Whiting School of Engineering

Research Output 1966 2018

Filter
Conference contribution
2018

Adversarial deep structured nets for mass segmentation from mammograms

Zhu, W., Xiang, X., Tran, T. D., Hager, G. D. & Xie, X. May 23 2018 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April, p. 847-850 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pixels
Breast
Learning
Datasets

Regularizing face verification nets for pain intensity regression

Wang, F., Xiang, X., Liu, C., Tran, T. D., Reiter, A., Hager, G. D., Quon, H., Cheng, J. & Yuille, A. L. Feb 20 2018 2017 IEEE International Conference on Image Processing, ICIP 2017 - Proceedings. IEEE Computer Society, Vol. 2017-September, p. 1087-1091 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Labels
Tuning
2017

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging

Xing, F., Prince, J. L., Stone, M., Wedeen, V. J., El Fakhri, G. & Woo, J. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cine Magnetic Resonance Imaging
tongue
Atlases
Magnetic resonance
Tongue

A highly sensitive fiber Bragg Grating shape sensor for continuum manipulators with large deflections

Sefati, S., Pozin, M., Alambeigi, F., Iordachita, I., Taylor, R. H. & Armand, M. Dec 21 2017 IEEE SENSORS 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-December, p. 1-3 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Bragg gratings
Manipulators
Sensors
Medical applications
Signal to noise ratio

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dura Mater
Magnetic resonance
magnetic resonance
Brain
Spinal Cord

Catheter tracking in an interventional photoacoustic surgical system

Cheng, A., Itsarachaiyot, Y., Kim, Y., Zhang, H. K., Taylor, R. H. & Boctor, E. M. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013527

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photoacoustic effect
Catheters
markers
Imaging techniques
Cameras

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J. 2017 Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138, 1013813

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
scanners
Software
tomography

Combining neural networks and tree search for task and motion planning in challenging environments

Paxton, C., Raman, V., Hager, G. D. & Kobilarov, M. Dec 13 2017 IROS 2017 - IEEE/RSJ International Conference on Intelligent Robots and Systems. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-September, p. 6059-6066 8 p. 8206505

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Temporal logic
Motion planning
Reinforcement learning
Neural networks
Specifications

Co-robotic ultrasound imaging: A cooperative force control approach

Finocchi, R., Aalamifar, F., Fang, T. Y., Taylor, R. H. & Boctor, E. M. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013510

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Physical Exertion
approach control
Force control
Robotics
robotics

CoSTAR: Instructing collaborative robots with behavior trees and vision

Paxton, C., Hundt, A., Jonathan, F., Guerin, K. & Hager, G. D. Jul 21 2017 ICRA 2017 - IEEE International Conference on Robotics and Automation. Institute of Electrical and Electronics Engineers Inc., p. 564-571 8 p. 7989070

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robots
Industrial robots
Robotics
Automation
Innovation

Deep supervision with shape concepts for occlusion-aware 3D object parsing

Li, C., Zia, M. Z., Tran, Q. H., Yu, X., Hager, G. D. & Chandraker, M. Nov 6 2017 Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January, p. 388-397 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Network architecture
Volatile organic compounds
Visibility
Computer aided design
Semantics

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371F

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Labels
templates
Labeling
marking

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients

Lang, A., Carass, A., Bittner, A. K., Ying, H. S. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371M

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Retinitis Pigmentosa
Optical tomography
Optical Coherence Tomography
pathology
Pathology

Incompressible phase registration for motion estimation from tagged magnetic resonance images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L. 2017 Reconstruction, Segmentation, and Analysis of Medical Images - 1st International Workshops, RAMBO 2016 and HVSMR 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Springer Verlag, Vol. 10129 LNCS, p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10129 LNCS)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Magnetic Resonance Image
Motion Estimation
Motion estimation
Magnetic resonance
Registration

Learning in an Uncertain World: Representing Ambiguity Through Multiple Hypotheses

Rupprecht, C., Laina, I., Dipietro, R., Baust, M., Tombari, F., Navab, N. & Hager, G. D. Dec 22 2017 Proceedings - 2017 IEEE International Conference on Computer Vision, ICCV 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-October, p. 3611-3620 10 p. 8237650

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image classification
Image segmentation
Uncertainty
Object detection

Localization of subsurface photoacoustic fiducials for intraoperative guidance

Cheng, A., Zhang, H. K., Kang, J. U., Taylor, R. H. & Boctor, E. M. 2017 Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XV. SPIE, Vol. 10054, 100541D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photoacoustic effect
Transducers
Acoustics
surgeons
Ultrasonics

Longitudinal analysis of mouse SDOCT volumes

Antony, B. J., Carass, A., Lang, A., Kim, B. J., Zack, D. J. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
mice
tomography
Animals

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning

Lee, J., Carass, A., Jog, A., Zhao, C. & Prince, J. L. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331I

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
Radiotherapy
Magnetic resonance imaging
planning
radiation therapy

Safe tissue manipulation in retinal microsurgery via motorized instruments with force sensing

Gonenc, B., Gehlbach, P., Taylor, R. H. & Iordachita, I. Dec 21 2017 IEEE SENSORS 2017 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-December, p. 1-3 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Peeling
Tissue
Membranes
Fiber Bragg gratings
Adhesion

Simultaneous segmentation and correspondence improvement using statistical modes

Sinha, A., Reiter, A., Leonard, S., Ishii, M., Hager, G. D. & Taylor, R. H. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331B

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Statistical Models
Principal component analysis
Momentum
Principal Component Analysis
Patient Care

Software architecture of the da vinci research kit

Chen, Z., Deguet, A., Taylor, R. H. & Kazanzides, P. May 11 2017 Proceedings - 2017 1st IEEE International Conference on Robotic Computing, IRC 2017. Institute of Electrical and Electronics Engineers Inc., p. 180-187 8 p. 7926536

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Software architecture
Software Architecture
Manipulator
Operating Systems
Open Source

Tactile object recognition and localization using spatially-varying appearance

Pezzementi, Z. & Hager, G. D. 2017 Robotics Research - The 15th International Symposium ISRR. Springer Verlag, Vol. 100, p. 201-217 17 p. (Springer Tracts in Advanced Robotics; vol. 100)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Object recognition
Sensors
State estimation
Robotics
Textures

Temporal convolutional networks for action segmentation and detection

Lea, C., Flynn, M. D., Vidal, R., Reiter, A. & Hager, G. D. Nov 6 2017 Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January, p. 1003-1012 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Convolution
Recurrent neural networks
Robotics
Classifiers
Education

Test suite for image-based motion estimation of the brain and tongue

Ramsey, J., Prince, J. L. & Gomez, A. D. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

tongue
Motion estimation
Tongue
brain
Brain

The triggering, curving and stopping of excitable waves during cell migration

Bhattacharya, S. & Iglesias, P. A. May 10 2017 2017 51st Annual Conference on Information Sciences and Systems, CISS 2017. Institute of Electrical and Electronics Engineers Inc., 7926103

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Membranes
Membrane
Polymerization
Factors
Traveling wave

Treatment-response models for counterfactual reasoning with continuous-time, continuous-valued interventions

Soleimani, H., Subbaswamy, A. & Saria, S. 2017 Uncertainty in Artificial Intelligence - Proceedings of the 33rd Conference, UAI 2017. AUAI Press Corvallis

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dynamical systems
2016

Accuracy assessment and kinematic calibration of the robotic endoscopic microsurgical system

Feng, L., Wilkening, P., Sevimli, Y., Balicki, M., Olds, K. C. & Taylor, R. H. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 5091-5094 4 p. 7591872

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Robotics
Biomechanical Phenomena
Calibration
Kinematics
Optical Devices

Anatomically constrained video-CT registration via the V-IMLOP algorithm

Billings, S. D., Sinha, A., Reiter, A., Leonard, S., Ishii, M., Hager, G. D. & Taylor, R. H. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9902 LNCS, p. 133-141 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9902 LNCS)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Registration
Navigation System
Navigation systems
Surgery
Endoscope

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction

Abulnaga, S. M., Yang, Z., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L. 2016 Medical Imaging 2016: Computer-Aided Diagnosis. SPIE, Vol. 9785, 97852P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cerebellar Diseases
Cerebellum
Atrophy
cerebellum
atrophy

Automatic segmentation and statistical shape modeling of the paranasal sinuses to estimate natural variations

Sinha, A., Leonard, S., Reiter, A., Ishii, M., Taylor, R. H. & Hager, G. D. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

paranasal sinuses
Paranasal Sinuses
sinuses
Tomography
Snakes

Autonomous on-board Near Earth Object detection

Rajan, P., Burlina, P., Chen, M., Edell, D., Jedynak, B., Mehta, N., Sinha, A. & Hager, G. Mar 30 2016 2015 IEEE Applied Imagery Pattern Recognition Workshop, AIPR 2015. Institute of Electrical and Electronics Engineers Inc., 7444551

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Asteroids
Earth (planet)
Telescopes
Sun
Image analysis

Catheter tracking in an interventional photoacoustic surgical system

Cheng, A., Kim, Y., Zhang, H. K., Taylor, R. H. & Boctor, E. M. Dec 16 2016 2016 Conference on Lasers and Electro-Optics, CLEO 2016. Institute of Electrical and Electronics Engineers Inc., 7787359

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photoacoustic effect
Catheters
Imaging techniques

Combined registration and motion correction of longitudinal retinal OCT data

Lang, A., Carass, A., Al-Louzi, O., Bhargava, P., Solomon, S. D., Calabresi, P. A. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840X

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
tomography
Thickness measurement
Eye movements

Combining multi-atlas segmentation with brain surface estimation

Huo, Y., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Atlases
brain
Brain
Surface reconstruction
Labels

Concurrent nonparametric estimation of organ geometry and tissue stiffness using continuous adaptive palpation

Chalasani, P., Wang, L., Roy, R., Simaan, N., Taylor, R. H. & Kobilarov, M. Jun 8 2016 2016 IEEE International Conference on Robotics and Automation, ICRA 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-June, p. 4164-4171 8 p. 7487609

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stiffness
Tissue
Geometry
Sensors
End effectors

CT and MRI fusion for postimplant prostate brachytherapy evaluation

Dehghan, E., Le, Y., Lee, J., Song, D. Y., Fichtinger, G. & Prince, J. L. Jun 15 2016 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June, p. 625-628 4 p. 7493345

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brachytherapy
Magnetic resonance imaging
Seed
Prostate
Fusion reactions

Development of a snake-like dexterous manipulator for skull base surgery

Coemert, S., Gao, A., Carey, J. P., Traeger, M. F., Taylor, R. H., Lueth, T. C. & Armand, M. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 5087-5090 4 p. 7591871

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Snakes
Skull Base
Surgery
Manipulators
Endoscopy

Do what I want, not what I did: Imitation of skills by planning sequences of actions

Paxton, C., Jonathan, F., Kobilarov, M. & Hager, G. D. Nov 28 2016 IROS 2016 - 2016 IEEE/RSJ International Conference on Intelligent Robots and Systems. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-November, p. 3778-3785 8 p. 7759556

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sampling
Planning
Magnetic structure
Electric grounding
Motion planning

Effects of spatial resolution on image registration

Zhao, C., Carass, A., Jog, A. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840Y

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spatial Analysis
Image registration
spatial resolution
random noise
estimates

Endoscopic-CT: Learning-based photometric reconstruction for endoscopic sinus surgery

Reiter, A., Leonard, S., Sinha, A., Ishii, M., Taylor, R. H. & Hager, G. D. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 978418

Research output: Chapter in Book/Report/Conference proceedingConference contribution

sinuses
surgery
Surgery
learning
Learning

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L. 2016 Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none, p. 87-96 10 p. (Mathematics and Visualization; vol. none)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Orientation
Fiber reinforced materials
Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques

Hierarchical semantic parsing for object pose estimation in densely cluttered scenes

Li, C., Bohren, J., Carlson, E. & Hager, G. D. Jun 8 2016 2016 IEEE International Conference on Robotics and Automation, ICRA 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-June, p. 5068-5075 8 p. 7487712

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Hand tools
Object recognition

Image-based navigation for functional endoscopic sinus surgery using structure from motion

Leonard, S., Reiter, A., Sinha, A., Ishii, M., Taylor, R. H. & Hager, G. D. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840V

Research output: Chapter in Book/Report/Conference proceedingConference contribution

sinuses
endoscopes
Endoscopy
Endoscopes
navigation

Improving cerebellar segmentation with statistical fusion

Plassard, A. J., Yang, Z., Prince, J. L., Claassen, D. O. & Landman, B. A. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97842R

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Iterative methods
Fusion reactions
fusion
Imaging techniques
Post and Core Technique

Incremental scene understanding on dense SLAM

Li, C., Xiao, H., Tateno, K., Tombari, F., Navab, N. & Hager, G. D. Nov 28 2016 IROS 2016 - 2016 IEEE/RSJ International Conference on Intelligent Robots and Systems. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-November, p. 574-581 8 p. 7759111

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semantics
Labels
Time series

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S. D., Calabresi, P. A. & Prince, J. L. Jun 15 2016 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June, p. 197-200 4 p. 7493243

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical tomography
Optical Coherence Tomography
Magnetic resonance imaging
Retina
Imaging techniques

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization

Yang, Z., Abulnaga, S. M., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C., Ying, S. H. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

ataxia
atrophy
Cerebellar Ataxia
landmarks
Ataxia

Learning convolutional action primitives for fine-grained action recognition

Lea, C., Vidal, R. & Hager, G. D. Jun 8 2016 2016 IEEE International Conference on Robotics and Automation, ICRA 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-June, p. 1642-1649 8 p. 7487305

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Time series
Human robot interaction
Cooking
End effectors
Accelerometers

MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery

Reaungamornrat, S., De Silva, T., Uneri, A., Wolinsky, J. P., Khanna, A. J., Kleinszig, G., Vogt, S., Prince, J. L. & Siewerdsen, J. H. 2016 Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 9786, 97860H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer-Assisted Surgery
spine
Image registration
surgery
Surgery

Process monitoring in the intensive care unit: Assessing patient mobility through activity analysis with a non-invasive mobility sensor

Reiter, A., Ma, A., Rawat, N., Shrock, C. & Saria, S. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9900 LNCS, p. 482-490 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS)

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intensive care units
Process Monitoring
Process monitoring
Sensor
Unit