Whiting School of Engineering

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2013

Atlas based intensity transformation of brain MR images

Roy, S., Jog, A., Carass, A. & Prince, J. L., Sep 5 2013, Multimodal Brain Image Analysis - Third International Workshop, MBIA 2013, Held in Conjunction with MICCAI 2013, Proceedings. p. 51-62 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8159 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automated anatomical labeling of the cerebral arteries using belief propagation

Bilgel, M., Roy, S., Carass, A., Nyquist, P. A. & Prince, J. L., Jun 3 2013, Medical Imaging 2013: Image Processing. 866918. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automated segmentation of the cerebellar lobules using boundary specific classification and evolution

Bogovic, J. A., Bazin, P. L., Ying, S. H. & Prince, J. L., Jul 12 2013, Information Processing in Medical Imaging - 23rd International Conference, IPMI 2013, Proceedings. p. 62-73 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7917 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automatic cell segmentation in fluorescence images of conuent cell monolayers using multi-object geometric deformable model

Yang, Z., Bogovic, J. A., Carass, A., Ye, M., Searson, P. C. & Prince, J. L., Jun 3 2013, Medical Imaging 2013: Image Processing. 866904. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex

Yang, Z., Carass, A. & Prince, J. L., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 1018-1021 4 p. 6556650. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deformable registration of macular oct using a-mode scan similarity

Chen, M., Lang, A., Sotirchos, E., Ying, H. S., Calabresi, P. A., Prince, J. L. & Carass, A., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 476-479 4 p. 6556515. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Design of 3-DOF force sensing micro-forceps for robot assisted vitreoretinal surgery

Gonenc, B., Handa, J., Gehlbach, P., Taylor, R. H. & Iordachita, I., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 5686-5689 4 p. 6610841. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Improvement of optical coherence tomography using active handheld micromanipulator in vitreoretinal surgery

Yang, S., Balicki, M., Wells, T. S., Maclachlan, R. A., Liu, X., Kang, J. U., Handa, J. T., Taylor, R. H. & Riviere, C. N., Oct 31 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2013. p. 5674-5677 4 p. 6610838. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Interactive OCT annotation and visualization for vitreoretinal surgery

Balicki, M., Richa, R., Vagvolgyi, B., Kazanzides, P., Gehlbach, P., Handa, J., Kang, J. & Taylor, R., Oct 23 2013, Augmented Environments for Computer-Assisted Interventions - 7th International Workshop, AE-CAI 2012, Held in Conjunction with MICCAI 2012, Revised Selected Papers. p. 142-152 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7815 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Longitudinal intensity normalization in the presence of multiple sclerosis lesions

Roy, S., Carass, A., Shiee, N., Pham, D. L., Calabresi, P., Reich, D. & Prince, J. L., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 1384-1387 4 p. 6556791. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Longitudinal intensity normalization of magnetic resonance images using patches

Roy, S., Carass, A. & Prince, J. L., Jun 3 2013, Medical Imaging 2013: Image Processing. 86691J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Loss of giant obscurins promotes a metastatic phenotype in breast epithelium

Stroka, K. M., Shriver, M., Konstantopoulos, K. & Kontrogianni-Konstantopoulos, A., Jan 1 2013, Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, 1 p. (Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance image synthesis through patch regression

Jog, A., Roy, S., Carass, A. & Prince, J. L., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 350-353 4 p. 6556484. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Model-based cone-beam CT reconstruction for image-guided minimally invasive treatment of hip osteolysis

Otake, Y., Stayman, J. W., Zbijewski, W., Murphy, R. J., Kutzer, M. D., Taylor, R. H., Siewerdsen, J. H. & Armand, M., Jun 10 2013, Medical Imaging 2013: Image-Guided Procedures, Robotic Interventions, and Modeling. 86710Y. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8671).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

MRI analysis of 3D normal and post-glossectomy tongue motion in speech

Xing, F., Murano, E. Z., Lee, J., Woo, J., Stone, M. & Prince, J. L., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 816-819 4 p. 6556600. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Parcellation of the thalamus using diffusion tensor images and a multi-object geometric deformable model

Ye, C., Bogovic, J. A., Ying, S. H. & Prince, J. L., Jun 3 2013, Medical Imaging 2013: Image Processing. 866909. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Patch based intensity normalization of brain MR images

Roy, S., Carass, A. & Prince, J. L., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 342-345 4 p. 6556482. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pulse sequence based multi-acquisition MR intensity normalization

Jog, A., Roy, S., Carass, A. & Prince, J. L., Jun 3 2013, Medical Imaging 2013: Image Processing. 86692H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robust object tracking in crowd dynamic scenes using explicit stereo depth

Li, C., Lu, L., Hager, G. D., Tang, J. & Wang, H., Jan 1 2013, Computer Vision, ACCV 2012 - 11th Asian Conference on Computer Vision, Revised Selected Papers. PART 3 ed. Springer Verlag, p. 71-85 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7726 LNCS, no. PART 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Role of water permeation in confined cell migration and polarization

Stroka, K. M., Jiang, H., Sun, S. X. & Konstantopoulos, K., Jan 1 2013, Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future. AIChE, p. 600-601 2 p. (Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area at the 2013 AIChE Annual Meeting: Global Challenges for Engineering a Sustainable Future).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Segmentation of retinal OCT images using a random forest classifier

Lang, A., Carass, A., Sotirchos, E., Calabresi, P. & Prince, J. L., Jun 3 2013, Medical Imaging 2013: Image Processing. 86690R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Segmentation of the complete superior cerebellar peduncles using a multi-object geometric deformable model

Ye, C., Bogovic, J. A., Ying, S. H. & Prince, J. L., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 49-52 4 p. 6556409. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semi-automatic segmentation of the tongue for 3D motion analysis with dynamic MRI

Lee, J., Woo, J., Xing, F., Murano, E. Z., Stone, M. & Prince, J. L., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 1465-1468 4 p. 6556811. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensing and three-dimensional imaging of cochlea and surrounding temporal bone using swept source high-speed optical coherence tomography

Zhao, M., Chien, W. W., Taylor, R., Iordachita, I., Huang, Y., Niparko, J. & Kang, J. U., May 22 2013, Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVII. 857121. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8571).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensing and three-dimensional OCT imaging of the cochlea and temporal bone: Image-guided cochlear implantation

Zhao, M., Chien, W. W., Iordachita, I., Huang, Y., Taylor, R., Niparko, J. & Kang, J. U., May 30 2013, Photonic Therapeutics and Diagnostics IX. 85651U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8565).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

String motif-based description of tool motion for detecting skill and gestures in robotic surgery

Ahmidi, N., Gao, Y., Béjar, B., Vedula, S. S., Khudanpur, S., Vidal, R. & Hager, G. D., Oct 23 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 1 ed. p. 26-33 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8149 LNCS, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgical gesture segmentation and recognition

Tao, L., Zappella, L., Hager, G. D. & Vidal, R., Oct 24 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 3 ed. p. 339-346 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8151 LNCS, no. PART 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Thalamic parcellation from multi-modal data using random forest learning

Stough, J. V., Ye, C., Ying, S. H. & Prince, J. L., Aug 22 2013, ISBI 2013 - 2013 IEEE 10th International Symposium on Biomedical Imaging: From Nano to Macro. p. 852-855 4 p. 6556609. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Voxel-wise displacement as independent features in classification of multiple sclerosis

Chen, M., Carass, A., Reich, D. S., Calabresi, P. A., Pham, D. & Prince, J. L., Jun 3 2013, Medical Imaging 2013: Image Processing. 86690K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

A clinical pilot study of a modular video-CT augmentation system for image-guided skull base surgery

Liu, W. P., Mirota, D. J., Uneri, A., Otake, Y., Hager, G., Reh, D. D., Ishii, M., Gallia, G. L. & Siewerdsen, J. H., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 831633. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A fiber tracking method guided by volumetric tract segmentation

Ye, C., Bazin, P. L., Ying, S. H. & Prince, J. L., Apr 24 2012, 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, MMBIA 2012. p. 137-142 6 p. 6164744. (Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Assessing 3D tunnel position in ACL reconstruction using a novel single image 3D-2D registration

Kang, X., Yau, W. P., Otake, Y., Cheung, P. Y. S., Hu, Y. & Taylor, R. H., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 831628. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A system for 3D ultrasound-guided robotic retrieval of foreign bodies from a beating heart

Thienphrapa, P., Ramachandran, B., Taylor, R. H. & Popovic, A., Oct 18 2012, 2012 4th IEEE RAS and EMBS International Conference on Biomedical Robotics and Biomechatronics, BioRob 2012. p. 743-748 6 p. 6290256. (Proceedings of the IEEE RAS and EMBS International Conference on Biomedical Robotics and Biomechatronics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automatic sulcal curve extraction with MRF based shape prior

Yang, Z., Carass, A. & Prince, J. L., Aug 15 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 418-421 4 p. 6235573. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Color-based hybrid reconstruction for endoscopy

Tokgozoglu, H. N., Meisner, E. M., Kazhdan, M. & Hager, G. D., Aug 20 2012, 2012 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2012. p. 8-15 8 p. 6239241. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data-driven visual tracking in retinal microsurgery

Sznitman, R., Ali, K., Richa, R., Taylor, R. H., Hager, G. & Fua, P., 2012, Medical Image Computing and Computer-Assisted Intervention - MICCAI2012 - 15th International Conference, Proceedings. Springer Verlag, Vol. 7511 LNCS. p. 568-575 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7511 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deformable registration of the inflated and deflated lung for cone-beam CT-guided thoracic surgery

Uneri, A., Nithiananthan, S., Schafer, S., Otake, Y., Stayman, J. W., Kleinszig, G., Sussman, M. S., Taylor, R. H., Prince, J. L. & Siewerdsen, J. H., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 831602. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Direct 3D ultrasound to video registration using photoacoustic effect

Cheng, A., Kang, J. U., Taylor, R. H. & Boctor, E. M., 2012, Medical Image Computing and Computer-Assisted Intervention - MICCAI2012 - 15th International Conference, Proceedings. Lu, L., Menze, B. H., Tu, Z., Criminisi, A., Ayache, N., Delingette, H., Montillo, A., Langs, G., Menze, B. H., Langs, G., Golland, P. & Mori, K. (eds.). Springer Verlag, p. 552-559 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7511 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Enabling technologies for natural orifice transluminal endoscopic surgery (N.O.T.E.S) using robotically guided elasticity imaging

Şen, H. T., Deshmukh, N., Goldman, R., Kazanzides, P., Taylor, R. H., Boctor, E. & Simaan, N., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 83161Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evaluation, optimization, and verification of the wrist mechanism of a new cooperatively controlled bimanual ENT microsurgery robot

He, C., Olds, K., Akst, L. M., Ishii, M., Chien, W. W., Iordachita, I. & Taylor, R., Dec 1 2012, ASME 2012 International Mechanical Engineering Congress and Exposition, IMECE 2012. p. 155-164 10 p. (ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE); vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Finding seeds for segmentation using statistical fusion

Xing, F., Asman, A. J., Prince, J. L. & Landman, B. A., May 14 2012, Medical Imaging 2012: Image Processing. 831430. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8314).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Force sensing micro-forceps for robot assisted retinal surgery

Kuru, I., Gonenc, B., Balicki, M., Handa, J., Gehlbach, P., Taylor, R. H. & Iordachita, I., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 1401-1404 4 p. 6346201. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Force sensing micro-forceps with integrated fiber Bragg grating for vitreoretinal surgery

He, X., Balicki, M. A., Kang, J. U., Gehlbach, P. L., Handa, J. T., Taylor, R. H. & Iordachitaa, I. I., Jun 13 2012, Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XII. 82180W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8218).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fully automatic segmentation of the dentate nucleus using diffusion weighted images

Ye, C., Bogovic, J. A., Bazin, P. L., Prince, J. L. & Ying, S. H., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 1128-1131 4 p. 6235758. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hybrid tracking and mosaicking for information augmentation in retinal surgery

Richa, R., Vágvölgyi, B., Balicki, M., Hager, G. D. & Taylor, R. H., Jan 1 2012, Medical Image Computing and Computer-Assisted Intervention, MICCAI2012 - 15th International Conference, Proceedings. Ayache, N., Delingette, H., Golland, P. & Mori, K. (eds.). Springer Verlag, p. 397-404 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7510 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Incorporation of prior knowledge for region of change imaging from sparse scan data in image-guided surgery

Lee, J., Stayman, J. W., Otake, Y., Schafer, S., Zbijewski, W., Khanna, A. J., Prince, J. L. & Siewerdsen, J. H., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 831603. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intraoperative ultrasound to stereocamera registration using interventional photoacoustic imaging

Vyas, S., Su, S., Kim, R., Kuo, N., Taylor, R. H., Kang, J. U. & Boctor, E. M., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 83160S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Labeling of the cerebellar peduncles using a supervised Gaussian classifier with volumetric tract segmentation

Ye, C., Bazin, P. L., Bogovic, J. A., Ying, S. H. & Prince, J. L., May 14 2012, Medical Imaging 2012: Image Processing. 831447. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8314).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical robotics and computer-integrated interventional medicine

Taylor, R. H., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 83160D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Miniature fiber-optic force sensor for vitreoretinal microsurgery based on low-coherence Fabry-Pérot interferometry

Liu, X., Iordachita, I. I., He, X., Taylor, R. H. & Kang, J. U., Jun 13 2012, Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XII. 82180O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8218).

Research output: Chapter in Book/Report/Conference proceedingConference contribution