Daria Gaykalova

Assistant Professor

20062018
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  • 8 Similar Profiles
Nucleosomes Medicine & Life Sciences
Neoplasms Medicine & Life Sciences
Genes Medicine & Life Sciences
Epigenomics Medicine & Life Sciences
Head and Neck Neoplasms Medicine & Life Sciences
Chromatin Medicine & Life Sciences
Methylation Medicine & Life Sciences
squamous cell carcinoma Agriculture & Biology

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Research Output 2006 2018

Discovery and development of differentially methylated regions in human papillomavirus-related oropharyngeal squamous cell carcinoma

Ren, S., Gaykalova, D., Wang, J., Guo, T., Danilova, L., Favorov, A., Fertig, E., Bishop, J., Khan, Z., Flam, E., Wysocki, P. T., DeJong, P., Ando, M., Liu, C., Sakai, A., Fukusumi, T., Haft, S., Sadat, S. & Califano, J. A., Jan 1 2018, (Accepted/In press) In : International Journal of Cancer.

Research output: Contribution to journalArticle

Squamous Cell Carcinoma
Methylation
DNA Methylation
Genome
Atlases

Epigenetic regulation of gene expression in cancer: Techniques, resources and analysis

Kagohara, L. T., Stein-O'Brien, G. L., Kelley, D., Flam, E., Wick, H. C., Danilova, L. V., Easwaran, H., Favorov, A. V., Qian, J., Gaykalova, D. A. & Fertig, E. J., Jan 1 2018, In : Briefings in Functional Genomics. 17, 1, p. 49-63 15 p.

Research output: Contribution to journalReview article

Gene Expression Regulation
Bioinformatics
Epigenomics
Gene expression
Throughput

HEY1 is expressed independent of NOTCH1 and is associated with poor prognosis in head and neck squamous cell carcinoma

Rettig, E. M., Bishop, J. A., Agrawal, N., Chung, C. H., Sharma, R., Zamuner, F., Li, R. J., Koch, W. M., Califano, J. A., Guo, T., Gaykalova, D. A. & Fakhry, C., Jul 1 2018, In : Oral Oncology. 82, p. 168-175 8 p.

Research output: Contribution to journalArticle

Mutation
Neoplasms
Proportional Hazards Models
Carcinoma, squamous cell of head and neck
Staining and Labeling

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance

Stein-O'Brien, G., Kagohara, L. T., Li, S., Thakar, M., Ranaweera, R., Ozawa, H., Cheng, H., Considine, M., Schmitz, S., Favorov, A. V., Danilova, L. V., Califano, J. A., Izumchenko, E., Gaykalova, D. A., Chung, C. H. & Fertig, E. J., May 23 2018, In : Genome Medicine. 10, 1, 37

Research output: Contribution to journalArticle

Epigenomics
DNA Methylation
Molecular Dynamics Simulation
RNA Sequence Analysis
Phenotype

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer

Afsari, B., Guo, T., Considine, M., Florea, L., Kagohara, L. T., Stein-O'Brien, G. L., Kelley, D., Flam, E., Zambo, K. D., Ha, P. K., Geman, D., Ochs, M. F., Califano, J. A., Gaykalova, D. A., Favorov, A. V. & Fertig, E. J., Jun 1 2018, In : Bioinformatics. 34, 11, p. 1859-1867 9 p.

Research output: Contribution to journalArticle

Tumors
Tumor
Cancer
Protein Isoforms
Genes