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Article

A Bayesian hierarchical framework for spatial modeling of fMRI data

Bowman, F. D., Caffo, B. S., Bassett, S. & Kilts, C., Jan 1 2008, In : NeuroImage. 39, 1, p. 146-156 11 p.

Research output: Contribution to journalArticle

A Bayesian hierarchical nonlinear mixture model in the presence of artifactual outliers in a population pharmacokinetic study

Choi, L., Caffo, B. S., Kohli, U., Pandharipande, P., Kurnik, D., Ely, E. W. & Stein, C. M., Oct 2011, In : Journal of Pharmacokinetics and Pharmacodynamics. 38, 5, p. 613-636 24 p.

Research output: Contribution to journalArticle

A computational neurodegenerative disease progression score: Method and results with the Alzheimer's disease neuroimaging initiative cohort

Jedynak, B. M., Lang, A., Liu, B., Katz, E., Zhang, Y., Wyman, B. T., Raunig, D., Jedynak, C. P., Caffo, B. S. & Prince, J. L., Nov 15 2012, In : NeuroImage. 63, 3, p. 1478-1486 9 p.

Research output: Contribution to journalArticle

Adaptive control of the false discovery rate in voxel-based morphometry

Chen, S., Wang, C., Eberly, L. E., Caffo, B. S. & Schwartz, B. S., Jul 2009, In : Human Brain Mapping. 30, 7, p. 2304-2311 8 p.

Research output: Contribution to journalArticle

A Decision-Theory Approach to Interpretable Set Analysis for High-Dimensional Data

Boca, S. M., Bravo, H. C., Caffo, B. S., Leek, J. T. & Parmigiani, G., 2013, In : Biometrics. 69, 3, p. 614-623 10 p.

Research output: Contribution to journalArticle

A Dynamic Directional Model for Effective Brain Connectivity Using Electrocorticographic (ECoG) Time Series

Zhang, T., Wu, J., Li, F., Caffo, B. S. & Boatman-Reich, D., Jan 2 2015, In : Journal of the American Statistical Association. 110, 509, p. 93-106 14 p.

Research output: Contribution to journalArticle

A markov chain Monte Carlo algorithm for approximating exact conditional probabilities

Caffo, B. S. & Booth, J. G., 2001, In : Journal of Computational and Graphical Statistics. 10, 4, p. 730-745 16 p.

Research output: Contribution to journalArticle

A mechanisfic latent variable model for estimating drug concentrations in the male genital tract: A case study in drug kinetics

Choi, L., Caffo, B. S., Rohde, C. A., Ndovi, T. T. & Hendrix, C., Jun 30 2008, In : Statistics in Medicine. 27, 14, p. 2697-2714 18 p.

Research output: Contribution to journalArticle

A Multicenter Longitudinal Study of Hospital-Onset Bacteremia: Time for a New Quality Outcome Measure?

Rock, C., Thom, K. A., Harris, A. D., Li, S., Morgan, D., Milstone, A., Caffo, B. S., Joshi, M. & Leekha, S., Feb 1 2016, In : Infection Control and Hospital Epidemiology. 37, 2, p. 143-148 6 p.

Research output: Contribution to journalArticle

Analysis of Group ICA-Based Connectivity Measures from fMRI: Application to Alzheimer's Disease

Li, S., Eloyan, A., Joel, S., Mostofsky, S. H., Pekar, J. J., Bassett, S. & Caffo, B. S., Nov 30 2012, In : PLoS One. 7, 11, e49340.

Research output: Contribution to journalArticle

Analytic programming with fMRI data: A quick-start guide for statisticians using R

Eloyan, A., Li, S., Muschelli, J., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Feb 28 2014, In : PLoS One. 9, 2, e89470.

Research output: Contribution to journalArticle

An evaluation of independent component analyses with an application to resting-state fMRI

Risk, B. B., Matteson, D. S., Ruppert, D., Eloyan, A. & Caffo, B. S., 2014, In : Biometrics. 70, 1, p. 224-236 13 p.

Research output: Contribution to journalArticle

A new method to estimate quantitatively seminal vesicle and prostate gland contributions to ejaculate

Ndovi, T. T., Parsons, T., Choi, L., Caffo, B. S., Rohde, C. A. & Hendrix, C., Apr 2007, In : British Journal of Clinical Pharmacology. 63, 4, p. 404-420 17 p.

Research output: Contribution to journalArticle

An M-estimator for reduced-rank system identification

Chen, S., Liu, K., Yang, Y., Xu, Y., Lee, S., Lindquist, M., Caffo, B. S. & Vogelstein, J. T., Jan 15 2017, In : Pattern Recognition Letters. 86, p. 76-81 6 p.

Research output: Contribution to journalArticle

A no-gold-standard technique for objective assessment of quantitative nuclear-medicine imaging methods

Jha, A. K., Caffo, B. S. & Frey, E., Mar 15 2016, In : Physics in Medicine and Biology. 61, 7, p. 2780-2801 22 p.

Research output: Contribution to journalArticle

A parcellation based nonparametric algorithm for independent component analysis with application to fMRI data

Li, S., Chen, S., Yue, C. & Caffo, B. S., 2016, In : Frontiers in Neuroscience. 10, JAN, 15.

Research output: Contribution to journalArticle

A Phase 1 Randomized, Blinded Comparison of the Pharmacokinetics and Colonic Distribution of Three Candidate Rectal Microbicide Formulations of Tenofovir 1% Gel with Simulated Unprotected Sex (CHARM-02)

Hiruy, H., Fuchs, E., Marzinke, M. A., Bakshi, R., Breakey, J. C., Aung, W. S., Manohar, M., Yue, C., Caffo, B. S., Du, Y., Abebe, K. Z., Spiegel, H. M. L., Rohan, L. C., McGowan, I. & Hendrix, C., Nov 1 2015, In : AIDS Research and Human Retroviruses. 31, 11, p. 1098-1108 11 p.

Research output: Contribution to journalArticle

A prospective evaluation of a protocol for magnetic resonance imaging of patients with implanted cardiac devices

Nazarian, S., Hansford, R., Roguin, A., Goldsher, D., Zviman, M. M., Lardo, A. C., Caffo, B. S., Frick, K., Kraut, M. A., Kamel, I. R., Calkins, H., Berger, R. D., Bluemke, D. A. & Halperin, H. R., Oct 4 2011, In : Annals of Internal Medicine. 155, 7, p. 415-424 10 p.

Research output: Contribution to journalArticle

Ascent-based Monte Carlo expectation-maximization

Caffo, B. S., Jank, W. & Jones, G. L., 2005, In : Journal of the Royal Statistical Society. Series B: Statistical Methodology. 67, 2, p. 235-251 17 p.

Research output: Contribution to journalArticle

Assessing bioequivalence of generic antiepilepsy drugs

Krauss, G., Caffo, B. S., Chang, Y. T., Hendrix, C. & Chuang, K., Aug 2011, In : Annals of Neurology. 70, 2, p. 221-228 8 p.

Research output: Contribution to journalArticle

Assessment of bias in experimentally measured diffusion tensor imaging parameters using SIMEX

Lauzon, C. B., Crainiceanu, C. M., Caffo, B. S. & Landman, B. A., Mar 1 2013, In : Magnetic Resonance in Medicine. 69, 3, p. 891-902 12 p.

Research output: Contribution to journalArticle

Association of social engagement with brain volumes assessed by structural MRI

James, B. D., Glass, T. A., Caffo, B. S., Bobb, J. F., Davatzikos, C., Yousem, D. M. & Schwartz, B. S., 2012, In : Journal of Aging Research. 2012, 512714.

Research output: Contribution to journalArticle

A survey of the likelihood approach to bioequivalence trials

Choi, L., Caffo, B. S. & Rohde, C. A., Dec 30 2008, In : Statistics in Medicine. 27, 24, p. 4874-4894 21 p.

Research output: Contribution to journalArticle

A unifying framework for marginalised random-intercept models of correlated binary outcomes

Swihart, B. J., Caffo, B. S. & Crainiceanu, C. M., 2014, In : International Statistical Review. 82, 2, p. 275-295 21 p.

Research output: Contribution to journalArticle

A user-friendly introduction to link-probit-normal models

Caffo, B. S. & Griswold, M., May 2006, In : American Statistician. 60, 2, p. 139-145 7 p.

Research output: Contribution to journalArticle

Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging

Eloyan, A., Muschelli, J., Nebel, M. B., Liu, H., Han, F., Zhao, T., Barber, A. D., Joel, S., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Aug 30 2012, In : Frontiers in Systems Neuroscience. AUG 2012, p. 1-9 9 p.

Research output: Contribution to journalArticle

Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging

Eloyan, A., Muschelli, J., Nebel, M. B., Liu, H., Han, F., Zhao, T., Barber, A., Joel, S., Pekar, J. J., Mostofsky, S. H. & Caffo, B. S., Jul 31 2012, In : Frontiers in Systems Neuroscience. JULY 2012

Research output: Contribution to journalArticle

Axial 3D gradient-echo imaging for improved multiple sclerosis lesion detection in the cervical spinal cord at 3T

Ozturk, A., Aygun, N., Smith, S. A., Caffo, B. S., Calabresi, P. & Reich, D. S., Apr 2013, In : Neuroradiology. 55, 4, p. 431-439 9 p.

Research output: Contribution to journalArticle

Bayesian inference of a directional brain network model for intracranial EEG data

Zhang, T., Sun, Y., Li, H., Yan, G., Tanabe, S., Miao, R., Wang, Y., Caffo, B. S. & Quigg, M. S., Apr 2020, In : Computational Statistics and Data Analysis. 144, 106847.

Research output: Contribution to journalArticle

Bayesian inference of high-dimensional, cluster-structured ordinary differential equation models with applications to brain connectivity studies

Zhang, T., Yin, Q., Caffo, B. S., Sun, Y. & Boatman-Reich, D., Jun 1 2017, In : Annals of Applied Statistics. 11, 2, p. 868-897 30 p.

Research output: Contribution to journalArticle

Big Data and Neuroimaging

Webb-Vargas, Y., Chen, S., Fisher, A., Mejia, A., Xu, Y., Crainiceanu, C. M., Caffo, B. S. & Lindquist, M., May 22 2017, (Accepted/In press) In : Statistics in Biosciences. p. 1-16 16 p.

Research output: Contribution to journalArticle

Biological parametric mapping accounting for random regressors with regression calibration and model II regression

Yang, X., Lauzon, C. B., Crainiceanu, C. M., Caffo, B. S., Resnick, S. M. & Landman, B. A., Sep 2012, In : NeuroImage. 62, 3, p. 1761-1768 8 p.

Research output: Contribution to journalArticle

Brain volumes as predictors of tDCS effects in primary progressive aphasia

de Aguiar, V., Zhao, Y., Faria, A., Ficek, B., Webster, K. T., Wendt, H., Wang, Z., Hillis, A. E., Onyike, C. U., Frangakis, C., Caffo, B. & Tsapkini, K., Jan 2020, In : Brain and Language. 200, 104707.

Research output: Contribution to journalArticle

Open Access

Characterizing sleep structure using the hypnogram

Swihart, B. J., Caffo, B. S., Bandeen Roche, K. J. & Punjabi, N. M., Aug 15 2008, In : Journal of Clinical Sleep Medicine. 4, 4, p. 349-355 7 p.

Research output: Contribution to journalArticle

Cigarette smoking and nocturnal sleep architecture

Zhang, L., Samet, J., Caffo, B. S. & Punjabi, N. M., Sep 2006, In : American Journal of Epidemiology. 164, 6, p. 529-537 9 p.

Research output: Contribution to journalArticle

Clinical predictors of conduction disease progression in type I myotonic muscular dystrophy

Nazarian, S., Wagner, K. R., Caffo, B. S. & Tomaselli, G. F., Feb 2011, In : PACE - Pacing and Clinical Electrophysiology. 34, 2, p. 171-176 6 p.

Research output: Contribution to journalArticle

Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia

de Aguiar, V., Zhao, Y., Ficek, B. N., Webster, K., Rofes, A., Wendt, H., Frangakis, C., Caffo, B., Hillis, A. E., Rapp, B. & Tsapkini, K., Mar 2020, In : Cortex. 124, p. 66-84 19 p.

Research output: Contribution to journalArticle

Combining hidden Markov models for comparing the dynamics of multiple sleep electroencephalograms

Langrock, R., Swihart, B. J., Caffo, B. S., Punjabi, N. M. & Crainiceanu, C. M., Aug 30 2013, In : Statistics in Medicine. 32, 19, p. 3342-3356 15 p.

Research output: Contribution to journalArticle

Comparing test-retest reliability of dynamic functional connectivity methods

Choe, A., Nebel, M. B., Barber, A. D., Cohen, J. R., Xu, Y., Pekar, J. J., Caffo, B. S. & Lindquist, M., Sep 1 2017, In : NeuroImage. 158, p. 155-175 21 p.

Research output: Contribution to journalArticle

Comparison of proportions for composite endpoints with missing components

Li, X. & Caffo, B. S., Mar 2011, In : Journal of Biopharmaceutical Statistics. 21, 2, p. 271-281 11 p.

Research output: Contribution to journalArticle

Comparison of swab and sponge methodologies for identification of Acinetobacter baumannii from the hospital environment

Thom, K. A., Howard, T., Sembajwe, S., Harris, A. D., Strassle, P., Caffo, B. S., Carroll, K. C. & Johnson, J. K., Jun 2012, In : Journal of Clinical Microbiology. 50, 6, p. 2140-2141 2 p.

Research output: Contribution to journalArticle

Comparison of total hospital-acquired bloodstream infections to central line-associated bloodstream infections and implications for outcome measures in infection control

Leekha, S., Li, S., Thom, K. A., Anne Preas, M., Caffo, B. S., Morgan, D. J. & Harris, A. D., Sep 2013, In : Infection Control and Hospital Epidemiology. 34, 9, p. 984-986 3 p.

Research output: Contribution to journalArticle

Computerised lung sound analysis to improve the specificity of paediatric pneumonia diagnosis in resource-poor settings: Protocol and methods for an observational study

Ellington, L. E., Gilman, R. H., Tielsch, J. M., Steinhoff, M., Figueroa, D., Rodriguez, S., Caffo, B. S., Tracey, B., Elhilali, M., West, J. & Checkley, W., 2012, In : BMJ Open. 2, 1, 000506.

Research output: Contribution to journalArticle

Connectivity supporting attention in children with attention deficit hyperactivity disorder

Barber, A. D., Jacobson, L. A., Wexler, J. L., Nebel, M. B., Caffo, B. S., Pekar, J. J. & Mostofsky, S. H., 2015, In : NeuroImage: Clinical. 7, p. 68-81 14 p.

Research output: Contribution to journalArticle

Correction to "Easy Multiplicity Control in Equivalence Testing Using Two One-Sided Tests"

Caffo, B. S., Lauzon, C. & Röhmel, J., May 2013, In : American Statistician. 67, 2, p. 115-116 2 p.

Research output: Contribution to journalArticle