Whiting School of Engineering

Research Output

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2008

A multi-compartment segmentation framework with homeomorphic level sets

Fan, X., Bazin, P. L. & Prince, J. L., Sep 26 2008, 26th IEEE Conference on Computer Vision and Pattern Recognition, CVPR. 4587475. (26th IEEE Conference on Computer Vision and Pattern Recognition, CVPR).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A multiple geometric deformable model framework for homeomorphic 3D medical image segmentation

Fan, X., Bazin, P. L., Bogovic, J., Bai, Y. & Prince, J. L., Sep 22 2008, 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops. 4563013. (2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

ASSIST - Automated system for surgical instrument and sponge tracking

Rivera, N., Mountain, R., Assumpco, L., Williams, A. A., Cooper, A. B., Lewis, D. L., Benson, R. C., Miragliotta, J. A., Marohn, M. & Taylor, R. H., Aug 14 2008, 2008 IEEE International Conference on RFID (Frequency Identification), IEEE RFID 2008. p. 297-302 6 p. 4519358. (2008 IEEE International Conference on RFID (Frequency Identification), IEEE RFID 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automated reliable labeling of the cortical surface

Wan, J., Carass, A., Resnick, S. M. & Prince, J. L., 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. p. 440-443 4 p. 4541027. (2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automatically identifying white matter tracts using cortical labels

Bogovic, J. A., Carass, A., Wan, J., Landman, B. A. & Prince, J. L., 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. p. 895-898 4 p. 4541141. (2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automatic recognition of surgical motions using statistical modeling for capturing variability

Reiley, C. E., Lin, H. C., Varadarajan, B., Vagvolgyi, B., Khudanpur, S., Yuh, D. D. & Hager, G. D., Jan 1 2008, Medicine Meets Virtual Reality 16 - Parallel, Combinatorial, Convergent: NextMed by Design, MMVR 2008. IOS Press, p. 396-401 6 p. (Studies in Health Technology and Informatics; vol. 132).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Comparison of computational load of a simple and complex electrophysiological cell models in large anatomical data-sets on the Blue Gene/L supercomputer

Reumann, M., Fitch, B. G., Rayshubskiy, A., Keller, D. U. J., Weiss, D. L., Seemann, G., Dössel, O., Pitman, M. C. & Rice, J. J., Dec 1 2008, WMSCI 2008 - The 12th World Multi-Conference on Systemics, Cybernetics and Informatics, Jointly with the 14th International Conference on Information Systems Analysis and Synthesis, ISAS 2008 - Proc.. p. 139-141 3 p. (WMSCI 2008 - The 12th World Multi-Conference on Systemics, Cybernetics and Informatics, Jointly with the 14th International Conference on Information Systems Analysis and Synthesis, ISAS 2008 - Proc.; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational predictions of the enzymatic activity of single deletion mutants

Berrondo, M. & Gray, J., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Control methods for guidance virtual fixtures in compliant human-machine interfaces

Marayong, P., Hager, G. D. & Okamura, A. M., Dec 1 2008, 2008 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS. p. 1166-1172 7 p. 4650838. (2008 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cooperative robot assistant for retinal microsurgery

Fleming, I., Balicki, M., Koo, J., Iordachita, I., Mitchell, B., Handa, J., Hager, G. & Taylor, R., Dec 1 2008, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008 - 11th International Conference, Proceedings. PART 2 ed. p. 543-550 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5242 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

CTREC: C-arm tracking and reconstruction using elliptic curves

Chintalapani, G., Jain, A. K., Burkhardt, D. H., Prince, J. L. & Fichtinger, G., Sep 22 2008, 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops. 4563029. (2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Error estimates and communication overhead in the computation of the bidomain equations on the distributed memory parallel blue gene/L supercomputer

Reumann, M., Fitch, B. G., Rayshubskiy, A., Weiss, D. L., Seemann, G., Doessel, O., Pitman, M. C. & Rice, J. J., Dec 1 2008, Computers in Cardiology 2008, CAR. p. 81-84 4 p. 4748982. (Computers in Cardiology; vol. 35).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fibrin(ogen) is a functional CD44 ligand

Alves, C. S., Yakovlev, S., Medved, L. & Konstantopoulos, K., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fuzzy c-means with variable compactness

Roy, S., Agarwal, H., Carass, A., Bai, Y., Pham, D. L. & Prince, J. L., Sep 10 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. p. 452-455 4 p. 4541030. (2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

High-resolution adsorbed and solution-state ensembles of a naturally evolved biomineralization protein: Blind and nmr-guided predictions

Masica, D. & Gray, J. J., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

High-resolution homology modeling of antibody fv regions and application to antibody-antigen docking

Sivasubramanian, A., Sircar, A., Chaudhury, S. & Gray, J. J., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Large scale cardiac modeling on the Blue Gene supercomputer

Reumann, M., Fitch, B. G., Rayshubskiy, A., Keller, D. U., Weiss, D. L., Seemann, G., Dössel, O., Pitman, M. C. & Rice, J. J., Dec 1 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. p. 577-580 4 p. 4649218. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Localization of pelvic anatomical coordinate system using US/atlas registration for total hip replacement

Foroughi, P., Song, D., Chintalapani, G., Taylor, R. H. & Fichtinger, G., Dec 1 2008, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008 - 11th International Conference, Proceedings. PART 2 ed. p. 871-879 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5242 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical robotics and computer-integrated surgery

Taylor, R. H., Sep 23 2008, Proceedings - 32nd Annual IEEE International Computer Software and Applications Conference, COMPSAC 2008. 1 p. 4591515. (Proceedings - International Computer Software and Applications Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Prostate brachytherapy seed localization with Gaussian blurring and camera self-calibration

Lee, J., Liu, X., Prince, J. L. & Fichtinger, G., Dec 1 2008, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008 - 11th International Conference, Proceedings. PART 2 ed. p. 636-643 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5242 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robust maximum likelihood estimation in Q-space MRI

Landman, B. A., Farrell, J. A. D., Smith, S. A., Calabresi, P. A., Van Zijl, P. C. M. & Prince, J. L., 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. p. 867-870 4 p. 4541134. (2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robust motion estimation and structure recovery from endoscopic image sequences with an adaptive scale Kernel Consensus estimator

Wang, H., Mirota, D., Ishii, M. & Hager, G. D., 2008, 26th IEEE Conference on Computer Vision and Pattern Recognition, CVPR. 4587687. (26th IEEE Conference on Computer Vision and Pattern Recognition, CVPR).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Selective control of mucus mesh size and nanorheology for prevention of infectious diseases

Lai, S. K., Wang, Y. Y., Hida, K., Cone, R., Wirtz, D. & Hanes, J., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spatially-compressed cardiac myofilament models generate hysteresis that is not found in real muscle

Rice, J. J., Tu, Y., Poggesi, C. & De Tombe, P. P., Dec 1 2008, Pacific Symposium on Biocomputing 2008, PSB 2008. p. 366-377 12 p. (Pacific Symposium on Biocomputing 2008, PSB 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tomosynthesis-based radioactive seed localization in prostate brachytherapy using modified distance map images

Lee, J., Liu, X., Jain, A. K., Prince, J. L. & Fichtinger, G., Sep 10 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI. p. 680-683 4 p. 4541087. (2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Towards "real-time" tool-tissue interaction detection in robotically assisted laparoscopy

Voros, S. & Hager, G. D., Dec 1 2008, Proceedings of the 2nd Biennial IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics, BioRob 2008. p. 562-567 6 p. 4762915. (Proceedings of the 2nd Biennial IEEE/RAS-EMBS International Conference on Biomedical Robotics and Biomechatronics, BioRob 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2009

3D structural measurements of the proximal fFemur from 2D DXA images using a statistical atlas

Ahmad, O. M., Ramamurthi, K., Wilson, K. E., Engelke, K., Bouxsein, M. & Taylor, R. H., Jun 15 2009, Medical Imaging 2009: Computer-Aided Diagnosis. 726005. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7260).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Accuracy of localization of prostate lesions using manual palpation and ultrasound elastography

Kuta, C., Schneider, C., -Monroe, N. C., Su, L. M., Boctor, E. & Taylor, R., Jun 19 2009, Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling. 726128. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7261).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Active background modeling: Actors on a stage

Sznitman, R., Lin, H., Gupta, M. & Hager, G., Dec 1 2009, 2009 IEEE 12th International Conference on Computer Vision Workshops, ICCV Workshops 2009. p. 1222-1228 7 p. 5457469. (2009 IEEE 12th International Conference on Computer Vision Workshops, ICCV Workshops 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A meta registration framework for lesion matching

Seshamani, S., Rajan, P., Kumar, R., Girgis, H., Dassopoulos, T., Mullin, G. & Hager, G., Dec 1 2009, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009 - 12th International Conference, Proceedings. PART 1 ed. p. 582-589 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5761 LNCS, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Analysis of Crohn's disease lesions in capsule endoscopy images

Bejakovic, S., Kumar, R., Dassopoulos, T., Mullin, G. & Hager, G., Nov 2 2009, 2009 IEEE International Conference on Robotics and Automation, ICRA '09. p. 2793-2798 6 p. 5152774. (Proceedings - IEEE International Conference on Robotics and Automation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A rician mixture model classification algorithm for magnetic resonance images

Roy, S., Carass, A., Bazin, P. L. & Prince, J. L., Nov 17 2009, Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. p. 406-409 4 p. 5193070. (Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A shape relationship descriptor for radiation therapy planning

Kazhdan, M., Simari, P., McNutt, T., Wu, B., Jacques, R., Chuang, M. & Taylor, R., Dec 1 2009, Medical Image Computing and Computer-Assisted Intervention - MICCAI2009 - 12th International Conference, Proceedings. PART 2 ed. p. 100-108 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5762 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Automated characterization of amoeboid motility

Xiong, Y. & Iglesias, P. A., Oct 12 2009, Proceedings - 43rd Annual Conference on Information Sciences and Systems, CISS 2009. p. 369-370 2 p. 5054747. (Proceedings - 43rd Annual Conference on Information Sciences and Systems, CISS 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automated diagnosis of Barrett's esophagus with endoscopic images

Rajan, P., Canto, M., Gorospe, E., Almario, A., Kage, A., Winter, C., Hager, G., Wittenberg, T. & Münzenmayer, C., Dec 1 2009, World Congress on Medical Physics and Biomedical Engineering: Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics. 4 ed. p. 2189-2192 4 p. (IFMBE Proceedings; vol. 25, no. 4).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Belief propagation based segmentation of white matter tracts in DTI

Bazin, P. L., Bogovic, J., Reich, D., Prince, J. L. & Pham, D. L., Dec 1 2009, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009 - 12th International Conference, Proceedings. PART 1 ed. p. 943-950 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5761 LNCS, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Common-path fourier-domain optical coherence tomography with a fiber optic probe integrated into a surgical needle

Han, J. H., Balicki, M., Zhang, K., Liu, X., Handa, J., Taylor, R. & Kang, J. U., Dec 1 2009, Conference on Lasers and Electro-Optics, CLEO 2009. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Common-path fourier-domain optical coherence tomography with a fiber optic probe integrated into a surgical needle

Han, J. H., Balicki, M., Zhang, K., Liu, X., Handa, J., Taylor, R. & Kang, J. U., 2009, Conference on Lasers and Electro-Optics, CLEO 2009. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Common-path Fourier-domain optical coherence tomography with a fiber optic probe integrated into a surgical needle

Han, J. H., Balicki, M., Zhang, K., Liu, X., Handa, J., Taylor, R. & Kang, J. U., Nov 16 2009, 2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009. 5224449. (2009 Conference on Lasers and Electro-Optics and 2009 Conference on Quantum Electronics and Laser Science Conference, CLEO/QELS 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data-derived models for segmentation with application to surgical assessment and training

Varadarajan, B., Reiley, C., Lin, H., Khudanpur, S. & Hager, G., Dec 1 2009, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009 - 12th International Conference, Proceedings. PART 1 ed. p. 426-434 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5761 LNCS, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Detecting registration failure

Seshamani, S., Kumar, R., Rajan, P., Bejakovic, S., Mullin, G., Dassopoulos, T. & Hager, G., 2009, Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. p. 726-729 4 p. 5193150. (Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Development and preliminary data of novel integrated optical micro-force sensing tools for retinal microsurgery

Sun, Z., Balicki, M., Kang, J., Handa, J., Russell, T. & Iordachita, I., Nov 2 2009, 2009 IEEE International Conference on Robotics and Automation, ICRA '09. p. 1897-1902 6 p. 5152836. (Proceedings - IEEE International Conference on Robotics and Automation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Direct endoscopic video registration for sinus surgery

Mirota, D., Taylora, R. H., Ishii, M. & Hagera, G. D., Jun 19 2009, Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling. 72612K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7261).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Direct global adjustment methods for endoscopic mosaicking

Seshamania, S., Smith, M. D., Corso, J. J., Filipovich, M. O., Natarajan, A. & Hagera, G. D., Jun 19 2009, Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling. 72611D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7261).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Elasticity-based three dimensional ultrasound real-time volume rendering

Boctor, E. M., Matinfar, M., Ahmad, O., Rivaz, H., Choti Michael, M. & Taylor, R. H., Jun 19 2009, Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling. 72612V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7261).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enhancement of mobile C-arm cone-beam reconstruction using prior anatomical models

Sadowsky, O., Lee, J., Sutter, E. G., Wall, S. J., Prince, J. L. & Taylor, R. H., Jun 15 2009, Medical Imaging 2009: Physics of Medical Imaging. 72585B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7258).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Histograms of oriented optical flow and Binet-Cauchy kernels on nonlinear dynamical systems for the recognition of human actions

Chaudhry, R., Ravichandran, A., Hager, G. & Vidal, R., Jan 1 2009, 2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops 2009. IEEE Computer Society, p. 1932-1939 8 p. 5206821. (2009 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, CVPR Workshops 2009; vol. 2009 IEEE Computer Society Conference on Computer Vision and ...).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Incompressible cardiac motion estimation of the left ventricle using tagged MR images

Liu, X., Abd-Elmoniem, K. Z. & Prince, J. L., Dec 1 2009, Medical Image Computing and Computer-Assisted Intervention - MICCAI2009 - 12th International Conference, Proceedings. PART 2 ed. p. 331-338 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5762 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Intelligent frame selection for anatomic reconstruction from endoscopic video

Abretske, D., Mirota, D., Hager, G. D. & Ishii, M., Dec 1 2009, 2009 Workshop on Applications of Computer Vision, WACV 2009. 5403052. (2009 Workshop on Applications of Computer Vision, WACV 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning disease severity for capsule endoscopy images

Kumar, R., Rajan, P., Bejakovic, S., Seshamani, S., Mullin, G., Dassopoulos, T. & Hager, G., Nov 17 2009, Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. p. 1314-1317 4 p. 5193306. (Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution