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Research Output 2000 2020

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Article
2015

Neuroinflammation and brain atrophy in former NFL players: An in vivo multimodal imaging pilot study

Coughlin, J. M., Wang, Y., Munro, C., Ma, S., Yue, C., Chen, S., Airan, R., Kim, P. K., Adams, A. V., Garcia, C., Higgs, C., Sair, H., Sawa, A., Smith, G., Lyketsos, C. G., Caffo, B. S., Kassiou, M., Guilarte, T. R. & Pomper, M. G., Feb 1 2015, In : Neurobiology of Disease. 74, p. 58-65 8 p.

Research output: Contribution to journalArticle

Multimodal Imaging
Football
Atrophy
Verbal Learning
Brain Injuries

On tests of activation map dimensionality for fMRI-based studies of learning

Yang, J., Shmuelof, L., Xiao, L., Krakauer, J. W. & Caffo, B., 2015, In : Frontiers in Neuroscience. 9, FEB, 85.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Learning

Reproducibility and temporal structure in weekly resting-state fMRI over a period of 3.5 years

Choe, A., Jones, C., Joel, S. E., Muschelli, J., Belegu, V., Caffo, B. S., Lindquist, M., Van Zijl, P. C. & Pekar, J. J., Oct 30 2015, In : PLoS One. 10, 10, 0140134.

Research output: Contribution to journalArticle

reproducibility
Magnetic Resonance Imaging
Outcome Assessment (Health Care)
biomarkers
Biomarkers

Resting brain activity in disorders of consciousness: A systematic review and meta-analysis

Hannawi, Y., Lindquist, M., Caffo, B. S., Sair, H. & Stevens, R. D., Mar 24 2015, In : Neurology. 84, 12, p. 1272-1280 9 p.

Research output: Contribution to journalArticle

Consciousness Disorders
Persistent Vegetative State
Meta-Analysis
Functional Neuroimaging
Brain

Simultaneous Evaluation of Safety, Acceptability, Pericoital Kinetics, and Ex Vivo Pharmacodynamics Comparing Four Rectal Microbicide Vehicle Candidates

Leyva, F., Fuchs, E., Bakshi, R., Carballo-Dieguez, A., Ventuneac, A., Yue, C., Caffo, B. S., Du, Y., Torbenson, M., Li, L., Mullin, G., Lee, L. A., Rohan, L., Anton, P. A. & Hendrix, C., Nov 1 2015, In : AIDS Research and Human Retroviruses. 31, 11, p. 1089-1097 9 p.

Research output: Contribution to journalArticle

Anti-Infective Agents
Gels
HIV
Colon
Safety
2014

Analytic programming with fMRI data: A quick-start guide for statisticians using R

Eloyan, A., Li, S., Muschelli, J., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Feb 28 2014, In : PLoS One. 9, 2, e89470.

Research output: Contribution to journalArticle

magnetic resonance imaging
Magnetic Resonance Imaging
neurophysiology
Medical imaging
Diagnostic Imaging

An evaluation of independent component analyses with an application to resting-state fMRI

Risk, B. B., Matteson, D. S., Ruppert, D., Eloyan, A. & Caffo, B. S., 2014, In : Biometrics. 70, 1, p. 224-236 13 p.

Research output: Contribution to journalArticle

Functional Magnetic Resonance Imaging
magnetic resonance imaging
Magnetic Resonance Imaging
Evaluation
Principal Component Analysis

A unifying framework for marginalised random-intercept models of correlated binary outcomes

Swihart, B. J., Caffo, B. S. & Crainiceanu, C. M., 2014, In : International Statistical Review. 82, 2, p. 275-295 21 p.

Research output: Contribution to journalArticle

Binary Outcomes
Intercept
Likelihood
Correlated Binary Data
Copula Models

Cross-sectional and longitudinal association of body mass index and brain volume

Bobb, J. F., Schwartz, B. S., Davatzikos, C. & Caffo, B. S., Jan 2014, In : Human Brain Mapping. 35, 1, p. 75-88 14 p.

Research output: Contribution to journalArticle

Body Mass Index
Brain
Cross-Sectional Studies
Atrophy
Magnetic Resonance Imaging

Disruption of functional organization within the primary motor cortex in children with autism

Nebel, M. B., Joel, S. E., Muschelli, J., Barber, A. D., Caffo, B. S., Pekar, J. J. & Mostofsky, S. H., Feb 2014, In : Human Brain Mapping. 35, 2, p. 567-580 14 p.

Research output: Contribution to journalArticle

Motor Cortex
Autistic Disorder
Brain
Lower Extremity
Upper Extremity

Evaluating dynamic bivariate correlations in resting-state fMRI: A comparison study and a new approach

Lindquist, M., Xu, Y., Nebel, M. B. & Caffo, B. S., Nov 1 2014, In : NeuroImage. 101, p. 531-546 16 p.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Brain
Volatilization
Neuroimaging
Sensitivity and Specificity

Longitudinal high-dimensional principal components analysis with application to diffusion tensor imaging of multiple sclerosis

Zipunnikov, V., Greven, S., Shou, H., Caffo, B. S., Reich, D. S. & Crainiceanu, C. M., Dec 1 2014, In : Annals of Applied Statistics. 8, 4, p. 2175-2202 28 p.

Research output: Contribution to journalArticle

Diffusion tensor imaging
Multiple Sclerosis
Dimensional Analysis
Principal component analysis
Principal Component Analysis

Moneybarl: Exploiting pitcher decision-making using reinforcement learning

Sidhu, G. & Caffo, B. S., 2014, In : Annals of Applied Statistics. 8, 2, p. 926-955 30 p.

Research output: Contribution to journalArticle

Reinforcement learning
Reinforcement Learning
Decision making
Decision Making
Conditional Distribution

Reduction of motion-related artifacts in resting state fMRI using aCompCor

Muschelli, J., Nebel, M. B., Caffo, B. S., Barber, A. D., Pekar, J. J. & Mostofsky, S. H., Aug 1 2014, In : NeuroImage. 96, p. 22-35 14 p.

Research output: Contribution to journalArticle

Artifacts
Magnetic Resonance Imaging
Principal Component Analysis
Head

Regional brain distribution of translocator protein using [ 11C]DPA-713 PET in individuals infected with HIV

Coughlin, J. M., Wang, Y., Ma, S., Yue, C., Kim, P. K., Adams, A. V., Roosa, H. V., Gage, K. L., Stathis, M., Rais, R., Rojas, C., McGlothan, J. L., Watkins, C., Sacktor, N., Guilarte, T. R., Zhou, Y., Sawa, A., Slusher, B., Caffo, B. S., Kassiou, M. & 2 others, Endres, C. J. & Pomper, M. G., 2014, In : Journal of NeuroVirology. 20, 3, p. 219-232 14 p.

Research output: Contribution to journalArticle

Positron-Emission Tomography
HIV
Gyrus Cinguli
Brain
Neuroglia

Shrinkage prediction of seed-voxel brain connectivity using resting state fMRI

Shou, H., Eloyan, A., Nebel, M. B., Mejia, A., Pekar, J. J., Mostofsky, S. H., Caffo, B. S., Lindquist, M. & Crainiceanu, C. M., Nov 5 2014, In : NeuroImage. 102, P2, p. 938-944 7 p.

Research output: Contribution to journalArticle

Seeds
Magnetic Resonance Imaging
Brain
Research Personnel
Population

Spatial Bayesian variable selection models on functional magnetic resonance imaging time-series data

Lee, K. J., Jones, G. L., Caffo, B. S. & Bassett, S., 2014, In : Bayesian Analysis. 9, 3, p. 699-732 34 p.

Research output: Contribution to journalArticle

Bayesian Variable Selection
Oxygenation
Functional Magnetic Resonance Imaging
Selection Model
Time Series Data

Successful implementation of a unit-based quality nurse to reduce central line-associated bloodstream infections

Thom, K. A., Li, S., Custer, M., Preas, M. A., Rew, C. D., Cafeo, C., Leekha, S., Caffo, B. S., Scalea, T. M. & Lissauer, M. E., Feb 2014, In : American Journal of Infection Control. 42, 2, p. 139-143 5 p.

Research output: Contribution to journalArticle

Nurses
Infection
Intensive Care Units
Critical Care
Infection Control

The neural correlates of learned motor acuity

Shmuelof, L., Yang, J., Caffo, B. S., Mazzoni, P. & Krakauer, J., Aug 15 2014, In : Journal of Neurophysiology. 112, 4, p. 971-980 10 p.

Research output: Contribution to journalArticle

Motor Cortex
Cerebellum
Learning
Motor Skills
Signal-To-Noise Ratio

Variations in EEG discharges predict ADHD severity within individual Smith-Lemli-Opitz patients

Schreiber, J. M., Lanham, D. C., Trescher, W. H., Sparks, S. E., Wassif, C. A., Caffo, B. S., Porter, F. D., Tierney, E., Gropman, A. L. & Ewen, J. B., Jul 8 2014, In : Neurology. 83, 2, p. 151-159 9 p.

Research output: Contribution to journalArticle

Electroencephalography
Smith-Lemli-Opitz Syndrome
Autistic Disorder
Absence Epilepsy
Behavioral Symptoms
2013

A Decision-Theory Approach to Interpretable Set Analysis for High-Dimensional Data

Boca, S. M., Bravo, H. C., Caffo, B. S., Leek, J. T. & Parmigiani, G., 2013, In : Biometrics. 69, 3, p. 614-623 10 p.

Research output: Contribution to journalArticle

Decision Theory
Decision theory
High-dimensional Data
Genes
genes

Assessment of bias in experimentally measured diffusion tensor imaging parameters using SIMEX

Lauzon, C. B., Crainiceanu, C. M., Caffo, B. S. & Landman, B. A., Mar 1 2013, In : Magnetic Resonance in Medicine. 69, 3, p. 891-902 12 p.

Research output: Contribution to journalArticle

Diffusion Tensor Imaging
Anisotropy
Noise
Artifacts
Water

Axial 3D gradient-echo imaging for improved multiple sclerosis lesion detection in the cervical spinal cord at 3T

Ozturk, A., Aygun, N., Smith, S. A., Caffo, B. S., Calabresi, P. & Reich, D. S., Apr 2013, In : Neuroradiology. 55, 4, p. 431-439 9 p.

Research output: Contribution to journalArticle

Multiple Sclerosis
Spinal Cord
Magnetic Resonance Imaging
Magnetic Fields
Artifacts

Combining hidden Markov models for comparing the dynamics of multiple sleep electroencephalograms

Langrock, R., Swihart, B. J., Caffo, B. S., Punjabi, N. M. & Crainiceanu, C. M., Aug 30 2013, In : Statistics in Medicine. 32, 19, p. 3342-3356 15 p.

Research output: Contribution to journalArticle

Sleep
Markov Model
Electroencephalography
Sleep Apnea Syndromes
Health

Comparison of total hospital-acquired bloodstream infections to central line-associated bloodstream infections and implications for outcome measures in infection control

Leekha, S., Li, S., Thom, K. A., Anne Preas, M., Caffo, B. S., Morgan, D. J. & Harris, A. D., Sep 2013, In : Infection Control and Hospital Epidemiology. 34, 9, p. 984-986 3 p.

Research output: Contribution to journalArticle

Infection Control
Outcome Assessment (Health Care)
Infection
Intensive Care Units

Correction to "Easy Multiplicity Control in Equivalence Testing Using Two One-Sided Tests"

Caffo, B. S., Lauzon, C. & Röhmel, J., May 2013, In : American Statistician. 67, 2, p. 115-116 2 p.

Research output: Contribution to journalArticle

One-sided test
Multiplicity
Equivalence
Testing

Developmental changes in within- and between-network connectivity between late childhood and adulthood

Barber, A. D., Caffo, B. S., Pekar, J. J. & Mostofsky, S. H., Jan 2013, In : Neuropsychologia. 51, 1, p. 156-167 12 p.

Research output: Contribution to journalArticle

Cognition
Prefrontal Cortex
Parietal Lobe
Aptitude
Parahippocampal Gyrus
Short-Term Memory
demand
Prefrontal Cortex
activation
Motor Cortex

Ironing out the statistical wrinkles in "ten ironic rules"

Lindquist, M., Caffo, B. S. & Crainiceanu, C. M., Nov 1 2013, In : NeuroImage. 81, p. 499-502 4 p.

Research output: Contribution to journalArticle

Peer Review
Frustration
Research Personnel
Enema
Anti-Infective Agents
Safety
Acids
Colon

Likelihood-based population independent component analysis

Eloyan, A., Crainiceanu, C. M. & Caffo, B. S., Jul 2013, In : Biostatistics. 14, 3, p. 514-527 14 p.

Research output: Contribution to journalArticle

Independent Component Analysis
Likelihood
Functional Magnetic Resonance Imaging
Population
Magnetic Resonance Imaging

Practical marginalized multilevel models

Griswold, M. E., Swihart, B. J., Caffo, B. S. & Zeger, S., 2013, In : Stat. 2, 1, p. 129-142 14 p.

Research output: Contribution to journalArticle

Multilevel Models
Vision Disorders
Cross-Over Studies
Association Model
Epidemiologic Studies

Practical recommendations for population PK studies with sampling time errors

Choi, L., Crainiceanu, C. M. & Caffo, B. S., 2013, In : European Journal of Clinical Pharmacology. 69, 12, p. 2055-2064 10 p.

Research output: Contribution to journalArticle

Selection Bias
Pharmacokinetics
Population

Quantifying the reliability of image replication studies: The image intraclass correlation coefficient (I2C2)

Shou, H., Eloyan, A., Lee, S., Zipunnikov, V., Crainiceanu, A. N., Nebel, M. B., Caffo, B. S., Lindquist, M. & Crainiceanu, C. M., Dec 2013, In : Cognitive, Affective, & Behavioral Neuroscience. 13, 4, p. 714-724 11 p.

Research output: Contribution to journalArticle

Neuroimaging
Magnetic Resonance Imaging
Diffusion Tensor Imaging
Corpus Callosum
Anisotropy

Reliability of early cortical auditory gamma-band responses

Cervenka, M., Franaszczuk, P. J., Crone, N. E., Hong, B., Caffo, B. S., Bhatt, P., Lenz, F. & Boatman-Reich, D., Jan 2013, In : Clinical Neurophysiology. 124, 1, p. 70-82 13 p.

Research output: Contribution to journalArticle

Reproducibility of Results
Matched-Pair Analysis
Auditory Evoked Potentials
Noise
Epilepsy
2012

A computational neurodegenerative disease progression score: Method and results with the Alzheimer's disease neuroimaging initiative cohort

Jedynak, B. M., Lang, A., Liu, B., Katz, E., Zhang, Y., Wyman, B. T., Raunig, D., Jedynak, C. P., Caffo, B. S. & Prince, J. L., Nov 15 2012, In : NeuroImage. 63, 3, p. 1478-1486 9 p.

Research output: Contribution to journalArticle

Neuroimaging
Neurodegenerative Diseases
Disease Progression
Alzheimer Disease
Biomarkers

Analysis of Group ICA-Based Connectivity Measures from fMRI: Application to Alzheimer's Disease

Li, S., Eloyan, A., Joel, S., Mostofsky, S. H., Pekar, J. J., Bassett, S. & Caffo, B. S., Nov 30 2012, In : PLoS One. 7, 11, e49340.

Research output: Contribution to journalArticle

Independent component analysis
Alzheimer disease
magnetic resonance imaging
Alzheimer Disease
Magnetic Resonance Imaging

Association of social engagement with brain volumes assessed by structural MRI

James, B. D., Glass, T. A., Caffo, B. S., Bobb, J. F., Davatzikos, C., Yousem, D. M. & Schwartz, B. S., 2012, In : Journal of Aging Research. 2012, 512714.

Research output: Contribution to journalArticle

Brain
Linear Models
Intracranial Hypertension
Population Control
Corpus Callosum

Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging

Eloyan, A., Muschelli, J., Nebel, M. B., Liu, H., Han, F., Zhao, T., Barber, A. D., Joel, S., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Aug 30 2012, In : Frontiers in Systems Neuroscience. AUG 2012, p. 1-9 9 p.

Research output: Contribution to journalArticle

Attention Deficit Disorder with Hyperactivity
Magnetic Resonance Imaging
Biomarkers
Intelligence
Research

Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging

Eloyan, A., Muschelli, J., Nebel, M. B., Liu, H., Han, F., Zhao, T., Barber, A., Joel, S., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Jul 31 2012, In : Frontiers in Systems Neuroscience. JULY 2012

Research output: Contribution to journalArticle

Attention Deficit Disorder with Hyperactivity
Magnetic Resonance Imaging
Biomarkers
Intelligence
Research

Biological parametric mapping accounting for random regressors with regression calibration and model II regression

Yang, X., Lauzon, C. B., Crainiceanu, C. M., Caffo, B. S., Resnick, S. M. & Landman, B. A., Sep 2012, In : NeuroImage. 62, 3, p. 1761-1768 8 p.

Research output: Contribution to journalArticle

Calibration
Linear Models
Functional Neuroimaging
Positron-Emission Tomography
Software

Comparison of swab and sponge methodologies for identification of Acinetobacter baumannii from the hospital environment

Thom, K. A., Howard, T., Sembajwe, S., Harris, A. D., Strassle, P., Caffo, B. S., Carroll, K. C. & Johnson, J. K., Jun 2012, In : Journal of Clinical Microbiology. 50, 6, p. 2140-2141 2 p.

Research output: Contribution to journalArticle

Acinetobacter baumannii
Porifera
Patients' Rooms
Delivery of Health Care
Infection

Computerised lung sound analysis to improve the specificity of paediatric pneumonia diagnosis in resource-poor settings: Protocol and methods for an observational study

Ellington, L. E., Gilman, R. H., Tielsch, J. M., Steinhoff, M., Figueroa, D., Rodriguez, S., Caffo, B. S., Tracey, B., Elhilali, M., West, J. & Checkley, W., 2012, In : BMJ Open. 2, 1, 000506.

Research output: Contribution to journalArticle

Respiratory Sounds
Observational Studies
Auscultation
Pneumonia
Pediatrics

Distribution of cell-free and cell-associated HIV surrogates in the colon after simulated receptive anal intercourse in men who have sex with men

Louissaint, N. A., Nimmagadda, S., Fuchs, E., Bakshi, R., Cao, Y. J., Lee, L. A., Goldsmith, J., Caffo, B. S., Du, Y., King, K. E., Menendez, F. A., Torbenson, M. S. & Hendrix, C., Jan 1 2012, In : Journal of Acquired Immune Deficiency Syndromes. 59, 1, p. 10-17 8 p.

Research output: Contribution to journalArticle

Colon
HIV
Semen
Single-Photon Emission-Computed Tomography
Leukocytes

Distribution of cell-free and cell-associated HIV surrogates in the female genital tract after simulated vaginal intercourse

Louissaint, N. A., Fuchs, E., Bakshi, R., Nimmagadda, S., Du, Y., Macura, K., King, K. E., Wahl, R., Goldsmith, A. J., Caffo, B. S., Cao, Y. J., Anderson, J. & Hendrix, C., Mar 1 2012, In : Journal of Infectious Diseases. 205, 5, p. 725-732 8 p.

Research output: Contribution to journalArticle

Satellite Viruses
HIV
Semen
Isotopes
Uterus
Predictors
Likelihood
Regression
Multiple Sclerosis
Generalized Linear Mixed Model

Mixed effect Poisson log-linear models for clinical and epidemiological sleep hypnogram data

Swihart, B. J., Caffo, B. S., Crainiceanu, C. M. & Punjabi, N. M., Apr 30 2012, In : Statistics in Medicine. 31, 9, p. 855-870 16 p.

Research output: Contribution to journalArticle

Mixed Effects
Log-linear Models
Sleep
Poisson Model
Linear Models

Motor "dexterity": Evidence that left hemisphere lateralization of motor circuit connectivity is associated with better motor performance in children

Barber, A. D., Srinivasan, P., Joel, S. E., Caffo, B. S., Pekar, J. J. & Mostofsky, S. H., Jan 2012, In : Cerebral Cortex. 22, 1, p. 51-59 9 p.

Research output: Contribution to journalArticle

Aptitude
Putamen
Periodicity
Child Development
Thalamus

Movelets: A dictionary of movement

Bai, J., Goldsmith, J., Caffo, B. S., Glass, T. A. & Crainiceanu, C. M., 2012, In : Electronic Journal of Statistics. 6, p. 559-578 20 p.

Research output: Contribution to journalArticle

Time series
Accelerometer
Dictionary
Movement
Low Frequency

Myocardial structural associations with local electrograms: A study of postinfarct ventricular tachycardia pathophysiology and magnetic resonance-based noninvasive mapping

Sasaki, T., Miller, C., Hansford, R., Yang, J., Caffo, B. S., Zviman, M. M., Henrikson, C. A., Marine, J., Spragg, D. D., Cheng, A., Tandri, H., Sinha, S., Kolandaivelu, A., Zimmerman, S., Bluemke, D. A., Tomaselli, G. F., Berger, R. D., Calkins, H., Halperin, H. R. & Nazarian, S., Dec 2012, In : Circulation: Arrhythmia and Electrophysiology. 5, 6, p. 1081-1090 10 p.

Research output: Contribution to journalArticle

Ventricular Tachycardia
Cicatrix
Gadolinium
Magnetic Resonance Spectroscopy
Anti-Arrhythmia Agents