Whiting School of Engineering

Research Output 1966 2019

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Conference contribution
2019

Automated Surgical Activity Recognition with One Labeled Sequence

DiPietro, R. & Hager, G. D., Jan 1 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 458-466 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11768 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Activity Recognition
Surgery
Availability
Robots
Annotation

Automatic quality control using hierarchical shape analysis for cerebellum parcellation

Zuo, L., Han, S., Carass, A., Ying, S. H., Onyike, C. U. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109490J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

cerebellum
quality control
Quality Control
Cerebellum
Quality control

Cerebellum parcellation with convolutional neural networks

Han, S., He, Y., Carass, A., Ying, S. H. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109490K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

cerebellum
Cerebellum
Neural networks
Magnetic resonance
Magnetic Resonance Spectroscopy

Control of Chemotaxis Through Absolute Concentration Robustness

Bhattacharya, S., Biswas, D., Enciso, G. A. & Iglesias, P. A., Jan 18 2019, 2018 IEEE Conference on Decision and Control, CDC 2018. Institute of Electrical and Electronics Engineers Inc., p. 4360-4365 6 p. 8619195. (Proceedings of the IEEE Conference on Decision and Control; vol. 2018-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chemotaxis
Robustness
Pathogens
Cell
Gradient

Evaluating the impact of intensity normalization on MR image synthesis

Reinhold, J. C., Dewey, B. E., Carass, A. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109493H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

synthesis
Learning
preprocessing
image analysis
Image analysis

Large-scale parcellation of the ventricular system using convolutional neural networks

Atlason, H. E., Shao, M., Robertsson, V., Sigurdsson, S., Gudnason, V., Prince, J. L. & Ellingsen, L. M., Jan 1 2019, Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, 109530N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10953).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

brain
Labels
Brain
Neural networks
markers

Learning to Avoid Poor Images: Towards Task-aware C-arm Cone-beam CT Trajectories

Zaech, J. N., Gao, C., Bier, B., Taylor, R., Maier, A., Navab, N. & Unberath, M., Jan 1 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 11-19 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11768 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computed Tomography
Tomography
Cones
Cone
Trajectories

Learning to Detect Collisions for Continuum Manipulators Without a Prior Model

Sefati, S., Sefati, S., Iordachita, I., Taylor, R. H. & Armand, M., Jan 1 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 182-190 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11768 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Manipulator
Manipulators
Continuum
Collision
Curvature

Mosquito pick-and-place: Automating a key step in PfSPZ-based Malaria vaccine production

Phalen, H., Vagdargi, P., Pozin, M., Chakravarty, S., Chirikjian, G. S., Iordachita, I. & Taylor, R. H., Aug 1 2019, 2019 IEEE 15th International Conference on Automation Science and Engineering, CASE 2019. IEEE Computer Society, p. 12-17 6 p. 8842860. (IEEE International Conference on Automation Science and Engineering; vol. 2019-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dissection
Vaccines
Computer vision
Robotics
Grippers

Mosquito Staging Apparatus for Producing PfSPZ Malaria Vaccines

Xu, M., Lyu, S., Xu, Y., Kocabalkanli, C., Chirikjian, B. K., Chirikjian, J. S., Davis, J., Kim, J. S., Iordachita, I., Taylor, R. H. & Chirikjian, G. S., Aug 1 2019, 2019 IEEE 15th International Conference on Automation Science and Engineering, CASE 2019. IEEE Computer Society, p. 443-449 7 p. 8843147. (IEEE International Conference on Automation Science and Engineering; vol. 2019-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Vaccines
Automation
Phonographs
Sorting
Computer vision

Multi-mosquito object detection and 2d pose estimation for automation of PfSPZ malaria vaccine production

Wu, H., Mu, J., Da, T., Xu, M., Taylor, R. H., Iordachita, I. & Chirikjian, G. S., Aug 1 2019, 2019 IEEE 15th International Conference on Automation Science and Engineering, CASE 2019. IEEE Computer Society, p. 411-417 7 p. 8842953. (IEEE International Conference on Automation Science and Engineering; vol. 2019-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Vaccines
Automation
Neural networks
Network architecture
Masks

Projection artifact suppression for inner retina in oct angiography

Liu, Y., Carass, A., Filippatou, A., He, Y., Solomon, S. D., Saidha, S., Calabresi, P. A. & Prince, J. L., Apr 2019, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 592-596 5 p. 8759466. (Proceedings - International Symposium on Biomedical Imaging; vol. 2019-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Angiography
Optical tomography
Artifacts
Retina
Optical Coherence Tomography

Recovering Physiological Changes in Nasal Anatomy with Confidence Estimates

Sinha, A., Liu, X., Ishii, M., Hager, G. D. & Taylor, R. H., Jan 1 2019, Uncertainty for Safe Utilization of Machine Learning in Medical Imaging and Clinical Image-Based Procedures - 1st International Workshop, UNSURE 2019, and 8th International Workshop, CLIP 2019, Held in Conjunction with MICCAI 2019, Proceedings. Greenspan, H., Tanno, R., Erdt, M., Arbel, T., Baumgartner, C., Dalca, A., Sudre, C. H., Wells, W. M., Drechsler, K., Erdt, M., Linguraru, M. G., Shekhar, R., Oyarzun Laura, C., Wesarg, S. & González Ballester, M. Á. (eds.). Springer, p. 115-124 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11840 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computed Tomography
Anatomy
Tomography
Confidence
Estimate

Semantic stereo for incidental satellite images

Bosch, M., Foster, K., Christie, G., Wang, S., Hager, G. & Brown, M., Mar 4 2019, Proceedings - 2019 IEEE Winter Conference on Applications of Computer Vision, WACV 2019. Institute of Electrical and Electronics Engineers Inc., p. 1524-1532 9 p. 8659180. (Proceedings - 2019 IEEE Winter Conference on Applications of Computer Vision, WACV 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Satellites
Binoculars
Labels
Neural networks

Synthesizing attributes with unreal engine for fine-grained activity analysis

Kim, T. S., Peven, M., Qiu, W., Yuille, A. & Hager, G., Feb 8 2019, Proceedings - 2019 IEEE Winter Conference on Applications of Computer Vision Workshops, WACVW 2019. Institute of Electrical and Electronics Engineers Inc., p. 35-37 3 p. 8638315. (Proceedings - 2019 IEEE Winter Conference on Applications of Computer Vision Workshops, WACVW 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Labels
Railroad cars
Engines
Masks
Classifiers

Toward computer vision systems that understand real-world assembly processes

Jones, J. D., Hager, G. & Khudanpur, S., Mar 4 2019, Proceedings - 2019 IEEE Winter Conference on Applications of Computer Vision, WACV 2019. Institute of Electrical and Electronics Engineers Inc., p. 426-434 9 p. 8659114. (Proceedings - 2019 IEEE Winter Conference on Applications of Computer Vision, WACV 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer vision

Uncertainty-aware occupancy map prediction using generative networks for robot navigation

Katyal, K., Popek, K., Paxton, C., Burlina, P. & Hager, G., May 1 2019, 2019 International Conference on Robotics and Automation, ICRA 2019. Institute of Electrical and Electronics Engineers Inc., p. 5453-5459 7 p. 8793500. (Proceedings - IEEE International Conference on Robotics and Automation; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Navigation
Robots
Sensors
Biological systems
Network architecture

Visual robot task planning

Paxton, C., Barnoy, Y., Katyal, K., Arora, R. & Hager, G., May 1 2019, 2019 International Conference on Robotics and Automation, ICRA 2019. Institute of Electrical and Electronics Engineers Inc., p. 8832-8838 7 p. 8793736. (Proceedings - IEEE International Conference on Robotics and Automation; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robots
Planning
Network architecture
Robotics
Neural networks
2018

2D Modeling and Correction of Fan-Beam Scan Geometry in OCT

Chen, M., Gee, J. C., Prince, J. L. & Aguirre, G. K., Jan 1 2018, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Bogunovic, H., Snead, D., Garvin, M. K., Chen, X. J., Ciompi, F., Xu, Y., Maier-Hein, L., Veta, M., Trucco, E., Stoyanov, D., Rajpoot, N., van der Laak, J., Martel, A. & McKenna, S. (eds.). Springer Verlag, p. 328-335 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11039 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fans
Geometry
Modeling
Retina
Landmarks

A computational framework for complementary situational awareness (CSA) in surgical assistant robots

Chalasani, P., Deguet, A., Kazanzides, P. & Taylor, R. H., Apr 2 2018, Proceedings - 2nd IEEE International Conference on Robotic Computing, IRC 2018. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 9-16 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Situational Awareness
Minimally Invasive Surgery
Surgery
Anatomy
Robot

A deep learning based anti-aliasing self super-resolution algorithm for MRI

Zhao, C., Carass, A., Dewey, B. E., Woo, J., Oh, J., Calabresi, P., Reich, D. S., Sati, P., Pham, D. L. & Prince, J. L., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Schnabel, J. A., Davatzikos, C., Alberola-López, C., Fichtinger, G. & Frangi, A. F. (eds.). Springer Verlag, p. 100-108 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Anti-aliasing
Aliasing
Super-resolution
Magnetic resonance
Magnetic resonance imaging

Adversarial deep structured nets for mass segmentation from mammograms

Zhu, W., Xiang, X., Tran, T. D., Hager, G. & Xie, X., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 847-850 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pixels
Breast
Learning
Datasets

A novel filtering approach for 3D harmonic phase analysis of tagged MRI

Wang, X., Stone, M. L., Prince, J. L. & Gomez, A., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057414

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Benchmarking
Magnetic resonance
magnetic resonance
High pass filters
Magnetic Resonance Imaging

A Unified Framework for Multi-view Multi-class Object Pose Estimation

Li, C., Bai, J. & Hager, G., Jan 1 2018, Computer Vision – ECCV 2018 - 15th European Conference, 2018, Proceedings. Weiss, Y., Ferrari, V., Sminchisescu, C. & Hebert, M. (eds.). Springer Verlag, p. 263-281 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11220 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pose Estimation
Multi-class
Masks
Fusion reactions
Neural networks

Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation

Zuo, L., Carass, A., Han, S. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 10578. 105780D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hidden Markov models
cerebellum
delineation
Cerebellum
Image classification

Counterfactual normalization: Proactively addressing dataset shift using causal mechanisms

Subbaswamy, A. & Saria, S., Jan 1 2018, 34th Conference on Uncertainty in Artificial Intelligence 2018, UAI 2018. Silva, R., Globerson, A. & Globerson, A. (eds.). Association For Uncertainty in Artificial Intelligence (AUAI), Vol. 2. p. 947-957 11 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Experiments

Cross-modality image synthesis from unpaired data using cyclegan: Effects of gradient consistency loss and training data size

Hiasa, Y., Otake, Y., Takao, M., Matsuoka, T., Takashima, K., Carass, A., Prince, J. L., Sugano, N. & Sato, Y., Jan 1 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 31-41 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modality
Synthesis
Gradient
Magnetic resonance imaging
Muscle

Crowdsourcing annotation of surgical instruments in videos of cataract surgery

Kim, T. S., Malpani, A., Reiter, A., Hager, G., Sikder, S. & Swaroop Vedula, S., Jan 1 2018, Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis - 7th Joint International Workshop, CVII-STENT 2018 and Third International Workshop, LABELS 2018 Held in Conjunction with MICCAI 2018. Lee, S-L., Trucco, E., Maier-Hein, L., Moriconi, S., Albarqouni, S., Jannin, P., Balocco, S., Zahnd, G., Mateus, D., Taylor, Z., Demirci, S., Stoyanov, D., Sznitman, R., Martel, A., Cheplygina, V., Granger, E. & Duong, L. (eds.). Springer Verlag, p. 121-130 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11043 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgery
Annotation
Pixel
Pixels
Operating rooms

Deep harmonization of inconsistent mr data for consistent volume segmentation

Dewey, B. E., Zhao, C., Carass, A., Oh, J., Calabresi, P., Van Zijl, P. C. & Prince, J. L., Jan 1 2018, Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Goksel, O., Oguz, I., Gooya, A. & Burgos, N. (eds.). Springer Verlag, p. 20-30 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11037 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance
Inconsistent
Image analysis
Learning systems
Brain

Deformable model reconstruction of the subarachnoid space

Glaister, J., Shao, M., Li, X., Carass, A., Roy, S., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 1057431

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Subarachnoid Space
Magnetic resonance imaging
Neurodegenerative diseases
Cerebrospinal fluid
Volume measurement

Dice overlap measures for objects of unknown number: Application to lesion segmentation

Oguz, I., Carass, A., Pham, D. L., Roy, S., Subbana, N., Calabresi, P., Yushkevich, P. A., Shinohara, R. T. & Prince, J. L., Jan 1 2018, Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 3rd International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Revised Selected Papers. Springer Verlag, p. 3-14 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10670 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dice
Overlap
Segmentation
Unknown
Image segmentation

Endoscopic Navigation in the Absence of CT Imaging

Sinha, A., Liu, X., Reiter, A., Ishii, M., Hager, G. & Taylor, R. H., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Frangi, A. F., Fichtinger, G., Schnabel, J. A., Alberola-López, C. & Davatzikos, C. (eds.). Springer Verlag, p. 64-71 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11073 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computed Tomography
Registration
Tomography
Navigation
Imaging

Evaluating Methods for End-User Creation of Robot Task Plans

Paxton, C., Jonathan, F., Hundt, A., Mutlu, B. & Hager, G., Dec 27 2018, 2018 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS 2018. Institute of Electrical and Electronics Engineers Inc., p. 6086-6092 7 p. 8594127. (IEEE International Conference on Intelligent Robots and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robots

Exploiting Partial Structural Symmetry for Patient-Specific Image Augmentation in Trauma Interventions

Fotouhi, J., Unberath, M., Taylor, G., Farashahi, A. G., Bier, B., Taylor, R. H., Osgood, G., Armand, M. & Navab, N., Jan 1 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Frangi, A. F., Fichtinger, G., Schnabel, J. A., Alberola-López, C. & Davatzikos, C. (eds.). Springer Verlag, p. 107-115 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11073 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Anatomy
Augmentation
Bone
Partial
Symmetry

FBG-Based Control of a Continuum Manipulator Interacting with Obstacles∗

Sefati, S., Murphy, R. J., Alambeigi, F., Pozin, M., Iordachita, I., Taylor, R. H. & Armand, M., Dec 27 2018, 2018 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS 2018. Institute of Electrical and Electronics Engineers Inc., p. 6477-6483 7 p. 8594407. (IEEE International Conference on Intelligent Robots and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Bragg gratings
Manipulators
Feedback
Feedback control
Bone

Guide Me: Interacting with Deep Networks

Rupprecht, C., Laina, I., Navab, N., Hager, G. & Tombari, F., Dec 14 2018, Proceedings - 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2018. IEEE Computer Society, p. 8551-8561 11 p. 8578990. (Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Query languages
Learning systems
Chemical activation
Semantics
Neural networks

Improving self super resolution in magnetic resonance images

Goyal, S., Zhao, C., Jog, A., Prince, J. L. & Carass, A., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 10578. 1057814

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic resonance
Image quality
magnetic resonance
Magnetic Resonance Spectroscopy
Post and Core Technique

Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT

Reaungamornrat, S., Carass, A., He, Y., Saidha, S., Calabresi, P. & Prince, J. L., Jan 1 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741B

Research output: Chapter in Book/Report/Conference proceedingConference contribution

retina
Image registration
Image quality
scanners
Retina

Inverse biomechanical modeling of the tongue via machine learning and synthetic training data

Tolpadi, A. A., Stone, M. L., Carass, A., Prince, J. L. & Gomez, A., Jan 1 2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). SPIE, Vol. 10576. 1057606

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Flaps
machine learning
tongue
Magnetic resonance
Tongue

Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas

Shao, M., Carass, A., Li, X., Dewey, B. E., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10578. 105780F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Normal Pressure Hydrocephalus
Atlases
Hydrocephalus
brain
Brain

Multi-layer fast level set segmentation for macular OCT

Liu, Y., Carass, A., Solomon, S., Saidha, S., Calabresi, P. & Prince, J. L., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 1445-1448 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
Retina
Experiments

On the effect of vibration on shape sensing of continuum manipulators using fiber Bragg gratings

Sefati, S., Alambeigi, F., Iordachita, I., Taylor, R. H. & Armand, M., Apr 6 2018, 2018 International Symposium on Medical Robotics, ISMR 2018. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 1-6 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Bragg gratings
Manipulators
Biopsy
Sensors
Medical applications

Patch-based image similarity for intraoperative 2D/3D pelvis registration during periacetabular osteotomy

Grupp, R. B., Armand, M. & Taylor, R. H., Jan 1 2018, OR 2.0 Context-Aware Operating Theaters, Computer Assisted Robotic Endoscopy, Clinical Image-Based Procedures, and Skin Image Analysis - 1st International Workshop, OR 2.0 2018 5th International Workshop, CARE 2018, 7th International Workshop, CLIP 2018, 3rd International Workshop, ISIC 2018 Held in Conjunction with MICCAI 2018. Malpani, A., Zenati, M. A., Oyarzun Laura, C., Celebi, M. E., Sarikaya, D., Codella, N. C., Halpern, A., Erdt, M., Maier-Hein, L., Xiongbiao, L., Wesarg, S., Stoyanov, D., Taylor, Z., Drechsler, K., Dana, K., Martel, A., Shekhar, R., De Ribaupierre, S., Reichl, T., McLeod, J., González Ballester, M. A., Collins, T. & Linguraru, M. G. (eds.). Springer Verlag, p. 153-163 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11041 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Relocation
Registration
Patch
Navigation
Triangulation

Regularizing face verification nets for pain intensity regression

Wang, F., Xiang, X., Liu, C., Tran, T. D., Reiter, A., Hager, G., Quon, H., Cheng, J. & Yuille, A. L., Feb 20 2018, 2017 IEEE International Conference on Image Processing, ICIP 2017 - Proceedings. IEEE Computer Society, Vol. 2017-September. p. 1087-1091 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Labels
Tuning

S3D: Stacking Segmental P3D for Action Quality Assessment

Xiang, X., Tian, Y., Reiter, A., Hager, G. & Tran, T. D., Aug 29 2018, 2018 IEEE International Conference on Image Processing, ICIP 2018 - Proceedings. IEEE Computer Society, p. 928-932 5 p. 8451364. (Proceedings - International Conference on Image Processing, ICIP).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sports
Surgery
Water

Self super-resolution for magnetic resonance images using deep networks

Zhao, C., Carass, A., Dewey, B. E. & Prince, J. L., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 365-368 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Magnetic resonance
Image resolution
Magnetic Resonance Spectroscopy
Imaging techniques

Self-supervised learning for dense depth estimation in monocular endoscopy

Liu, X., Sinha, A., Unberath, M., Ishii, M., Hager, G., Taylor, R. H. & Reiter, A., Jan 1 2018, OR 2.0 Context-Aware Operating Theaters, Computer Assisted Robotic Endoscopy, Clinical Image-Based Procedures, and Skin Image Analysis - 1st International Workshop, OR 2.0 2018 5th International Workshop, CARE 2018, 7th International Workshop, CLIP 2018, 3rd International Workshop, ISIC 2018 Held in Conjunction with MICCAI 2018. Malpani, A., Zenati, M. A., Oyarzun Laura, C., Celebi, M. E., Sarikaya, D., Codella, N. C., Halpern, A., Erdt, M., Maier-Hein, L., Xiongbiao, L., Wesarg, S., Stoyanov, D., Taylor, Z., Drechsler, K., Dana, K., Martel, A., Shekhar, R., De Ribaupierre, S., Reichl, T., McLeod, J., González Ballester, M. A., Collins, T. & Linguraru, M. G. (eds.). Springer Verlag, p. 128-138 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11041 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Depth Estimation
Endoscopy
Supervised learning
Supervised Learning
Computerized tomography

Shortcomings of ventricle segmentation using deep convolutional networks

Shao, M., Han, S., Carass, A., Li, X., Blitz, A. M., Prince, J. L. & Ellingsen, L. M., Jan 1 2018, Understanding and Interpreting Machine Learning in Medical Image Computing Applications - First International Workshops MLCN 2018, DLF 2018, and iMIMIC 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Reyes, M., Cardoso, M. J., Silva, C. A., Stoyanov, D., Maier-Hein, L., Pereira, S., Kia, S. M., Oguz, I., Landman, B., Martel, A., Duchesnay, E., Lofstedt, T., Marquand, A. F. & Meier, R. (eds.). Springer Verlag, p. 79-86 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11038 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Segmentation
Magnetic Resonance Image
Magnetic resonance
Neural Networks
Neural networks

Strain map of the tongue in normal and ALS speech patterns from tagged and diffusion MRI

Xing, F., Prince, J. L., Stone, M., Reese, T. G., Atassi, N., Wedeen, V. J., El Fakhri, G. & Woo, J., Jan 1 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10574. 1057411

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diffusion Magnetic Resonance Imaging
tongue
Amyotrophic Lateral Sclerosis
Tongue
Magnetic resonance imaging

Technical note: An augmented reality system for total hip arthroplasty

Fotouhi, J., Alexander, C. P., Unberath, M., Taylor, G., Lee, S. C., Fuerst, B., Alex Johnson, M. D., Greg Osgood, M. D., Taylor, R. H., Khanuja, H. S., Navab, N. & Armand, M., Jan 1 2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10576. 105760J

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Arthroplasty
Augmented reality
Hip
surgeons
Arm