Chan-Hyun Na

Assistant Professor

20032019
If you made any changes in Pure, your changes will be visible here soon.

Research Output 2003 2019

Filter
Article
2019

Integrated transcriptomic and proteomic analysis of human eccrine sweat glands identifies missing and novel proteins

Na, C-H., Sharma, N., MadugUndu, A. K., Chen, R., Aksit, M. A., Rosson, G. D., Cutting, G. R. & Pandey, A., Jan 1 2019, In : Molecular and Cellular Proteomics. 18, 7, p. 1382-1395 14 p.

Research output: Contribution to journalArticle

Eccrine Glands
Sweat Glands
Proteome
Proteomics
Physiology

Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells

Madugundu, A. K., Na, C. H., Nirujogi, R. S., Renuse, S., Kim, K. P., Burns, K. H., Wilks, C., Langmead, B., Ellis, S. E., Collado-Torres, L., Halushka, M. K., Kim, M. S. & Pandey, A., Jan 1 2019, In : Proteomics. 1800315.

Research output: Contribution to journalArticle

Endothelial cells
Human Umbilical Vein Endothelial Cells
Proteomics
Proteins
Methylation

Quantitative Proteomic Profiling of Cerebrospinal Fluid to Identify Candidate Biomarkers for Alzheimer's Disease

Sathe, G., Na, C-H., Renuse, S., Madugundu, A. K., Albert, M., Moghekar, A. R. & Pandey, A., Jan 1 2019, (Accepted/In press) In : Proteomics - Clinical Applications. 1800105.

Research output: Contribution to journalArticle

Cerebrospinal fluid
Biomarkers
Proteomics
Cerebrospinal Fluid
Alzheimer Disease
2018

Activity-Dependent Degradation of the Nascentome by the Neuronal Membrane Proteasome

Ramachandran, K. V., Fu, J. M., Schaffer, T. B., Na, C-H., Delannoy, M. & Margolis, S. S., Jul 5 2018, In : Molecular Cell. 71, 1, p. 169-177.e6

Research output: Contribution to journalArticle

Proteasome Endopeptidase Complex
Membranes
Ubiquitination
Proteins
Ribosomes

BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation

Kim, D. I., Cutler, J. A., Na, C-H., Reckel, S., Renuse, S., Madugundu, A. K., Tahir, R., Goldschmidt, H. L., Reddy, K. L., Huganir, R. L., Wu, X., Zachara, N. E., Hantschel, O. & Pandey, A., Feb 2 2018, In : Journal of Proteome Research. 17, 2, p. 759-769 11 p.

Research output: Contribution to journalArticle

Biotinylation
Biotin
Technology
Labeling
Proteins

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini

Na, C-H., Barbhuiya, M. A., Kim, M. S., Verbruggen, S., Eacker, S., Pletnikova, O., Troncoso, J. C., Halushka, M. K., Menschaert, G., Overall, C. M. & Pandey, A., Jan 1 2018, In : Genome Research. 28, 1, p. 25-36 12 p.

Research output: Contribution to journalArticle

Ribosomes
Methionine
Translational Peptide Chain Initiation
Proteins
Initiator Codon

Generation and proteome profiling of PBMC-originated, iPSC-derived corneal endothelial cells

Ali, M., Khan, S., Vasanth, S., Ahmed, M. R., Chen, R., Na, C-H., Thomson, J. J., Qiu, C., Gottsch, J. D. & Riazuddin, S. A., May 1 2018, In : Investigative Ophthalmology and Visual Science. 59, 6, p. 2437-2444 8 p.

Research output: Contribution to journalArticle

Induced Pluripotent Stem Cells
Proteome
Blood Cells
Endothelial Cells
Corneal Endothelium

Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover

Heo, S., Diering, G. H., Na, C-H., Nirujogi, R. S., Bachman, J. L., Pandey, A. & Huganir, R. L., Apr 17 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 16, p. E3827-E3836

Research output: Contribution to journalArticle

Synaptosomes
Proteomics
Synapses
Proteins
Maintenance

Identification of novel transcripts and peptides in developing murine lens

Khan, S., Ali, M., Kabir, F., Chen, R., Na, C-H., Lee, M. C. W., Pourmand, N., Hackett, S. F. & Riazuddin, S. A., Dec 1 2018, In : Scientific Reports. 8, 1, 11162.

Research output: Contribution to journalArticle

Lenses
RNA Splice Sites
Peptides
Proteome
Transcriptome

Phosphotyrosine profiling of human cerebrospinal fluid

Sathe, G., Na, C-H., Renuse, S., Madugundu, A., Albert, M., Moghekar, A. R. & Pandey, A., Sep 12 2018, In : Clinical Proteomics. 15, 1, 29.

Research output: Contribution to journalArticle

Cerebrospinal fluid
Phosphotyrosine
Cerebrospinal Fluid
Tyrosine
Peptides

Proteome profiling of developing murine lens through mass spectrometry

Khan, S., Ali, M., Kabir, F., Renuse, S., Na, C-H., Conover Talbot, C., Hackett, S. F. & Riazuddin, S. A., Jan 1 2018, In : Investigative Ophthalmology and Visual Science. 59, 1, p. 100-107 8 p.

Research output: Contribution to journalArticle

Proteome
Lenses
Mass Spectrometry
Proteins
Crystalline Lens
2017
VDJ Recombinases
RAG-1 Genes
Genetic Recombination
Catalytic Domain
DNA

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes

Prasad, T. S. K., Mohanty, A. K., Kumar, M., Sreenivasamurthy, S. K., Dey, G., Nirujogi, R. S., Pinto, S. M., Madugundu, A. K., Patil, A. H., Advani, J., Manda, S. S., Gupta, M. K., Dwivedi, S. B., Kelkar, D. S., Hall, B., Jiang, X., Peery, A., Rajagopalan, P., Yelamanchi, S. D., Solanki, H. S. & 22 others, Raja, R., Sathe, G. J., Chavan, S., Verma, R., Patel, K. M., Jain, A. P., Syed, N., Datta, K. K., Khan, A. A., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, C. J., Na, C-H., Kumar, N., Sinnis, P., Sharakhov, I. V., Wang, C., Gowda, H., Tu, Z., Kumar, A. & Pandey, A., Jan 1 2017, In : Genome Research. 27, 1, p. 133-144 12 p.

Research output: Contribution to journalArticle

Proteomics
Genome
Proteome
Genes
Exons
2016

A sequence upstream of canonical PDZ-binding motif within CFTR COOH-terminus enhances NHERF1 interaction

Sharma, N., LaRusch, J., Sosnay, P. R., Gottschalk, L. B., Lopez, A. P., Pellicore, M. J., Evans, T., Davis, E., Atalar, M., Na, C-H., Rosson, G. D., Belchis, D. A., Milewski, M., Pandey, A. & Cutting, G. R., 2016, In : American Journal of Physiology - Lung Cellular and Molecular Physiology. 311, 6, p. L1170-L1182

Research output: Contribution to journalArticle

Cystic Fibrosis Transmembrane Conductance Regulator
Alanine
RNA Sequence Analysis
Amino Acids
Sweat Glands

PyQuant: A versatile framework for analysis of quantitative mass spectrometry data

Mitchell, C. J., Kim, M. S., Na, C-H. & Pandey, A., Aug 1 2016, In : Molecular and Cellular Proteomics. 15, 8, p. 2829-2838 10 p.

Research output: Contribution to journalArticle

Mass spectrometry
Mass Spectrometry
Proteomics
Pipelines
Ions
2015

Identification of protein markers specific for papillary renal cell carcinoma using imaging mass spectrometry

Na, C-H., Hong, J. H., Kim, W. S., Shanta, S. R., Bang, J. Y., Park, D., Kim, H. K. & Kim, K. P., 2015, In : Molecules and Cells. 38, 7, p. 624-629 6 p.

Research output: Contribution to journalArticle

Renal Cell Carcinoma
Mass Spectrometry
Apoferritins
Proteins
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry

Phosphoproteomic analysis reveals compensatory effects in the piriform cortex of VX nerve agent exposed rats

Nirujogi, R. S., Wright, J. D., Manda, S. S., Zhong, J., Na, C-H., Meyerhoff, J., Benton, B., Jabbour, R., Willis, K., Kim, M. S., Pandey, A. & Sekowski, J. W., Jan 1 2015, In : Proteomics. 15, 2-3, p. 487-499 13 p.

Research output: Contribution to journalArticle

Toxicity
Rats
Brain
Phosphorylation
Proteins
2014

Imaging mass spectrometry in papillary thyroid carcinoma for the identification and validation of biomarker proteins

Min, K. W., Bang, J. Y., Kim, K. P., Kim, W. S., Lee, S. H., Shanta, S. R., Lee, J. H., Hong, J. H., Lim, S. D., Yoo, Y. B. & Na, C-H., 2014, In : Journal of Korean Medical Science. 29, 7, p. 934-940 7 p.

Research output: Contribution to journalArticle

Mass Spectrometry
Biomarkers
Proteins
Neoplasms
Lasers
2012

Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2

Yang, Y., Duguay, D., Bédard, N., Rachalski, A., Baquiran, G., Na, C-H., Fahrenkrug, J., Storch, K. F., Peng, J., Wing, S. S. & Cermakian, N., Aug 15 2012, In : Biology Open. 1, 8, p. 789-801 13 p.

Research output: Contribution to journalArticle

Circadian Clocks
peptidases
ubiquitin
Ubiquitin
Circadian Rhythm

Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis

Na, C-H., Jones, D. R., Yang, Y., Wang, X., Xu, Y. & Peng, J., Sep 7 2012, In : Journal of Proteome Research. 11, 9, p. 4722-4732 11 p.

Research output: Contribution to journalArticle

Ubiquitination
Rats
Brain
Peptides
Antibodies
2011

Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of alzheimer disease

Dammer, E. B., Na, C-H., Xu, P., Seyfried, N. T., Duong, D. M., Cheng, D., Gearing, M., Rees, H., Lah, J. J., Levey, A. I., Rush, J. & Peng, J., Mar 25 2011, In : Journal of Biological Chemistry. 286, 12, p. 10457-10465 9 p.

Research output: Contribution to journalArticle

Polyubiquitin
Shock
Alzheimer Disease
Hot Temperature
Ubiquitin
2010

Dramatic increase in signal by integration of polymerase chain reaction and hybridization on surface of DNA microarray

Kim, K. T., Na, C-H., Yun, Y. M., Hwang, T. S., Kim, S. N. & Chae, C. B., Jan 1 2010, In : Analytical Biochemistry. 396, 1, p. 139-145 7 p.

Research output: Contribution to journalArticle

Polymerase chain reaction
Microarrays
Oligonucleotide Array Sequence Analysis
Signal detection
Polymerase Chain Reaction
2007

Inhibition of amyloid β-peptide production by blockage of β-secretase cleavage site of amyloid precursor protein

Na, C-H., Jeon, S. H., Zhang, G., Olson, G. L. & Chae, C. B., Jun 2007, In : Journal of Neurochemistry. 101, 6, p. 1583-1595 13 p.

Research output: Contribution to journalArticle

Amyloid Precursor Protein Secretases
Amyloid beta-Protein Precursor
Amyloid
Peptides
Alzheimer Disease
2003

A method for identification of the peptides that bind to a clone of thyroid-stimulating antibodies in the serum of Graves' disease patients

Na, C-H., Lee, M. H., Cho, B. Y. & Chae, C. B., Apr 1 2003, In : Journal of Clinical Endocrinology and Metabolism. 88, 4, p. 1570-1576 7 p.

Research output: Contribution to journalArticle

Thyroid-Stimulating Immunoglobulins
Graves Disease
Bacteriophages
Clone Cells
Thyrotropin Receptors