Whiting School of Engineering

Research Output

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Conference contribution
2016

Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling

Ellingsen, L. M., Roy, S., Carass, A., Blitz, A. M., Pham, D. L. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97840G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Segmentation of thalamus from MR images via task-driven dictionary learning

Liu, L., Glaister, J., Sun, X., Carass, A., Tran, T. D. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97843H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semi-autonomous telerobotic assembly over high-latency networks

Bohren, J., Paxton, C., Howarth, R., Hager, G. & Whitcomb, L. L., Apr 12 2016, ACM/IEEE International Conference on Human-Robot Interaction. IEEE Computer Society, Vol. 2016-April. p. 149-156 8 p. 7451746

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensor substitution for video-based action recognition

Rupprecht, C., Lea, C., Tombari, F., Navab, N. & Hager, G., Nov 28 2016, IROS 2016 - 2016 IEEE/RSJ International Conference on Intelligent Robots and Systems. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-November. p. 5230-5237 8 p. 7759769

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes

Antony, B. J., Lang, A., Swingle, E. K., Al-Louzi, O., Carass, A., Solomon, S., Calabresi, P., Saidha, S. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97841C

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgical fiducial segmentation and tracking for pose estimation based on ultrasound B-mode images

Chen, L., Kuo, N., Aalamifar, F., Narrow, D., O'Brien-Coon, D., Prince, J. L. & Boctor, E., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 1244-1247 4 p. 7590931

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Temporal convolutional networks: A unified approach to action segmentation

Lea, C., Vidal, R., Reiter, A. & Hager, G., 2016, Computer Vision – ECCV 2016 Workshops, Proceedings. Springer Verlag, Vol. 9915 LNCS. p. 47-54 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9915 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors

Glaister, J., Carass, A., Stough, J. V., Calabresi, P. & Prince, J. L., 2016, Medical Imaging 2016: Image Processing. SPIE, Vol. 9784. 97843J

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ultrasound to video registration using a bi-plane transrectal probe with photoacoustic markers

Cheng, A., Kang, H. J., Zhang, H. K., Kang, J. U., Taylor, R. H. & Boctor, E., 2016, Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 9786. 97860J

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Unsupervised surgical data alignment with application to automatic activity annotation

Gao, Y., Vedula, S. S., Lee, G. I., Lee, M. R., Khudanpur, S. & Hager, G., Jun 8 2016, 2016 IEEE International Conference on Robotics and Automation, ICRA 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-June. p. 4158-4163 6 p. 7487608

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Updating virtual fixtures from exploration data in force-controlled model-based telemanipulation

Wang, L., Chen, Z., Chalasani, P., Pile, J., Kazanzides, P., Taylor, R. H. & Simaan, N., 2016, 40th Mechanisms and Robotics Conference. American Society of Mechanical Engineers (ASME), Vol. 5A-2016.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Virtual fixture assistance for needle passing and knot tying

Chen, Z., Malpani, A., Chalasani, P., Deguet, A., Vedula, S. S., Kazanzides, P. & Taylor, R. H., Nov 28 2016, IROS 2016 - 2016 IEEE/RSJ International Conference on Intelligent Robots and Systems. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-November. p. 2343-2350 8 p. 7759365

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Voxel based morphometry in optical coherence tomography: Validation & core findings

Antony, B. J., Chen, M., Carass, A., Jedynak, B. M., Al-Louzi, O., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., 2016, Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, 97880P. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9788).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging

Xing, F., Prince, J. L., Stone, M., Wedeen, V. J., El Fakhri, G. & Woo, J., 2017, Medical Imaging 2017: Image Processing. Angelini, E. D., Styner, M. A. & Angelini, E. D. (eds.). SPIE, 101331H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10133).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A highly sensitive fiber Bragg Grating shape sensor for continuum manipulators with large deflections

Sefati, S., Pozin, M., Alambeigi, F., Iordachita, I., Taylor, R. H. & Armand, M., Dec 21 2017, IEEE SENSORS 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-December. p. 1-3 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A supervoxel based random forest synthesis framework for bidirectional MR/CT synthesis

Zhao, C., Carass, A., Lee, J., Jog, A. & Prince, J. L., Jan 1 2017, Simulation and Synthesis in Medical Imaging - 2nd International Workshop, SASHIMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, p. 33-40 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10557 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, 101371D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10137).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Catheter tracking in an interventional photoacoustic surgical system

Cheng, A., Itsarachaiyot, Y., Kim, Y., Zhang, H. K., Taylor, R. H. & Boctor, E., 2017, Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135. 1013527

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J., 2017, Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138. 1013813

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Combining neural networks and tree search for task and motion planning in challenging environments

Paxton, C., Raman, V., Hager, G. & Kobilarov, M., Dec 13 2017, IROS 2017 - IEEE/RSJ International Conference on Intelligent Robots and Systems. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-September. p. 6059-6066 8 p. 8206505

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Co-robotic ultrasound imaging: A cooperative force control approach

Finocchi, R., Aalamifar, F., Fang, T. Y., Taylor, R. H. & Boctor, E., 2017, Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135. 1013510

Research output: Chapter in Book/Report/Conference proceedingConference contribution

CoSTAR: Instructing collaborative robots with behavior trees and vision

Paxton, C., Hundt, A., Jonathan, F., Guerin, K. & Hager, G., Jul 21 2017, ICRA 2017 - IEEE International Conference on Robotics and Automation. Institute of Electrical and Electronics Engineers Inc., p. 564-571 8 p. 7989070

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deep supervision with shape concepts for occlusion-aware 3D object parsing

Li, C., Zia, M. Z., Tran, Q. H., Yu, X., Hager, G. D. & Chandraker, M., Nov 6 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017. Institute of Electrical and Electronics Engineers Inc., p. 388-397 10 p. (Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Falx cerebri segmentation via multi-atlas boundary fusion

Glaister, J., Carass, A., Pham, D., Butman, J. A. & Prince, J. L., Jan 1 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M., Duchesne, S., Franz, A., Jannin, P., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 92-99 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber orientation estimation guided by a deep network

Ye, C. & Prince, J. L., Jan 1 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M., Duchesne, S., Franz, A., Jannin, P., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 575-583 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients

Lang, A., Carass, A., Bittner, A. K., Ying, H. S. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371M

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Incompressible phase registration for motion estimation from tagged magnetic resonance images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L., 2017, Reconstruction, Segmentation, and Analysis of Medical Images - 1st International Workshops, RAMBO 2016 and HVSMR 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Zuluaga, M. A., Moghari, M. H., Pace, D. F., Kainz, B. & Bhatia, K. (eds.). Springer Verlag, p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10129 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning in an Uncertain World: Representing Ambiguity Through Multiple Hypotheses

Rupprecht, C., Laina, I., Dipietro, R., Baust, M., Tombari, F., Navab, N. & Hager, G. D., Dec 22 2017, Proceedings - 2017 IEEE International Conference on Computer Vision, ICCV 2017. Institute of Electrical and Electronics Engineers Inc., p. 3611-3620 10 p. 8237650. (Proceedings of the IEEE International Conference on Computer Vision; vol. 2017-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Localization of subsurface photoacoustic fiducials for intraoperative guidance

Cheng, A., Zhang, H. K., Kang, J. U., Taylor, R. H. & Boctor, E., 2017, Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XV. SPIE, Vol. 10054. 100541D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Longitudinal analysis of mouse SDOCT volumes

Antony, B. J., Carass, A., Lang, A., Kim, B. J., Zack, D. J. & Prince, J. L., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning

Lee, J., Carass, A., Jog, A., Zhao, C. & Prince, J. L., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331I

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Safe tissue manipulation in retinal microsurgery via motorized instruments with force sensing

Gonenc, B., Gehlbach, P., Taylor, R. H. & Iordachita, I., Dec 21 2017, IEEE SENSORS 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (Proceedings of IEEE Sensors; vol. 2017-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Simulation and synthesis in medical imaging: Second international workshop, SASHIMI 2017 held in conjunction with MICCAI 2017 Québec city, QC, Canada, September 10, 2017 proceedings

Tsaftaris, S. A., Gooya, A., Frangi, A. F. & Prince, J. L., Jan 1 2017, Simulation and Synthesis in Medical Imaging - 2nd International Workshop, SASHIMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Gooya, A., Frangi, A. F., Tsaftaris, S. A. & Prince, J. L. (eds.). Springer Verlag, (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10557 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Simultaneous segmentation and correspondence improvement using statistical modes

Sinha, A., Reiter, A., Leonard, S., Ishii, M., Hager, G. & Taylor, R. H., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101331B

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Software architecture of the da vinci research kit

Chen, Z., Deguet, A., Taylor, R. H. & Kazanzides, P., May 11 2017, Proceedings - 2017 1st IEEE International Conference on Robotic Computing, IRC 2017. Institute of Electrical and Electronics Engineers Inc., p. 180-187 8 p. 7926536

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tactile object recognition and localization using spatially-varying appearance

Pezzementi, Z. & Hager, G. D., Jan 1 2017, Robotics Research - The 15th International Symposium ISRR. Christensen, H. I. & Khatib, O. (eds.). Springer Verlag, p. 201-217 17 p. (Springer Tracts in Advanced Robotics; vol. 100).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Temporal convolutional networks for action segmentation and detection

Lea, C., Flynn, M. D., Vidal, R., Reiter, A. & Hager, G. D., Nov 6 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017. Institute of Electrical and Electronics Engineers Inc., p. 1003-1012 10 p. (Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Test suite for image-based motion estimation of the brain and tongue

Ramsey, J., Prince, J. L. & Gomez, A., 2017, Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137. 101371G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The triggering, curving and stopping of excitable waves during cell migration

Bhattacharya, S. & Iglesias, P. A., May 10 2017, 2017 51st Annual Conference on Information Sciences and Systems, CISS 2017. Institute of Electrical and Electronics Engineers Inc., 7926103

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Towards topological correct segmentation of macular OCT from cascaded FCNs

He, Y., Carass, A., Yun, Y., Zhao, C., Jedynak, B. M., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., 2017, Fetal, Infant and Ophthalmic Medical Image Analysis - International Workshop, FIFI 2017 and 4th International Workshop, OMIA 2017 Held in Conjunction with MICCAI 2017, Proceedings. Cardoso, M. J. & Arbel, T. (eds.). Springer Verlag, p. 202-209 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10554 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Treatment-response models for counterfactual reasoning with continuous-time, continuous-valued interventions

Soleimani, H., Subbaswamy, A. & Saria, S., 2017, Uncertainty in Artificial Intelligence - Proceedings of the 33rd Conference, UAI 2017. AUAI Press Corvallis

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Whole brain parcellation with pathology: Validation on ventriculomegaly patients

Carass, A., Shao, M., Li, X., Dewey, B. E., Blitz, A. M., Roy, S., Pham, D., Prince, J. L. & Ellingsen, L. M., 2017, Patch-Based Techniques in Medical Imaging - 3rd International Workshop, Patch-MI 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10530 LNCS. p. 20-28 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10530 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Whole brain segmentation and labeling from CT using synthetic MR images

Zhao, C., Carass, A., Lee, J., He, Y. & Prince, J. L., Jan 1 2017, Machine Learning in Medical Imaging - 8th International Workshop, MLMI 2017, Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, p. 291-298 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10541 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

2D Modeling and Correction of Fan-Beam Scan Geometry in OCT

Chen, M., Gee, J. C., Prince, J. L. & Aguirre, G. K., Jan 1 2018, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Bogunovic, H., Snead, D., Garvin, M. K., Chen, X. J., Ciompi, F., Xu, Y., Maier-Hein, L., Veta, M., Trucco, E., Stoyanov, D., Rajpoot, N., van der Laak, J., Martel, A. & McKenna, S. (eds.). Springer Verlag, p. 328-335 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11039 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A computational framework for complementary situational awareness (CSA) in surgical assistant robots

Chalasani, P., Deguet, A., Kazanzides, P. & Taylor, R. H., Apr 2 2018, Proceedings - 2nd IEEE International Conference on Robotic Computing, IRC 2018. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 9-16 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A deep learning based anti-aliasing self super-resolution algorithm for MRI

Zhao, C., Carass, A., Dewey, B. E., Woo, J., Oh, J., Calabresi, P. A., Reich, D. S., Sati, P., Pham, D. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Schnabel, J. A., Davatzikos, C., Alberola-López, C., Fichtinger, G. & Frangi, A. F. (eds.). Springer Verlag, p. 100-108 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Adversarial deep structured nets for mass segmentation from mammograms

Zhu, W., Xiang, X., Tran, T. D., Hager, G. D. & Xie, X., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 847-850 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A novel filtering approach for 3D harmonic phase analysis of tagged MRI

Wang, X., Stone, M. L., Prince, J. L. & Gomez, A. D., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 1057414. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10574).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Unified Framework for Multi-view Multi-class Object Pose Estimation

Li, C., Bai, J. & Hager, G. D., 2018, Computer Vision – ECCV 2018 - 15th European Conference, 2018, Proceedings. Weiss, Y., Ferrari, V., Sminchisescu, C. & Hebert, M. (eds.). Springer Verlag, p. 263-281 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11220 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution