Alexander Favorov

Research Associate

19992019
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  • 21 Similar Profiles
Multiple Sclerosis Medicine & Life Sciences
Genes Medicine & Life Sciences
Alleles Medicine & Life Sciences
Genome Medicine & Life Sciences
Binding Sites Medicine & Life Sciences
Genetic Predisposition to Disease Medicine & Life Sciences
Genome-Wide Association Study Medicine & Life Sciences
Pharmacogenetics Medicine & Life Sciences

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Research Output 1999 2019

  • 97 Article
  • 2 Conference contribution
  • 1 Comment/debate
  • 1 Review article

Allele-specific nonstationarity in evolution of influenza A virus surface proteins

Popova, A. V., Safina, K. R., Ptushenko, V. V., Stolyarova, A. V., Favorov, A. V., Neverov, A. D. & Bazykin, G. A., Oct 15 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21104-21112 9 p.

Research output: Contribution to journalArticle

Open Access
Influenza A virus
Membrane Proteins
Alleles
Herd Immunity
Amino Acids

Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers

Ando, M., Saito, Y., Xu, G., Bui, N. Q., Medetgul-Ernar, K., Pu, M., Fisch, K., Ren, S., Sakai, A., Fukusumi, T., Liu, C., Haft, S., Pang, J., Mark, A., Gaykalova, D., Guo, T., Favorov, A., Yegnasubramanian, S., Fertig, E., Ha, P. & 5 others, Tamayo, P., Yamasoba, T., Ideker, T., Messer, K. & Califano, J. A., Dec 1 2019, In : Nature communications. 10, 1, 2188.

Research output: Contribution to journalArticle

Open Access
chromatin
methylation
Transcription Initiation Site
DNA Methylation
Chromatin

Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer

Flam, E. L., Danilova, L., Kelley, D. Z., Stavrovskaya, E., Guo, T., Considine, M., Qian, J., Califano, J. A., Favorov, A., Fertig, E. J. & Gaykalova, D. A., Dec 1 2019, In : Scientific reports. 9, 1, 15034.

Research output: Contribution to journalArticle

Open Access
Gene Expression
Neoplasms
Chromatin
Genes
DNA Methylation

Differential variation analysis enables detection of tumor heterogeneity using single-cell RNA-sequencing data

Davis-Marcisak, E. F., Sherman, T. D., Orugunta, P., Stein-O'Brien, G. L., Puram, S. V., Roussos Torres, E., Hopkins, A. C., Jaffee, E., Favorov, A., Afsari, B., Goff, L. & Fertig, E., Oct 1 2019, In : Cancer Research. 79, 19, p. 5102-5112 11 p.

Research output: Contribution to journalArticle

RNA Sequence Analysis
Neoplasms
Neoplasm Metastasis
Gene Expression
Tumor Microenvironment

Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers (Nature Communications, (2019), 10, 1, (2188), 10.1038/s41467-019-09937-w)

Ando, M., Saito, Y., Xu, G., Bui, N. Q., Medetgul-Ernar, K., Pu, M., Fisch, K., Ren, S., Sakai, A., Fukusumi, T., Liu, C., Haft, S., Pang, J., Mark, A., Gaykalova, D., Guo, T., Favorov, A., Yegnasubramanian, S., Fertig, E., Ha, P. & 5 others, Tamayo, P., Yamasoba, T., Ideker, T., Messer, K. & Califano, J. A., Dec 1 2019, In : Nature communications. 10, 1, 2415.

Research output: Contribution to journalComment/debate

Open Access
chromatin
methylation
Transcription Initiation Site
DNA Methylation
medicine