Daria Gaykalova

Assistant Professor

20062018
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Research Output 2006 2018

Epigenetic regulation of gene expression in cancer: Techniques, resources and analysis

Kagohara, L. T., Stein-O'Brien, G. L., Kelley, D., Flam, E., Wick, H. C., Danilova, L. V., Easwaran, H., Favorov, A. V., Qian, J., Gaykalova, D. A. & Fertig, E. J. Jan 1 2018 In : Briefings in Functional Genomics. 17, 1, p. 49-63 15 p.

Research output: Contribution to journalReview article

Gene Expression Regulation
Bioinformatics
Epigenomics
Gene expression
Throughput

HEY1 is expressed independent of NOTCH1 and is associated with poor prognosis in head and neck squamous cell carcinoma

Rettig, E. M., Bishop, J. A., Agrawal, N., Chung, C. H., Sharma, R., Zamuner, F., Li, R. J., Koch, W. M., Califano, J. A., Guo, T., Gaykalova, D. A. & Fakhry, C. Jul 1 2018 In : Oral Oncology. 82, p. 168-175 8 p.

Research output: Contribution to journalArticle

Mutation
Neoplasms
Proportional Hazards Models
Carcinoma, squamous cell of head and neck
Staining and Labeling

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

Stein-O'Brien, G., Kagohara, L. T., Li, S., Thakar, M., Ranaweera, R., Ozawa, H., Cheng, H., Considine, M., Schmitz, S., Favorov, A. V., Danilova, L. V., Califano, J. A., Izumchenko, E., Gaykalova, D. A., Chung, C. H. & Fertig, E. J. May 23 2018 In : Genome Medicine. 10, 1, 37

Research output: Contribution to journalArticle

Epigenomics
DNA Methylation
Molecular Dynamics Simulation
RNA Sequence Analysis
Phenotype

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer

Afsari, B., Guo, T., Considine, M., Florea, L., Kagohara, L. T., Stein-O'Brien, G. L., Kelley, D., Flam, E., Zambo, K. D., Ha, P. K., Geman, D., Ochs, M. F., Califano, J. A., Gaykalova, D. A., Favorov, A. V. & Fertig, E. J. Jun 1 2018 In : Bioinformatics. 34, 11, p. 1859-1867 9 p.

Research output: Contribution to journalArticle

Tumors
Tumor
Cancer
Protein Isoforms
Genes

A novel functional splice variant of AKT3 defined by analysis of alternative splice expression in HPV-positive oropharyngeal cancers

Guo, T., Sakai, A., Afsari, B., Considine, M., Danilova, L., Favorov, A. V., Yegnasubramanian, S., Kelley, D. Z., Flam, E., Ha, P. K., Khan, Z., Wheelan, S. J., Gutkind, J. S., Fertig, E. J., Gaykalova, D. A. & Califano, J. Oct 1 2017 In : Cancer Research. 77, 19, p. 5248-5258 11 p.

Research output: Contribution to journalArticle

Oropharyngeal Neoplasms
Alternative Splicing
Methylation
RNA Sequence Analysis
Squamous Cell Carcinoma