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Research Output 2000 2020

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A Bayesian hierarchical framework for spatial modeling of fMRI data

Bowman, F. D., Caffo, B. S., Bassett, S. & Kilts, C., Jan 1 2008, In : NeuroImage. 39, 1, p. 146-156 11 p.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Markov Chains
Brain
Cocaine
Substance-Related Disorders

A Bayesian hierarchical nonlinear mixture model in the presence of artifactual outliers in a population pharmacokinetic study

Choi, L., Caffo, B. S., Kohli, U., Pandharipande, P., Kurnik, D., Ely, E. W. & Stein, C. M., Oct 2011, In : Journal of Pharmacokinetics and Pharmacodynamics. 38, 5, p. 613-636 24 p.

Research output: Contribution to journalArticle

Nonlinear Dynamics
Pharmacokinetics
Population
Dexmedetomidine
Intensive Care Units
Principal Curves
Computed Tomography
Photon
Imaging
Curve
Diagnostic Tests
Lung Cancer
Routine Diagnostic Tests
Lung Neoplasms
Structural Zeros

A computational neurodegenerative disease progression score: Method and results with the Alzheimer's disease neuroimaging initiative cohort

Jedynak, B. M., Lang, A., Liu, B., Katz, E., Zhang, Y., Wyman, B. T., Raunig, D., Jedynak, C. P., Caffo, B. S. & Prince, J. L., Nov 15 2012, In : NeuroImage. 63, 3, p. 1478-1486 9 p.

Research output: Contribution to journalArticle

Neuroimaging
Neurodegenerative Diseases
Disease Progression
Alzheimer Disease
Biomarkers

Adaptive control of the false discovery rate in voxel-based morphometry

Chen, S., Wang, C., Eberly, L. E., Caffo, B. S. & Schwartz, B. S., Jul 2009, In : Human Brain Mapping. 30, 7, p. 2304-2311 8 p.

Research output: Contribution to journalArticle

Politics
Research Personnel
Magnetic Resonance Imaging

A Decision-Theory Approach to Interpretable Set Analysis for High-Dimensional Data

Boca, S. M., Bravo, H. C., Caffo, B. S., Leek, J. T. & Parmigiani, G., 2013, In : Biometrics. 69, 3, p. 614-623 10 p.

Research output: Contribution to journalArticle

Decision Theory
Decision theory
High-dimensional Data
Genes
genes

A Dynamic Directional Model for Effective Brain Connectivity Using Electrocorticographic (ECoG) Time Series

Zhang, T., Wu, J., Li, F., Caffo, B. S. & Boatman-Reich, D., Jan 2 2015, In : Journal of the American Statistical Association. 110, 509, p. 93-106 14 p.

Research output: Contribution to journalArticle

Connectivity
Time series
Potts Model
Spatial Resolution
Penalized Regression

A markov chain Monte Carlo algorithm for approximating exact conditional probabilities

Caffo, B. S. & Booth, J. G., 2001, In : Journal of Computational and Graphical Statistics. 10, 4, p. 730-745 16 p.

Research output: Contribution to journalArticle

Markov Chain Monte Carlo Algorithms
Conditional probability
Markov processes
Conditional Inference
Tables

A mechanisfic latent variable model for estimating drug concentrations in the male genital tract: A case study in drug kinetics

Choi, L., Caffo, B. S., Rohde, C. A., Ndovi, T. T. & Hendrix, C., Jun 30 2008, In : Statistics in Medicine. 27, 14, p. 2697-2714 18 p.

Research output: Contribution to journalArticle

Latent Variable Models
Drugs
Surrogate Markers
Pharmacokinetics
Kinetics

A Multicenter Longitudinal Study of Hospital-Onset Bacteremia: Time for a New Quality Outcome Measure?

Rock, C., Thom, K. A., Harris, A. D., Li, S., Morgan, D., Milstone, A., Caffo, B. S., Joshi, M. & Leekha, S., Feb 1 2016, In : Infection Control and Hospital Epidemiology. 37, 2, p. 143-148 6 p.

Research output: Contribution to journalArticle

Bacteremia
Multicenter Studies
Longitudinal Studies
Outcome Assessment (Health Care)
Infection

Analysis of Group ICA-Based Connectivity Measures from fMRI: Application to Alzheimer's Disease

Li, S., Eloyan, A., Joel, S., Mostofsky, S. H., Pekar, J. J., Bassett, S. & Caffo, B. S., Nov 30 2012, In : PLoS One. 7, 11, e49340.

Research output: Contribution to journalArticle

Independent component analysis
Alzheimer disease
magnetic resonance imaging
Alzheimer Disease
Magnetic Resonance Imaging

Analytic programming with fMRI data: A quick-start guide for statisticians using R

Eloyan, A., Li, S., Muschelli, J., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Feb 28 2014, In : PLoS One. 9, 2, e89470.

Research output: Contribution to journalArticle

magnetic resonance imaging
Magnetic Resonance Imaging
neurophysiology
Medical imaging
Diagnostic Imaging

An evaluation of independent component analyses with an application to resting-state fMRI

Risk, B. B., Matteson, D. S., Ruppert, D., Eloyan, A. & Caffo, B. S., 2014, In : Biometrics. 70, 1, p. 224-236 13 p.

Research output: Contribution to journalArticle

Functional Magnetic Resonance Imaging
magnetic resonance imaging
Magnetic Resonance Imaging
Evaluation
Principal Component Analysis

A new method to estimate quantitatively seminal vesicle and prostate gland contributions to ejaculate

Ndovi, T. T., Parsons, T., Choi, L., Caffo, B. S., Rohde, C. A. & Hendrix, C., Apr 2007, In : British Journal of Clinical Pharmacology. 63, 4, p. 404-420 17 p.

Research output: Contribution to journalArticle

Seminal Vesicles
Prostate
Prostate-Specific Antigen
Fructose
Biomarkers

An M-estimator for reduced-rank system identification

Chen, S., Liu, K., Yang, Y., Xu, Y., Lee, S., Lindquist, M., Caffo, B. S. & Vogelstein, J. T., Jan 15 2017, In : Pattern Recognition Letters. 86, p. 76-81 6 p.

Research output: Contribution to journalArticle

Time series
Identification (control systems)
Linear algebra
Parameter estimation
Magnetic Resonance Imaging

A no-gold-standard technique for objective assessment of quantitative nuclear-medicine imaging methods

Jha, A. K., Caffo, B. S. & Frey, E., Mar 15 2016, In : Physics in Medicine and Biology. 61, 7, p. 2780-2801 22 p.

Research output: Contribution to journalArticle

Nuclear Medicine
Gold
Noise
Organ Size
Task Performance and Analysis
Sleep Apnea Syndromes
Sleep
Snoring
Health
Population

A parcellation based nonparametric algorithm for independent component analysis with application to fMRI data

Li, S., Chen, S., Yue, C. & Caffo, B. S., 2016, In : Frontiers in Neuroscience. 10, JAN, 15.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Brain
Research

A Phase 1 Randomized, Blinded Comparison of the Pharmacokinetics and Colonic Distribution of Three Candidate Rectal Microbicide Formulations of Tenofovir 1% Gel with Simulated Unprotected Sex (CHARM-02)

Hiruy, H., Fuchs, E., Marzinke, M. A., Bakshi, R., Breakey, J. C., Aung, W. S., Manohar, M., Yue, C., Caffo, B. S., Du, Y., Abebe, K. Z., Spiegel, H. M. L., Rohan, L. C., McGowan, I. & Hendrix, C., Nov 1 2015, In : AIDS Research and Human Retroviruses. 31, 11, p. 1098-1108 11 p.

Research output: Contribution to journalArticle

Tenofovir
Unsafe Sex
Anti-Infective Agents
Glycerol
Pharmacokinetics

A prospective evaluation of a protocol for magnetic resonance imaging of patients with implanted cardiac devices

Nazarian, S., Hansford, R., Roguin, A., Goldsher, D., Zviman, M. M., Lardo, A. C., Caffo, B. S., Frick, K., Kraut, M. A., Kamel, I. R., Calkins, H., Berger, R. D., Bluemke, D. A. & Halperin, H. R., Oct 4 2011, In : Annals of Internal Medicine. 155, 7, p. 415-424 10 p.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Equipment and Supplies
Electric Impedance
Equipment Safety
Defibrillators
Cognition
Magnetic Resonance Imaging
Brain
Executive Function
Hand

Ascent-based Monte Carlo expectation-maximization

Caffo, B. S., Jank, W. & Jones, G. L., 2005, In : Journal of the Royal Statistical Society. Series B: Statistical Methodology. 67, 2, p. 235-251 17 p.

Research output: Contribution to journalArticle

Ascent
Expectation Maximization
Expectation-maximization Algorithm
Sample Size
Monte Carlo Algorithm

Assessing bioequivalence of generic antiepilepsy drugs

Krauss, G., Caffo, B. S., Chang, Y. T., Hendrix, C. & Chuang, K., Aug 2011, In : Annals of Neurology. 70, 2, p. 221-228 8 p.

Research output: Contribution to journalArticle

Generic Drugs
Therapeutic Equivalency
Drug Compounding
Pharmaceutical Preparations
Area Under Curve

Assessment of bias in experimentally measured diffusion tensor imaging parameters using SIMEX

Lauzon, C. B., Crainiceanu, C. M., Caffo, B. S. & Landman, B. A., Mar 1 2013, In : Magnetic Resonance in Medicine. 69, 3, p. 891-902 12 p.

Research output: Contribution to journalArticle

Diffusion Tensor Imaging
Anisotropy
Noise
Artifacts
Water
Cognition
Multiple Sclerosis
Magnetic Resonance Imaging
Odds Ratio
Brain

Association of social engagement with brain volumes assessed by structural MRI

James, B. D., Glass, T. A., Caffo, B. S., Bobb, J. F., Davatzikos, C., Yousem, D. M. & Schwartz, B. S., 2012, In : Journal of Aging Research. 2012, 512714.

Research output: Contribution to journalArticle

Brain
Linear Models
Intracranial Hypertension
Population Control
Corpus Callosum

A survey of the likelihood approach to bioequivalence trials

Choi, L., Caffo, B. S. & Rohde, C. A., Dec 30 2008, In : Statistics in Medicine. 27, 24, p. 4874-4894 21 p.

Research output: Contribution to journalArticle

Bioequivalence
Therapeutic Equivalency
Likelihood
Profile Likelihood
Drugs

A unifying framework for marginalised random-intercept models of correlated binary outcomes

Swihart, B. J., Caffo, B. S. & Crainiceanu, C. M., 2014, In : International Statistical Review. 82, 2, p. 275-295 21 p.

Research output: Contribution to journalArticle

Binary Outcomes
Intercept
Likelihood
Correlated Binary Data
Copula Models

A user-friendly introduction to link-probit-normal models

Caffo, B. S. & Griswold, M., May 2006, In : American Statistician. 60, 2, p. 139-145 7 p.

Research output: Contribution to journalArticle

Probit
Logit
Multivariate Normal
Random Effects
Model

Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging

Eloyan, A., Muschelli, J., Nebel, M. B., Liu, H., Han, F., Zhao, T., Barber, A., Joel, S., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Jul 31 2012, In : Frontiers in Systems Neuroscience. JULY 2012

Research output: Contribution to journalArticle

Attention Deficit Disorder with Hyperactivity
Magnetic Resonance Imaging
Biomarkers
Intelligence
Research

Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging

Eloyan, A., Muschelli, J., Nebel, M. B., Liu, H., Han, F., Zhao, T., Barber, A. D., Joel, S., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Aug 30 2012, In : Frontiers in Systems Neuroscience. AUG 2012, p. 1-9 9 p.

Research output: Contribution to journalArticle

Attention Deficit Disorder with Hyperactivity
Magnetic Resonance Imaging
Biomarkers
Intelligence
Research

Axial 3D gradient-echo imaging for improved multiple sclerosis lesion detection in the cervical spinal cord at 3T

Ozturk, A., Aygun, N., Smith, S. A., Caffo, B. S., Calabresi, P. & Reich, D. S., Apr 2013, In : Neuroradiology. 55, 4, p. 431-439 9 p.

Research output: Contribution to journalArticle

Multiple Sclerosis
Spinal Cord
Magnetic Resonance Imaging
Magnetic Fields
Artifacts

Bayesian inference of a directional brain network model for intracranial EEG data

Zhang, T., Sun, Y., Li, H., Yan, G., Tanabe, S., Miao, R., Wang, Y., Caffo, B. S. & Quigg, M. S., Apr 2020, In : Computational Statistics and Data Analysis. 144, 106847.

Research output: Contribution to journalArticle

Bayesian inference
Electroencephalography
Network Model
Brain
Ordinary differential equations

Bayesian inference of high-dimensional, cluster-structured ordinary differential equation models with applications to brain connectivity studies

Zhang, T., Yin, Q., Caffo, B. S., Sun, Y. & Boatman-Reich, D., Jun 1 2017, In : Annals of Applied Statistics. 11, 2, p. 868-897 30 p.

Research output: Contribution to journalArticle

Bayesian inference
Ordinary differential equations
Brain
Connectivity
Ordinary differential equation

Big Data and Neuroimaging

Webb-Vargas, Y., Chen, S., Fisher, A., Mejia, A., Xu, Y., Crainiceanu, C. M., Caffo, B. S. & Lindquist, M., May 22 2017, (Accepted/In press) In : Statistics in Biosciences. p. 1-16 16 p.

Research output: Contribution to journalArticle

Neuroimaging
Data analysis
Big data
Cover
Demonstrate

Biological parametric mapping accounting for random regressors with regression calibration and model II regression

Yang, X., Lauzon, C. B., Crainiceanu, C. M., Caffo, B. S., Resnick, S. M. & Landman, B. A., Sep 2012, In : NeuroImage. 62, 3, p. 1761-1768 8 p.

Research output: Contribution to journalArticle

Calibration
Linear Models
Functional Neuroimaging
Positron-Emission Tomography
Software

Brain volumes as predictors of tDCS effects in primary progressive aphasia

de Aguiar, V., Zhao, Y., Faria, A., Ficek, B., Webster, K. T., Wendt, H., Wang, Z., Hillis, A. E., Onyike, C. U., Frangakis, C., Caffo, B. & Tsapkini, K., Jan 2020, In : Brain and Language. 200, 104707.

Research output: Contribution to journalArticle

Open Access
Primary Progressive Aphasia
speech disorder
brain
Brain
Parietal Lobe

Characterizing sleep structure using the hypnogram

Swihart, B. J., Caffo, B. S., Bandeen Roche, K. J. & Punjabi, N. M., Aug 15 2008, In : Journal of Clinical Sleep Medicine. 4, 4, p. 349-355 7 p.

Research output: Contribution to journalArticle

Sleep
Sleep Apnea Syndromes
REM Sleep
Sleep Stages
Polysomnography

Cigarette smoking and nocturnal sleep architecture

Zhang, L., Samet, J., Caffo, B. S. & Punjabi, N. M., Sep 2006, In : American Journal of Epidemiology. 164, 6, p. 529-537 9 p.

Research output: Contribution to journalArticle

Sleep
Smoking
Sleep Stages
Confidence Intervals
Polysomnography

Clinical predictors of conduction disease progression in type I myotonic muscular dystrophy

Nazarian, S., Wagner, K. R., Caffo, B. S. & Tomaselli, G. F., Feb 2011, In : PACE - Pacing and Clinical Electrophysiology. 34, 2, p. 171-176 6 p.

Research output: Contribution to journalArticle

Myotonic Dystrophy
Muscular Dystrophies
Disease Progression
Atrial Flutter
Thymine

Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia

de Aguiar, V., Zhao, Y., Ficek, B. N., Webster, K., Rofes, A., Wendt, H., Frangakis, C., Caffo, B., Hillis, A. E., Rapp, B. & Tsapkini, K., Mar 2020, In : Cortex. 124, p. 66-84 19 p.

Research output: Contribution to journalArticle

Primary Progressive Aphasia
Language
Short-Term Memory
Therapeutics
Language Therapy

Combining hidden Markov models for comparing the dynamics of multiple sleep electroencephalograms

Langrock, R., Swihart, B. J., Caffo, B. S., Punjabi, N. M. & Crainiceanu, C. M., Aug 30 2013, In : Statistics in Medicine. 32, 19, p. 3342-3356 15 p.

Research output: Contribution to journalArticle

Sleep
Markov Model
Electroencephalography
Sleep Apnea Syndromes
Health

Comparing test-retest reliability of dynamic functional connectivity methods

Choe, A., Nebel, M. B., Barber, A. D., Cohen, J. R., Xu, Y., Pekar, J. J., Caffo, B. S. & Lindquist, M., Sep 1 2017, In : NeuroImage. 158, p. 155-175 21 p.

Research output: Contribution to journalArticle

Reproducibility of Results
Brain
Magnetic Resonance Imaging
Connectome
Signal-To-Noise Ratio

Comparison of proportions for composite endpoints with missing components

Li, X. & Caffo, B. S., Mar 2011, In : Journal of Biopharmaceutical Statistics. 21, 2, p. 271-281 11 p.

Research output: Contribution to journalArticle

Sample Size
Proportion
Composite
Clinical Trials
Statistical Power

Comparison of swab and sponge methodologies for identification of Acinetobacter baumannii from the hospital environment

Thom, K. A., Howard, T., Sembajwe, S., Harris, A. D., Strassle, P., Caffo, B. S., Carroll, K. C. & Johnson, J. K., Jun 2012, In : Journal of Clinical Microbiology. 50, 6, p. 2140-2141 2 p.

Research output: Contribution to journalArticle

Acinetobacter baumannii
Porifera
Patients' Rooms
Delivery of Health Care
Infection

Comparison of total hospital-acquired bloodstream infections to central line-associated bloodstream infections and implications for outcome measures in infection control

Leekha, S., Li, S., Thom, K. A., Anne Preas, M., Caffo, B. S., Morgan, D. J. & Harris, A. D., Sep 2013, In : Infection Control and Hospital Epidemiology. 34, 9, p. 984-986 3 p.

Research output: Contribution to journalArticle

Infection Control
Outcome Assessment (Health Care)
Infection
Intensive Care Units

Computerised lung sound analysis to improve the specificity of paediatric pneumonia diagnosis in resource-poor settings: Protocol and methods for an observational study

Ellington, L. E., Gilman, R. H., Tielsch, J. M., Steinhoff, M., Figueroa, D., Rodriguez, S., Caffo, B. S., Tracey, B., Elhilali, M., West, J. & Checkley, W., 2012, In : BMJ Open. 2, 1, 000506.

Research output: Contribution to journalArticle

Respiratory Sounds
Observational Studies
Auscultation
Pneumonia
Pediatrics

Connectivity supporting attention in children with attention deficit hyperactivity disorder

Barber, A. D., Jacobson, L. A., Wexler, J. L., Nebel, M. B., Caffo, B. S., Pekar, J. J. & Mostofsky, S. H., 2015, In : NeuroImage: Clinical. 7, p. 68-81 14 p.

Research output: Contribution to journalArticle

Attention Deficit Disorder with Hyperactivity
Brain
Occipital Lobe
Frontal Lobe
Short-Term Memory

Correction to "Easy Multiplicity Control in Equivalence Testing Using Two One-Sided Tests"

Caffo, B. S., Lauzon, C. & Röhmel, J., May 2013, In : American Statistician. 67, 2, p. 115-116 2 p.

Research output: Contribution to journalArticle

One-sided test
Multiplicity
Equivalence
Testing