Chan-Hyun Na

Assistant Professor

20032019

Research output per year

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Research Output

2019

Integrated transcriptomic and proteomic analysis of human eccrine sweat glands identifies missing and novel proteins

Na, C-H., Sharma, N., MadugUndu, A. K., Chen, R., Aksit, M. A., Rosson, G. D., Cutting, G. R. & Pandey, A., Jan 1 2019, In : Molecular and Cellular Proteomics. 18, 7, p. 1382-1395 14 p.

Research output: Contribution to journalArticle

Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells

Madugundu, A. K., Na, C. H., Nirujogi, R. S., Renuse, S., Kim, K. P., Burns, K. H., Wilks, C., Langmead, B., Ellis, S. E., Collado-Torres, L., Halushka, M. K., Kim, M. S. & Pandey, A., Jan 1 2019, In : Proteomics. 1800315.

Research output: Contribution to journalArticle

Quantitative Proteomic Profiling of Cerebrospinal Fluid to Identify Candidate Biomarkers for Alzheimer's Disease

Sathe, G., Na, C-H., Renuse, S., Madugundu, A. K., Albert, M., Moghekar, A. R. & Pandey, A., Jan 1 2019, (Accepted/In press) In : Proteomics - Clinical Applications. 1800105.

Research output: Contribution to journalArticle

2018

Activity-Dependent Degradation of the Nascentome by the Neuronal Membrane Proteasome

Ramachandran, K. V., Fu, J. M., Schaffer, T. B., Na, C-H., Delannoy, M. & Margolis, S. S., Jul 5 2018, In : Molecular Cell. 71, 1, p. 169-177.e6

Research output: Contribution to journalArticle

BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation

Kim, D. I., Cutler, J. A., Na, C-H., Reckel, S., Renuse, S., Madugundu, A. K., Tahir, R., Goldschmidt, H. L., Reddy, K. L., Huganir, R. L., Wu, X., Zachara, N. E., Hantschel, O. & Pandey, A., Feb 2 2018, In : Journal of Proteome Research. 17, 2, p. 759-769 11 p.

Research output: Contribution to journalArticle

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini

Na, C-H., Barbhuiya, M. A., Kim, M. S., Verbruggen, S., Eacker, S., Pletnikova, O., Troncoso, J. C., Halushka, M. K., Menschaert, G., Overall, C. M. & Pandey, A., Jan 1 2018, In : Genome Research. 28, 1, p. 25-36 12 p.

Research output: Contribution to journalArticle

Generation and proteome profiling of PBMC-originated, iPSC-derived corneal endothelial cells

Ali, M., Khan, S., Vasanth, S., Ahmed, M. R., Chen, R., Na, C-H., Thomson, J. J., Qiu, C., Gottsch, J. D. & Riazuddin, S. A., May 1 2018, In : Investigative Ophthalmology and Visual Science. 59, 6, p. 2437-2444 8 p.

Research output: Contribution to journalArticle

Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover

Heo, S., Diering, G. H., Na, C-H., Nirujogi, R. S., Bachman, J. L., Pandey, A. & Huganir, R. L., Apr 17 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 16, p. E3827-E3836

Research output: Contribution to journalArticle

Identification of novel transcripts and peptides in developing murine lens

Khan, S., Ali, M., Kabir, F., Chen, R., Na, C-H., Lee, M. C. W., Pourmand, N., Hackett, S. F. & Riazuddin, S. A., Dec 1 2018, In : Scientific Reports. 8, 1, 11162.

Research output: Contribution to journalArticle

Phosphotyrosine profiling of human cerebrospinal fluid

Sathe, G., Na, C-H., Renuse, S., Madugundu, A., Albert, M., Moghekar, A. R. & Pandey, A., Sep 12 2018, In : Clinical Proteomics. 15, 1, 29.

Research output: Contribution to journalArticle

Proteome profiling of developing murine lens through mass spectrometry

Khan, S., Ali, M., Kabir, F., Renuse, S., Na, C-H., Conover Talbot, C., Hackett, S. F. & Riazuddin, S. A., Jan 1 2018, In : Investigative Ophthalmology and Visual Science. 59, 1, p. 100-107 8 p.

Research output: Contribution to journalArticle

2017

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes

Prasad, T. S. K., Mohanty, A. K., Kumar, M., Sreenivasamurthy, S. K., Dey, G., Nirujogi, R. S., Pinto, S. M., Madugundu, A. K., Patil, A. H., Advani, J., Manda, S. S., Gupta, M. K., Dwivedi, S. B., Kelkar, D. S., Hall, B., Jiang, X., Peery, A., Rajagopalan, P., Yelamanchi, S. D., Solanki, H. S. & 22 others, Raja, R., Sathe, G. J., Chavan, S., Verma, R., Patel, K. M., Jain, A. P., Syed, N., Datta, K. K., Khan, A. A., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, C. J., Na, C-H., Kumar, N., Sinnis, P., Sharakhov, I. V., Wang, C., Gowda, H., Tu, Z., Kumar, A. & Pandey, A., Jan 1 2017, In : Genome Research. 27, 1, p. 133-144 12 p.

Research output: Contribution to journalArticle

Mass Spectrometry Reveals Respiratory Viral Infection Biomarkers

Na, C-H. & Pandey, A., Apr 1 2017, In : EBioMedicine. 18, p. 21-22 2 p.

Research output: Contribution to journalComment/debate

2016

A sequence upstream of canonical PDZ-binding motif within CFTR COOH-terminus enhances NHERF1 interaction

Sharma, N., LaRusch, J., Sosnay, P. R., Gottschalk, L. B., Lopez, A. P., Pellicore, M. J., Evans, T., Davis, E., Atalar, M., Na, C-H., Rosson, G. D., Belchis, D. A., Milewski, M., Pandey, A. & Cutting, G. R., 2016, In : American Journal of Physiology - Lung Cellular and Molecular Physiology. 311, 6, p. L1170-L1182

Research output: Contribution to journalArticle

PyQuant: A versatile framework for analysis of quantitative mass spectrometry data

Mitchell, C. J., Kim, M. S., Na, C-H. & Pandey, A., Aug 1 2016, In : Molecular and Cellular Proteomics. 15, 8, p. 2829-2838 10 p.

Research output: Contribution to journalArticle

2015

Identification of protein markers specific for papillary renal cell carcinoma using imaging mass spectrometry

Na, C-H., Hong, J. H., Kim, W. S., Shanta, S. R., Bang, J. Y., Park, D., Kim, H. K. & Kim, K. P., 2015, In : Molecules and Cells. 38, 7, p. 624-629 6 p.

Research output: Contribution to journalArticle

Phosphoproteomic analysis reveals compensatory effects in the piriform cortex of VX nerve agent exposed rats

Nirujogi, R. S., Wright, J. D., Manda, S. S., Zhong, J., Na, C-H., Meyerhoff, J., Benton, B., Jabbour, R., Willis, K., Kim, M. S., Pandey, A. & Sekowski, J. W., Jan 1 2015, In : Proteomics. 15, 2-3, p. 487-499 13 p.

Research output: Contribution to journalArticle

2014

Global ubiquitination analysis by SILAC in mammalian cells

Wu, Z., Na, C-H., Tan, H. & Peng, J., 2014, Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC): Methods and Protocols. Humana Press Inc., Vol. 1188. p. 149-160 12 p. (Methods in Molecular Biology; vol. 1188).

Research output: Chapter in Book/Report/Conference proceedingChapter

Imaging mass spectrometry in papillary thyroid carcinoma for the identification and validation of biomarker proteins

Min, K. W., Bang, J. Y., Kim, K. P., Kim, W. S., Lee, S. H., Shanta, S. R., Lee, J. H., Hong, J. H., Lim, S. D., Yoo, Y. B. & Na, C-H., 2014, In : Journal of Korean Medical Science. 29, 7, p. 934-940 7 p.

Research output: Contribution to journalArticle

2012

Analysis of ubiquitinated proteome by quantitative mass spectrometry

Na, C-H. & Peng, J., 2012, Quantitative Methods in Proteomics. Vol. 893. p. 417-429 13 p. (Methods in Molecular Biology; vol. 893).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantitative proteomics to decipher ubiquitin signaling

Chen, P. C., Na, C-H. & Peng, J., Sep 2012, In : Amino Acids. 43, 3, p. 1049-1060 12 p.

Research output: Contribution to journalReview article

Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2

Yang, Y., Duguay, D., Bédard, N., Rachalski, A., Baquiran, G., Na, C-H., Fahrenkrug, J., Storch, K. F., Peng, J., Wing, S. S. & Cermakian, N., Aug 15 2012, In : Biology Open. 1, 8, p. 789-801 13 p.

Research output: Contribution to journalArticle

Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis

Na, C-H., Jones, D. R., Yang, Y., Wang, X., Xu, Y. & Peng, J., Sep 7 2012, In : Journal of Proteome Research. 11, 9, p. 4722-4732 11 p.

Research output: Contribution to journalArticle

2011

Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of alzheimer disease

Dammer, E. B., Na, C-H., Xu, P., Seyfried, N. T., Duong, D. M., Cheng, D., Gearing, M., Rees, H., Lah, J. J., Levey, A. I., Rush, J. & Peng, J., Mar 25 2011, In : Journal of Biological Chemistry. 286, 12, p. 10457-10465 9 p.

Research output: Contribution to journalArticle

2010

Dramatic increase in signal by integration of polymerase chain reaction and hybridization on surface of DNA microarray

Kim, K. T., Na, C-H., Yun, Y. M., Hwang, T. S., Kim, S. N. & Chae, C. B., Jan 1 2010, In : Analytical Biochemistry. 396, 1, p. 139-145 7 p.

Research output: Contribution to journalArticle

2007

Inhibition of amyloid β-peptide production by blockage of β-secretase cleavage site of amyloid precursor protein

Na, C-H., Jeon, S. H., Zhang, G., Olson, G. L. & Chae, C. B., Jun 2007, In : Journal of Neurochemistry. 101, 6, p. 1583-1595 13 p.

Research output: Contribution to journalArticle

2003

A method for identification of the peptides that bind to a clone of thyroid-stimulating antibodies in the serum of Graves' disease patients

Na, C-H., Lee, M. H., Cho, B. Y. & Chae, C. B., Apr 1 2003, In : Journal of Clinical Endocrinology and Metabolism. 88, 4, p. 1570-1576 7 p.

Research output: Contribution to journalArticle