Daria Gaykalova

Assistant Professor

20062019

Research output per year

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Research Output

Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers

Ando, M., Saito, Y., Xu, G., Bui, N. Q., Medetgul-Ernar, K., Pu, M., Fisch, K., Ren, S., Sakai, A., Fukusumi, T., Liu, C., Haft, S., Pang, J., Mark, A., Gaykalova, D., Guo, T., Favorov, A., Yegnasubramanian, S., Fertig, E., Ha, P. & 5 others, Tamayo, P., Yamasoba, T., Ideker, T., Messer, K. & Califano, J. A., Dec 1 2019, In : Nature communications. 10, 1, 2188.

Research output: Contribution to journalArticle

Open Access
  • Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer

    Flam, E. L., Danilova, L., Kelley, D. Z., Stavrovskaya, E., Guo, T., Considine, M., Qian, J., Califano, J. A., Favorov, A., Fertig, E. J. & Gaykalova, D. A., Dec 1 2019, In : Scientific reports. 9, 1, 15034.

    Research output: Contribution to journalArticle

    Open Access
  • Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers (Nature Communications, (2019), 10, 1, (2188), 10.1038/s41467-019-09937-w)

    Ando, M., Saito, Y., Xu, G., Bui, N. Q., Medetgul-Ernar, K., Pu, M., Fisch, K., Ren, S., Sakai, A., Fukusumi, T., Liu, C., Haft, S., Pang, J., Mark, A., Gaykalova, D., Guo, T., Favorov, A., Yegnasubramanian, S., Fertig, E., Ha, P. & 5 others, Tamayo, P., Yamasoba, T., Ideker, T., Messer, K. & Califano, J. A., Dec 1 2019, In : Nature communications. 10, 1, 2415.

    Research output: Contribution to journalComment/debate

    Open Access
  • CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer

    Sherman, T. D., Tsukamoto Kagohara, L., Cao, R., Cheng, R., Satriano, M., Considine, M., Krigsfeld, G., Ranaweera, R., Tang, Y., Jablonski, S. A., Stein-O'Brien, G., Gaykalova, D., Weiner, L. M., Chung, C. H. & Fertig, E., Jun 1 2018, In : PLoS computational biology. 14, 4, p. e1006935

    Research output: Contribution to journalArticle

    Open Access
  • Discovery and development of differentially methylated regions in human papillomavirus-related oropharyngeal squamous cell carcinoma

    Ren, S., Gaykalova, D., Wang, J., Guo, T., Danilova, L. V., Favorov, A., Fertig, E., Bishop, J., Khan, Z., Flam, E., Wysocki, P. T., DeJong, P., Ando, M., Liu, C., Sakai, A., Fukusumi, T., Haft, S., Sadat, S. & Califano, J. A., Jan 1 2018, (Accepted/In press) In : International Journal of Cancer.

    Research output: Contribution to journalArticle