Research output per year
Research output per year
- 1 - 50 out of 362 results
Search results
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2024
Prospective comparison of restriction spectrum imaging and non-invasive biomarkers to predict upgrading on active surveillance prostate biopsy
Eng, S. E., Basasie, B., Lam, A., John Semmes, O., Troyer, D. A., Clarke, G. D., Sunnapwar, A. G., Leach, R. J., Johnson-Pais, T. L., Sokoll, L. J., Chan, D. W., Tosoian, J. J., Siddiqui, J., Chinnaiyan, A. M., Thompson, I. M., Boutros, P. C. & Liss, M. A., Mar 2024, In: Prostate Cancer and Prostatic Diseases. 27, 1, p. 65-72 8 p.Research output: Contribution to journal › Article › peer-review
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2023
Author Correction: Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma (Nature Communications, (2023), 14, 1, (1681), 10.1038/s41467-023-37211-7)
Wu, Y., Terekhanova, N. V., Caravan, W., Naser Al Deen, N., Lal, P., Chen, S., Mo, C. K., Cao, S., Li, Y., Karpova, A., Liu, R., Zhao, Y., Shinkle, A., Strunilin, I., Weimholt, C., Sato, K., Yao, L., Serasanambati, M., Yang, X., Wyczalkowski, M., & 22 others, Dec 2023, In: Nature communications. 14, 1, 2817.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Deep learning integrates histopathology and proteogenomics at a pan-cancer level
Clinical Proteomic Tumor Analysis Consortium, Sep 19 2023, In: Cell Reports Medicine. 4, 9, 101173.Research output: Contribution to journal › Article › peer-review
Open Access -
Development and evaluation of the MiCheck® Prostate test for clinically significant prostate cancer
Shore, N. D., Polikarpov, D. M., Pieczonka, C. M., Henderson, R. J., Bailen, J. L., Saltzstein, D. R., Concepcion, R. S., Beebe-Dimmer, J. L., Ruterbusch, J. J., Levin, R. A., Wissmueller, S., Le, T. H., Gillatt, D. A., Chan, D. W., Deng, N., Siddireddy, J. S., Lu, Y., Campbell, D. H. & Walsh, B. J., Nov 2023, In: Urologic Oncology: Seminars and Original Investigations. 41, 11, p. 454.e9-454.e16Research output: Contribution to journal › Article › peer-review
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Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma
Wu, Y., Terekhanova, N. V., Caravan, W., Naser Al Deen, N., Lal, P., Chen, S., Mo, C. K., Cao, S., Li, Y., Karpova, A., Liu, R., Zhao, Y., Shinkle, A., Strunilin, I., Weimholt, C., Sato, K., Yao, L., Serasanambati, M., Yang, X., Wyczalkowski, M., & 22 others, Dec 2023, In: Nature communications. 14, 1, 1681.Research output: Contribution to journal › Article › peer-review
Open Access -
Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness
Clinical Proteomic Tumor Analysis Consortium, Jan 9 2023, In: Cancer cell. 41, 1, p. 139-163.e17Research output: Contribution to journal › Article › peer-review
Open Access -
Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin
Clinical Proteomic Tumor Analysis Consortium, Sep 11 2023, In: Cancer cell. 41, 9, p. 1567-1585.e7Research output: Contribution to journal › Article › peer-review
Open Access -
Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
Clinical Proteomic Tumor Analysis Consortium, Aug 31 2023, In: Cell. 186, 18, p. 3945-3967.e26Research output: Contribution to journal › Article › peer-review
Open Access -
Pan-cancer proteogenomics connects oncogenic drivers to functional states
Clinical Proteomic Tumor Analysis Consortium, Aug 31 2023, In: Cell. 186, 18, p. 3921-3944.e25Research output: Contribution to journal › Article › peer-review
Open Access -
Proteogenomic insights suggest druggable pathways in endometrial carcinoma
Clinical Proteomic Tumor Analysis Consortium, Sep 11 2023, In: Cancer cell. 41, 9, p. 1586-1605.e15Research output: Contribution to journal › Article › peer-review
Open Access -
Validation of the novel GLAS algorithm as an aid in the detection of liver fibrosis and cirrhosis based on GP73, LG2m, age, and sex
Hemken, P. M., Qin, X., Sokoll, L. J., Jackson, L., Feng, F., Li, P., Gawel, S. H., Tu, B., Lin, Z., Hartnett, J., Hawksworth, D., Tieman, B. C., Yoshimura, T., Kinukawa, H., Ning, S., Liu, E., Meng, F., Chen, F., Miao, J., Mi, X., & 3 others, Dec 2023, In: Clinical Proteomics. 20, 1, 53.Research output: Contribution to journal › Article › peer-review
Open Access -
VCAM-1 complements CA-125 in detecting recurrent ovarian cancer
Song, J., Sokoll, L. J., Zhang, Z. & Chan, D. W., Dec 2023, In: Clinical Proteomics. 20, 1, 25.Research output: Contribution to journal › Article › peer-review
Open Access -
2022
Impact of Prostate Health Index Results for Prediction of Biopsy Grade Reclassification during Active Surveillance
Filson, C. P., Zhu, K., Huang, Y., Zheng, Y., Newcomb, L. F., Williams, S., Brooks, J. D., Carroll, P. R., Dash, A., Ellis, W. J., Gleave, M. E., Liss, M. A., Martin, F., McKenney, J. K., Morgan, T. M., Wagner, A. A., Sokoll, L. J., Sanda, M. G., Chan, D. W. & Lin, D. W., Nov 1 2022, In: Journal of Urology. 208, 5, p. 1037-1045 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Neoplastic cell enrichment of tumor tissues using coring and laser microdissection for proteomic and genomic analyses of pancreatic ductal adenocarcinoma
Li, Q. K., Hu, Y., Chen, L., Schnaubelt, M., Cui Zhou, D., Li, Y., Lu, R. J. H., Thiagarajan, M., Hostetter, G., Newton, C. J., Jewell, S. D., Omenn, G., Robles, A. I., Mesri, M., Bathe, O. F., Zhang, B., Ding, L., Hruban, R. H., Chan, D. W. & Zhang, H., Dec 2022, In: Clinical Proteomics. 19, 1, 36.Research output: Contribution to journal › Article › peer-review
Open Access -
2021
A panel of selected serum protein biomarkers for the detection of aggressive prostate cancer
Song, J., Ma, S., Sokoll, L. J., Eguez, R. V., Höti, N., Zhang, H., Mohr, P., Dua, R., Patil, D., May, K. D., Williams, S., Arnold, R., Sanda, M. G., Chan, D. W. & Zhang, Z., 2021, In: Theranostics. 11, 13, p. 6214-6224 11 p.Research output: Contribution to journal › Article › peer-review
Open Access -
A proteogenomic portrait of lung squamous cell carcinoma
Clinical Proteomic Tumor Analysis Consortium, Aug 5 2021, In: Cell. 184, 16, p. 4348-4371.e40Research output: Contribution to journal › Article › peer-review
Open Access -
Detection of Uveal Melanoma by Multiplex Immunoassays of Serum Biomarkers
Song, J., Zhang, Z. & Chan, D. W., 2021, Methods in Molecular Biology. Humana Press Inc., p. 447-459 13 p. (Methods in Molecular Biology; vol. 2265).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Proteogenomic and metabolomic characterization of human glioblastoma
Clinical Proteomic Tumor Analysis Consortium, Apr 12 2021, In: Cancer cell. 39, 4, p. 509-528.e20Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Proteogenomic characterization of pancreatic ductal adenocarcinoma
Clinical Proteomic Tumor Analysis Consortium, Sep 16 2021, In: Cell. 184, 19, p. 5031-5052.e26Research output: Contribution to journal › Article › peer-review
Open Access -
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
Clinical Proteomic Tumor Analysis Consortium, Mar 8 2021, In: Cancer cell. 39, 3, p. 361-379.e16Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Validation of serum biomarkers that complement CA19-9 in detecting early pancreatic cancer using electrochemiluminescent-based multiplex immunoassays
Song, J., Sokoll, L. J., Chan, D. W. & Zhang, Z., Dec 2021, In: Biomedicines. 9, 12, 1897.Research output: Contribution to journal › Article › peer-review
Open Access -
2020
A high-stringency blueprint of the human proteome
Adhikari, S., Nice, E. C., Deutsch, E. W., Lane, L., Omenn, G. S., Pennington, S. R., Paik, Y. K., Overall, C. M., Corrales, F. J., Cristea, I. M., Van Eyk, J. E., Uhlén, M., Lindskog, C., Chan, D. W., Bairoch, A., Waddington, J. C., Justice, J. L., LaBaer, J., Rodriguez, H., He, F., & 26 others, Dec 1 2020, In: Nature communications. 11, 1, 5301.Research output: Contribution to journal › Review article › peer-review
Open Access12 Scopus citations -
An Integrated Workflow for Global, Glyco-, and Phospho-proteomic Analysis of Tumor Tissues
Zhou, Y., Lih, T. S. M., Yang, G., Chen, S. Y., Chen, L., Chan, D. W., Zhang, H. & Li, Q. K., Jan 21 2020, In: Analytical Chemistry. 92, 2, p. 1842-1849 8 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Development and evaluation of the MiCheck test for aggressive prostate cancer
Shore, N. D., Pieczonka, C. M., Henderson, R. J., Bailen, J. L., Saltzstein, D. R., Concepcion, R. S., Beebe-Dimmer, J. L., Ruterbusch, J. J., Levin, R. A., Wissmueller, S., Le, T. H., Gillatt, D., Chan, D. W., Campbell, D. H. & Walsh, B. J., Aug 2020, In: Urologic Oncology: Seminars and Original Investigations. 38, 8, p. 683.e11-683.e18Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Erratum: Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma (Cell (2019) 179(4) (964–983.e31), (S0092867419311237), (10.1016/j.cell.2019.10.007))
Clinical Proteomic Tumor Analysis Consortium, Jan 9 2020, In: Cell. 180, 1, p. 207 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access7 Scopus citations -
Erratum: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability (Cell Reports Medicine (2020) 1(1), (S2666379120300045), (10.1016/j.xcrm.2020.100004))
Clinical Proteomic Tumor Analysis Consortium, Aug 25 2020, In: Cell Reports Medicine. 1, 5, 100075.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Erratum: Proteomic analysis of degradation ubiquitin signaling by ubiquitin occupancy changes responding to 26S proteasome inhibition (Clinical Proteomics (2020) 17 (2) DOI: 10.1186/s1201-4-020-9265-x)
Hristova, V., Sun, S., Zhang, H. & Chan, D. W., Feb 21 2020, In: Clinical Proteomics. 17, 1, 6.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Glycoproteomics-based signatures for tumor subtyping and clinical outcome prediction of high-grade serous ovarian cancer
Pan, J., Hu, Y., Sun, S., Chen, L., Schnaubelt, M., Clark, D., Ao, M., Zhang, Z., Chan, D., Qian, J. & Zhang, H., Dec 2020, In: Nature communications. 11, 1, 6139.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma
Clinical Proteomic Tumor Analysis Consortium, Oct 20 2020, In: Cell Reports. 33, 3, 108276.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Malignancy-associated endocrine disorders
Sokoll, L. & Chan, D. W., Jan 1 2020, Handbook of Diagnostic Endocrinology. Elsevier, p. 449-475 27 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes
Thomas, S. N., Friedrich, B., Schnaubelt, M., Chan, D. W., Zhang, H. & Aebersold, R., Jun 26 2020, In: iScience. 23, 6, 101079.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Proteogenomic Characterization of Endometrial Carcinoma
the Clinical Proteomic Tumor Analysis Consortium, Feb 20 2020, In: Cell. 180, 4, p. 729-748.e26Research output: Contribution to journal › Article › peer-review
Open Access53 Scopus citations -
Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability
Clinical Proteomic Tumor Analysis Consortium, Apr 21 2020, In: Cell Reports Medicine. 1, 1, 100004.Research output: Contribution to journal › Article › peer-review
Open Access -
Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
Clinical Proteomic Tumor Analysis Consortium, Jul 9 2020, In: Cell. 182, 1, p. 200-225.e35Research output: Contribution to journal › Article › peer-review
Open Access36 Scopus citations -
Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
Clinical Proteomic Tumor Analysis Consortium, Nov 25 2020, In: Cell. 183, 5, p. 1436-1456.e31Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Proteomic analysis of degradation ubiquitin signaling by ubiquitin occupancy changes responding to 26S proteasome inhibition
Hristova, V., Sun, S., Zhang, H. & Chan, D. W., Jan 25 2020, In: Clinical Proteomics. 17, 1, 2.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Proteomic Analysis of the Air-Way Fluid in Lung Cancer. Detection of Periostin in Bronchoalveolar Lavage (BAL)
Zhou, Y., Yang, W., Ao, M., Höti, N., Gabrielson, E., Chan, D. W., Zhang, H. & Li, Q. K., Jul 3 2020, In: Frontiers in Oncology. 10, 1072.Research output: Contribution to journal › Article › peer-review
Open Access -
Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets
Zhou, Y., Lih, T. M., Pan, J., Höti, N., Dong, M., Cao, L., Hu, Y., Cho, K. C., Chen, S. Y., Eguez, R. V., Gabrielson, E., Chan, D. W., Zhang, H. & Li, Q. K., Dec 2020, In: Journal of Hematology and Oncology. 13, 1, 170.Research output: Contribution to journal › Article › peer-review
Open Access -
Urinary glycoproteins associated with aggressive prostate cancer
Dong, M., Mamie Lih, T., Chen, S. Y., Cho, K. C., Eguez, R. V., Höti, N., Zhou, Y., Yang, W., Mangold, L., Chan, D. W., Zhang, Z., Sokoll, L. J., Partin, A. & Zhang, H., 2020, In: Theranostics. 10, 26, p. 11892-11907 16 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
2019
A multiplex immunoassay of serum biomarkers for the detection of uveal melanoma
Song, J., Merbs, S. L., Sokoll, L. J., Chan, D. W. & Zhang, Z., Mar 5 2019, In: Clinical Proteomics. 16, 1, 10.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Cancer biomarker discovery and translation: proteomics and beyond
Hristova, V. A. & Chan, D. W., Feb 1 2019, In: Expert Review of Proteomics. 16, 2, p. 93-103 11 p.Research output: Contribution to journal › Review article › peer-review
Open Access12 Scopus citations -
Challenges and opportunities in the proteomic characterization of clear cell renal cell carcinoma (ccRCC): A critical step towards the personalized care of renal cancers
Li, Q. K., Pavlovich, C. P., Zhang, H., Kinsinger, C. R. & Chan, D. W., Apr 2019, In: Seminars in Cancer Biology. 55, p. 8-15 8 p.Research output: Contribution to journal › Review article › peer-review
Open Access19 Scopus citations -
Development of a glycoproteomic strategy to detect more aggressive prostate cancer using lectin-immunoassays for serum fucosylated PSA
Wang, C., Höti, N., Lih, T. S. M., Sokoll, L. J., Zhang, R., Zhang, Z., Zhang, H. & Chan, D. W., Apr 6 2019, In: Clinical Proteomics. 16, 1, 13.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Identification of serum biomarker panels for the early detection of pancreatic cancer
Song, J., Sokoll, L. J., Pasay, J. J., Rubin, A. L., Li, H., Bach, D. M., Chan, D. W. & Zhang, Z., Jan 2019, In: Cancer Epidemiology Biomarkers and Prevention. 28, 1, p. 174-182 9 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma
Clinical Proteomic Tumor Analysis Consortium, Oct 31 2019, In: Cell. 179, 4, p. 964-983.e31Research output: Contribution to journal › Article › peer-review
Open Access74 Scopus citations -
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
Clinical Proteomic Tumor Analysis Consortium, May 2 2019, In: Cell. 177, 4, p. 1035-1049.e19Research output: Contribution to journal › Article › peer-review
Open Access126 Scopus citations -
Proteome-wide tyrosine phosphorylation analysis reveals dysregulated signaling pathways in ovarian tumors
Song, G., Chen, L., Zhang, B., Song, Q., Yu, Y., Moore, C., Wang, T. L., Shih, I. M., Zhang, H., Chan, D. W., Zhang, Z. & Zhu, H., Mar 2019, In: Molecular and Cellular Proteomics. 18, 3, p. 448-460 13 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Validation of a novel model for the early detection of hepatocellular carcinoma
Hemken, P. M., Sokoll, L. J., Yang, X., Dai, J., Elliott, D., Gawel, S. H., Lucht, M., Feng, Z., Marrero, J. A., Srivastava, S., Chan, D. W. & Davis, G. J., Jan 16 2019, In: Clinical Proteomics. 16, 1, 2.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
2018
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry
Mertins, P., Tang, L. C., Krug, K., Clark, D. J., Gritsenko, M. A., Chen, L., Clauser, K. R., Clauss, T. R., Shah, P., Gillette, M. A., Petyuk, V. A., Thomas, S. N., Mani, D. R., Mundt, F., Moore, R. J., Hu, Y., Zhao, R., Schnaubelt, M., Keshishian, H., Monroe, M. E., & 9 others, Jul 1 2018, In: Nature protocols. 13, 7, p. 1632-1661 30 p.Research output: Contribution to journal › Article › peer-review
100 Scopus citations -
2017
An integrated proteomic and glycoproteomic approach uncovers differences in glycosylation occupancy from benign and malignant epithelial ovarian tumors
Li, Q. K., Shah, P., Tian, Y., Hu, Y., Roden, R. B. S., Zhang, H. & Chan, D. W., May 10 2017, In: Clinical Proteomics. 14, 1, 16.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations