Whiting School of Engineering

Research Output 1966 2018

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Conference contribution
2017

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging

Xing, F., Prince, J. L., Stone, M., Wedeen, V. J., El Fakhri, G. & Woo, J. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331H

Research output: ResearchConference contribution

Cine Magnetic Resonance Imaging
Atlases
Tongue
Magnetic resonance
Imaging techniques

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371D

Research output: ResearchConference contribution

Dura Mater
Spinal Cord
Magnetic Resonance Spectroscopy
Brain
Magnetic resonance

Catheter tracking in an interventional photoacoustic surgical system

Cheng, A., Itsarachaiyot, Y., Kim, Y., Zhang, H. K., Taylor, R. H. & Boctor, E. M. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013527

Research output: ResearchConference contribution

Photoacoustic effect
Catheters
Imaging techniques
markers
Cameras

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J. 2017 Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138, 1013813

Research output: ResearchConference contribution

Optical Coherence Tomography
Software
Databases
scanners
tomography

Co-robotic ultrasound imaging: A cooperative force control approach

Finocchi, R., Aalamifar, F., Fang, T. Y., Taylor, R. H. & Boctor, E. M. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013510

Research output: ResearchConference contribution

Force control
Robotics
Ultrasonics
Imaging techniques
Physical Exertion

CoSTAR: Instructing collaborative robots with behavior trees and vision

Paxton, C., Hundt, A., Jonathan, F., Guerin, K. & Hager, G. D. Jul 21 2017 ICRA 2017 - IEEE International Conference on Robotics and Automation. Institute of Electrical and Electronics Engineers Inc., p. 564-571 8 p. 7989070

Research output: ResearchConference contribution

Robots
Industrial robots
Robotics
Automation
Innovation

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371F

Research output: ResearchConference contribution

Labels
templates
Atlases
Labeling
Brain

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients

Lang, A., Carass, A., Bittner, A. K., Ying, H. S. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371M

Research output: ResearchConference contribution

pathology
tomography
Retinitis Pigmentosa
Optical Coherence Tomography
Pathology

Incompressible phase registration for motion estimation from tagged magnetic resonance images

Xing, F., Woo, J., Gomez, A. D., Pham, D. L., Bayly, P. V., Stone, M. & Prince, J. L. 2017 Reconstruction, Segmentation, and Analysis of Medical Images - 1st International Workshops, RAMBO 2016 and HVSMR 2016 Held in Conjunction with MICCAI 2016, Revised Selected Papers. Springer Verlag, Vol. 10129 LNCS, p. 24-33 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10129 LNCS)

Research output: ResearchConference contribution

Magnetic Resonance Image
Motion Estimation
Registration
Motion
Motion estimation

Localization of subsurface photoacoustic fiducials for intraoperative guidance

Cheng, A., Zhang, H. K., Kang, J. U., Taylor, R. H. & Boctor, E. M. 2017 Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XV. SPIE, Vol. 10054, 100541D

Research output: ResearchConference contribution

Transducers
Acoustics
Surgeons
Photoacoustic effect
Ultrasonics

Longitudinal analysis of mouse SDOCT volumes

Antony, B. J., Carass, A., Lang, A., Kim, B. J., Zack, D. J. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371H

Research output: ResearchConference contribution

mice
tomography
Optical Coherence Tomography
Optical tomography
Animals

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning

Lee, J., Carass, A., Jog, A., Zhao, C. & Prince, J. L. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331I

Research output: ResearchConference contribution

Radiotherapy
Magnetic resonance imaging
Planning
planning
radiation therapy

Simultaneous segmentation and correspondence improvement using statistical modes

Sinha, A., Reiter, A., Leonard, S., Ishii, M., Hager, G. D. & Taylor, R. H. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331B

Research output: ResearchConference contribution

Statistical Models
Principal component analysis
Momentum
Principal Component Analysis
Patient Care

Software architecture of the da vinci research kit

Chen, Z., Deguet, A., Taylor, R. H. & Kazanzides, P. May 11 2017 Proceedings - 2017 1st IEEE International Conference on Robotic Computing, IRC 2017. Institute of Electrical and Electronics Engineers Inc., p. 180-187 8 p. 7926536

Research output: ResearchConference contribution

Software Architecture
Manipulator
Operating Systems
Open Source
Subsystem

Tactile object recognition and localization using spatially-varying appearance

Pezzementi, Z. & Hager, G. D. 2017 Robotics Research - The 15th International Symposium ISRR. Springer Verlag, Vol. 100, p. 201-217 17 p. (Springer Tracts in Advanced Robotics; vol. 100)

Research output: ResearchConference contribution

Object recognition
Sensors
State estimation
Robotics
Textures

Test suite for image-based motion estimation of the brain and tongue

Ramsey, J., Prince, J. L. & Gomez, A. D. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371G

Research output: ResearchConference contribution

Motion estimation
Brain
tongue
brain
Tongue

The triggering, curving and stopping of excitable waves during cell migration

Bhattacharya, S. & Iglesias, P. A. May 10 2017 2017 51st Annual Conference on Information Sciences and Systems, CISS 2017. Institute of Electrical and Electronics Engineers Inc., 7926103

Research output: ResearchConference contribution

Membrane
Factors
Polymerization
Traveling wave
Critical point

Treatment-response models for counterfactual reasoning with continuous-time, continuous-valued interventions

Soleimani, H., Subbaswamy, A. & Saria, S. 2017 Uncertainty in Artificial Intelligence - Proceedings of the 33rd Conference, UAI 2017. AUAI Press Corvallis

Research output: ResearchConference contribution

Dynamical systems
2016

Accuracy assessment and kinematic calibration of the robotic endoscopic microsurgical system

Feng, L., Wilkening, P., Sevimli, Y., Balicki, M., Olds, K. C. & Taylor, R. H. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 5091-5094 4 p. 7591872

Research output: ResearchConference contribution

Robotics
Biomechanical Phenomena
Calibration
Kinematics
Optical Devices

Anatomically constrained video-CT registration via the V-IMLOP algorithm

Billings, S. D., Sinha, A., Reiter, A., Leonard, S., Ishii, M., Hager, G. D. & Taylor, R. H. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9902 LNCS, p. 133-141 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9902 LNCS)

Research output: ResearchConference contribution

Registration
Navigation System
Surgery
Navigation systems
Endoscope

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction

Abulnaga, S. M., Yang, Z., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C. U., Ying, S. H. & Prince, J. L. 2016 Medical Imaging 2016: Computer-Aided Diagnosis. SPIE, Vol. 9785, 97852P

Research output: ResearchConference contribution

Cerebellar Diseases
Cerebellum
Atrophy
regression analysis
Spinocerebellar Ataxias

Automatic segmentation and statistical shape modeling of the paranasal sinuses to estimate natural variations

Sinha, A., Leonard, S., Reiter, A., Ishii, M., Taylor, R. H. & Hager, G. D. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840D

Research output: ResearchConference contribution

Paranasal Sinuses
Tomography
Population
paranasal sinuses
estimates

Autonomous on-board Near Earth Object detection

Rajan, P., Burlina, P., Chen, M., Edell, D., Jedynak, B., Mehta, N., Sinha, A. & Hager, G. Mar 30 2016 2015 IEEE Applied Imagery Pattern Recognition Workshop, AIPR 2015. Institute of Electrical and Electronics Engineers Inc., 7444551

Research output: ResearchConference contribution

Asteroids
Earth (planet)
Object detection
Telescopes
Sun

Catheter tracking in an interventional photoacoustic surgical system

Cheng, A., Kim, Y., Zhang, H. K., Taylor, R. H. & Boctor, E. M. Dec 16 2016 2016 Conference on Lasers and Electro-Optics, CLEO 2016. Institute of Electrical and Electronics Engineers Inc., 7787359

Research output: ResearchConference contribution

Photoacoustic effect
Catheters
Imaging techniques

Combined registration and motion correction of longitudinal retinal OCT data

Lang, A., Carass, A., Al-Louzi, O., Bhargava, P., Solomon, S. D., Calabresi, P. A. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840X

Research output: ResearchConference contribution

tomography
Optical tomography
Optical Coherence Tomography
Thickness measurement
Eye movements

Combining multi-atlas segmentation with brain surface estimation

Huo, Y., Carass, A., Resnick, S. M., Pham, D. L., Prince, J. L. & Landman, B. A. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840E

Research output: ResearchConference contribution

Atlases
Brain
brain
Surface reconstruction
Labels

Concurrent nonparametric estimation of organ geometry and tissue stiffness using continuous adaptive palpation

Chalasani, P., Wang, L., Roy, R., Simaan, N., Taylor, R. H. & Kobilarov, M. Jun 8 2016 2016 IEEE International Conference on Robotics and Automation, ICRA 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-June, p. 4164-4171 8 p. 7487609

Research output: ResearchConference contribution

Stiffness
Tissue
Geometry
Sensors
End effectors

CT and MRI fusion for postimplant prostate brachytherapy evaluation

Dehghan, E., Le, Y., Lee, J., Song, D. Y., Fichtinger, G. & Prince, J. L. Jun 15 2016 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June, p. 625-628 4 p. 7493345

Research output: ResearchConference contribution

Magnetic resonance imaging
Seed
Fusion reactions
Brachytherapy
Prostate

Development of a snake-like dexterous manipulator for skull base surgery

Coemert, S., Gao, A., Carey, J. P., Traeger, M. F., Taylor, R. H., Lueth, T. C. & Armand, M. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 5087-5090 4 p. 7591871

Research output: ResearchConference contribution

Snakes
Skull Base
Surgery
Manipulators
Direction compound

Do what I want, not what I did: Imitation of skills by planning sequences of actions

Paxton, C., Jonathan, F., Kobilarov, M. & Hager, G. D. Nov 28 2016 IROS 2016 - 2016 IEEE/RSJ International Conference on Intelligent Robots and Systems. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-November, p. 3778-3785 8 p. 7759556

Research output: ResearchConference contribution

Sampling
Planning
Magnetic structure
Electric grounding
Motion planning

Effects of spatial resolution on image registration

Zhao, C., Carass, A., Jog, A. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840Y

Research output: ResearchConference contribution

spatial resolution
Spatial Analysis
Image registration
random noise
estimates

Endoscopic-CT: Learning-based photometric reconstruction for endoscopic sinus surgery

Reiter, A., Leonard, S., Sinha, A., Ishii, M., Taylor, R. H. & Hager, G. D. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 978418

Research output: ResearchConference contribution

sinuses
surgery
learning
Surgery
Geometry

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L. 2016 Computational Diffusion MRI - MICCAI Workshop, 2015. Springer Heidelberg, Vol. none, p. 87-96 10 p. (Mathematics and Visualization; vol. none)

Research output: ResearchConference contribution

Fiber Orientation
Fiber reinforced materials
Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques

Hierarchical semantic parsing for object pose estimation in densely cluttered scenes

Li, C., Bohren, J., Carlson, E. & Hager, G. D. Jun 8 2016 2016 IEEE International Conference on Robotics and Automation, ICRA 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-June, p. 5068-5075 8 p. 7487712

Research output: ResearchConference contribution

Semantics
Hand tools
Object recognition

Image-based navigation for functional endoscopic sinus surgery using structure from motion

Leonard, S., Reiter, A., Sinha, A., Ishii, M., Taylor, R. H. & Hager, G. D. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840V

Research output: ResearchConference contribution

sinuses
endoscopes
navigation
surgery
Endoscopy

Improving cerebellar segmentation with statistical fusion

Plassard, A. J., Yang, Z., Prince, J. L., Claassen, D. O. & Landman, B. A. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97842R

Research output: ResearchConference contribution

Iterative methods
Fusion reactions
Imaging techniques
fusion
Population

Incremental scene understanding on dense SLAM

Li, C., Xiao, H., Tateno, K., Tombari, F., Navab, N. & Hager, G. D. Nov 28 2016 IROS 2016 - 2016 IEEE/RSJ International Conference on Intelligent Robots and Systems. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-November, p. 574-581 8 p. 7759111

Research output: ResearchConference contribution

Semantics
Labels
Time series

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace

Lang, A., Carass, A., Jedynak, B. M., Solomon, S. D., Calabresi, P. A. & Prince, J. L. Jun 15 2016 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June, p. 197-200 4 p. 7493243

Research output: ResearchConference contribution

Optical tomography
Optical Coherence Tomography
Magnetic resonance imaging
Imaging techniques
Processing

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization

Yang, Z., Abulnaga, S. M., Carass, A., Kansal, K., Jedynak, B. M., Onyike, C., Ying, S. H. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840P

Research output: ResearchConference contribution

Cerebellar Ataxia
Ataxia
Atrophy
ataxia
atrophy

Learning convolutional action primitives for fine-grained action recognition

Lea, C., Vidal, R. & Hager, G. D. Jun 8 2016 2016 IEEE International Conference on Robotics and Automation, ICRA 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-June, p. 1642-1649 8 p. 7487305

Research output: ResearchConference contribution

Time series
Human robot interaction
Cooking
End effectors
Accelerometers

MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery

Reaungamornrat, S., De Silva, T., Uneri, A., Wolinsky, J. P., Khanna, A. J., Kleinszig, G., Vogt, S., Prince, J. L. & Siewerdsen, J. H. 2016 Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 9786, 97860H

Research output: ResearchConference contribution

spine
surgery
Computer-Assisted Surgery
Spine
Image registration

Process monitoring in the intensive care unit: Assessing patient mobility through activity analysis with a non-invasive mobility sensor

Reiter, A., Ma, A., Rawat, N., Shrock, C. & Saria, S. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9900 LNCS, p. 482-490 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS)

Research output: ResearchConference contribution

Process Monitoring
Sensor
Unit
Intensive care units
Process monitoring

Progress toward robotic surgery of the lateral skull base: Integration of a dexterous continuum manipulator and flexible ring curette

Gao, A., Carey, J. P., Murphy, R. J., Iordachita, I., Taylor, R. H. & Armand, M. Jun 8 2016 2016 IEEE International Conference on Robotics and Automation, ICRA 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-June, p. 4429-4435 7 p. 7487642

Research output: ResearchConference contribution

Manipulators
Robotic surgery
Dissection
Brain
Kinematics

Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles

Li, K., Ye, C., Yang, Z., Carass, A., Ying, S. H. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97841H

Research output: ResearchConference contribution

Quality assurance
assurance
Diffusion tensor imaging
Logistics
Classifiers

Recognizing surgical activities with recurrent neural networks

Dipietro, R., Lea, C., Malpani, A., Ahmidi, N., Vedula, S. S., Lee, G. I., Lee, M. R. & Hager, G. D. 2016 Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, Vol. 9900 LNCS, p. 551-558 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS)

Research output: ResearchConference contribution

Recurrent Neural Networks
Gesture
Recurrent neural networks
Kinematics
Model

Robot-assisted retinal vein cannulation with force-based puncture detection: Micron vs. the steady-hand eye robot

Gonenc, B., Tran, N., Gehlbach, P., Taylor, R. H. & Iordachita, I. Oct 13 2016 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October, p. 5107-5111 5 p. 7591876

Research output: ResearchConference contribution

Retinal Vein
Punctures
Catheterization
Hand
End effectors

Segmental spatiotemporal CNNs for fine-grained action segmentation

Lea, C., Reiter, A., Vidal, R. & Hager, G. D. 2016 Computer Vision - 14th European Conference, ECCV 2016, Proceedings. Springer Verlag, Vol. 9907 LNCS, p. 36-52 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9907 LNCS)

Research output: ResearchConference contribution

Segmentation
Model
Object
Relationships
Human robot interaction

Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling

Ellingsen, L. M., Roy, S., Carass, A., Blitz, A. M., Pham, D. L. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97840G

Research output: ResearchConference contribution

Normal Pressure Hydrocephalus
Atlases
Labeling
Tissue
marking

Segmentation of thalamus from MR images via task-driven dictionary learning

Liu, L., Glaister, J., Sun, X., Carass, A., Tran, T. D. & Prince, J. L. 2016 Medical Imaging 2016: Image Processing. SPIE, Vol. 9784, 97843H

Research output: ResearchConference contribution

thalamus
dictionaries
learning
Glossaries
Thalamus

Semi-autonomous telerobotic assembly over high-latency networks

Bohren, J., Paxton, C., Howarth, R., Hager, G. D. & Whitcomb, L. L. Apr 12 2016 ACM/IEEE International Conference on Human-Robot Interaction. IEEE Computer Society, Vol. 2016-April, p. 149-156 8 p. 7451746

Research output: ResearchConference contribution

Robotics
Telemetering
Remote control
NASA
Time delay