2019

Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers

Ando, M., Saito, Y., Xu, G., Bui, N. Q., Medetgul-Ernar, K., Pu, M., Fisch, K., Ren, S., Sakai, A., Fukusumi, T., Liu, C., Haft, S., Pang, J., Mark, A., Gaykalova, D., Guo, T., Favorov, A., Yegnasubramanian, S., Fertig, E., Ha, P. & 5 others, Tamayo, P., Yamasoba, T., Ideker, T., Messer, K. & Califano, J. A., Dec 1 2019, In : Nature communications. 10, 1, 2188.

Research output: Contribution to journalArticle

Open Access
chromatin
methylation
Transcription Initiation Site
DNA Methylation
Chromatin

Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer

Flam, E. L., Danilova, L., Kelley, D. Z., Stavrovskaya, E., Guo, T., Considine, M., Qian, J., Califano, J. A., Favorov, A., Fertig, E. J. & Gaykalova, D. A., Dec 1 2019, In : Scientific reports. 9, 1, 15034.

Research output: Contribution to journalArticle

Open Access
Gene Expression
Neoplasms
Chromatin
Genes
DNA Methylation

Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers (Nature Communications, (2019), 10, 1, (2188), 10.1038/s41467-019-09937-w)

Ando, M., Saito, Y., Xu, G., Bui, N. Q., Medetgul-Ernar, K., Pu, M., Fisch, K., Ren, S., Sakai, A., Fukusumi, T., Liu, C., Haft, S., Pang, J., Mark, A., Gaykalova, D., Guo, T., Favorov, A., Yegnasubramanian, S., Fertig, E., Ha, P. & 5 others, Tamayo, P., Yamasoba, T., Ideker, T., Messer, K. & Califano, J. A., Dec 1 2019, In : Nature communications. 10, 1, 2415.

Research output: Contribution to journalComment/debate

Open Access
chromatin
methylation
Transcription Initiation Site
DNA Methylation
medicine

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

Sherman, T. D., Tsukamoto Kagohara, L., Cao, R., Cheng, R., Satriano, M., Considine, M., Krigsfeld, G., Ranaweera, R., Tang, Y., Jablonski, S. A., Stein-O'Brien, G., Gaykalova, D., Weiner, L. M., Chung, C. H. & Fertig, E., Jun 1 2018, In : PLoS computational biology. 14, 4, p. e1006935

Research output: Contribution to journalArticle

Open Access
Statistical Modeling
Bioinformatics
Gene Expression Data
Gene expression
Mathematical Modeling

Discovery and development of differentially methylated regions in human papillomavirus-related oropharyngeal squamous cell carcinoma

Ren, S., Gaykalova, D., Wang, J., Guo, T., Danilova, L. V., Favorov, A., Fertig, E., Bishop, J., Khan, Z., Flam, E., Wysocki, P. T., DeJong, P., Ando, M., Liu, C., Sakai, A., Fukusumi, T., Haft, S., Sadat, S. & Califano, J. A., Jan 1 2018, (Accepted/In press) In : International Journal of Cancer.

Research output: Contribution to journalArticle

Squamous Cell Carcinoma
Methylation
DNA Methylation
Genome
Atlases