Whiting School of Engineering

Research Output 1966 2018

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Chapter
2016

Modeling excitable dynamics of chemotactic networks

Bhattacharya, S. & Iglesias, P. A. 2016 Methods in Molecular Biology. Humana Press Inc., Vol. 1407, p. 397-415 19 p. (Methods in Molecular Biology; vol. 1407)

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemotactic Factors
Chemotaxis
2015

Geometric deformable models

Bai, Y., Han, X. & Prince, J. L. Jan 1 2015 Handbook of Biomedical Imaging: Methodologies and Clinical Research. Springer US, p. 83-104 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Guidelines
Image analysis
Topology
2014

Is multi-model feature matching better for endoscopic motion estimation?

Xiang, X., Mirota, D., Reiter, A. & Hager, G. D. 2014 Computer-Assisted and Robotic Endoscopy - 1st International Workshop, CARE 2014 held in Conjunction with MICCAI 2014, Revised Selected Papers. Springer Verlag, Vol. 8899, p. 88-98 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8899)

Research output: Chapter in Book/Report/Conference proceedingChapter

Feature Matching
Multi-model
Motion Estimation
Motion estimation
Scale Invariant Feature Transform

Nuclear envelope in nuclear positioning and cell migration

Razafsky, D., Wirtz, D. & Hodzic, D. 2014 Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 773, p. 471-490 20 p. (Advances in Experimental Medicine and Biology; vol. 773)

Research output: Chapter in Book/Report/Conference proceedingChapter

Nuclear Envelope
Cell Movement
Tissue
Nuclear Matrix
Neurology

Octree grid topology-preserving geometric deformable model (OTGDM)

Bai, Y., Han, X. & Prince, J. L. 2014 Advances in Imaging and Electron Physics. Vol. 181, p. 1-34 34 p. (Advances in Imaging and Electron Physics; vol. 181)

Research output: Chapter in Book/Report/Conference proceedingChapter

preserving
topology
grids
Topology
computational grids

Quantification of the effects of mutations on receptor tyrosine kinase (RTK) activation in mammalian cells

He, L. & Hristova, K. Oct 15 2014 Receptor Tyrosine Kinases: Methods and Protocols. Springer New York, p. 81-87 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Receptor Protein-Tyrosine Kinases
Chemical activation
Cells
Mutation
Phosphorylation

Ultrasound-fluoroscopy registration for intraoperative dynamic dosimetry in prostate brachytherapy

Dehghan, E., Kuo, N., Deguet, A., Le, Y., Armour, E., Burdette, E. C., Song, D. Y., Fichtinger, G., Prince, J. L. & Lee, J. Jan 1 2014 Abdomen and Thoracic Imaging: An Engineering and Clinical Perspective. Springer US, p. 587-621 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluoroscopy
Brachytherapy
Dosimetry
Seed
Prostate
2013

3D tongue motion from tagged and cine MR images.

Xing, F., Woo, J., Murano, E. Z., Lee, J., Stone, M. & Prince, J. L. 2013 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 3 ed. Vol. 16, p. 41-48 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tongue
Magnetic Resonance Spectroscopy
Neck
Language
Head

Electrically addressable, biologically relevant surface-supported bilayers

Lin, J., Hristova, K. & Searson, P. C. Apr 30 2013 Handbook of Biofunctional Surfaces. Pan Stanford Publishing Pte. Ltd., p. 769-820 52 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechano-electric interactions and their role in electrical function of the heart

Jeremy Rice, J. & Kohl, P. Jan 1 2013 Electrical Diseases of the Heart: Volume 1: Basic Foundations and Primary Electrical Diseases. Springer-Verlag London Ltd, p. 157-175 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Electrophysiology
Mechanics

Scientific benchmarks for guiding macromolecular energy function improvement

Leaver-Fay, A., O'Meara, M. J., Tyka, M., Jacak, R., Song, Y., Kellogg, E. H., Thompson, J., Davis, I. W., Pache, R. A., Lyskov, S., Gray, J. J., Kortemme, T., Richardson, J. S., Havranek, J. J., Snoeyink, J., Baker, D. & Kuhlman, B. 2013 Methods in Enzymology. Vol. 523, p. 109-143 35 p. (Methods in Enzymology; vol. 523)

Research output: Chapter in Book/Report/Conference proceedingChapter

Benchmarking
Weights and Measures
Splines
Electron energy levels
Interpolation

String motif-based description of tool motion for detecting skill and gestures in robotic surgery.

Ahmidi, N., Gao, Y., Béjar, B., Vedula, S. S., Khudanpur, S., Vidal, R. & Hager, G. D. 2013 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 16, p. 26-33 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gestures
Robotics
Biomechanical Phenomena
Laparoscopy
Datasets

Surgical gesture segmentation and recognition.

Tao, L., Zappella, L., Hager, G. D. & Vidal, R. 2013 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 3 ed. Vol. 16, p. 339-346 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gestures
Biomechanical Phenomena
Cues
Robotics
Recognition (Psychology)

Using tagged MRI to quantify the 3D deformation of a cadaver brain in response to angular acceleration

Knutsen, A. K., Wang, W. T., McEntee, J. E., Zhuo, J., Gullapalli, R., Prince, J. L., Bayly, P. V., Butman, J. B. & Pham, D. L. Jan 1 2013 Computational Biomechanics for Medicine: Models, Algorithms and Implementation. Springer New York, p. 169-183 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Magnetic resonance
Brain
Imaging techniques
Tissue
Experiments

Using the Rosetta surface algorithm to predict protein structure at mineral surfaces

Pacella, M. S., Koo, D. C. E., Thottungal, R. A. & Gray, J. J. 2013 Methods in Enzymology. Vol. 532, p. 343-366 24 p. (Methods in Enzymology; vol. 532)

Research output: Chapter in Book/Report/Conference proceedingChapter

Minerals
Biomineralization
Proteins
Osteocalcin
Fusion reactions
2012

A systems biology view of adaptation in sensory mechanisms

Iglesias, P. A. 2012 Advances in Experimental Medicine and Biology. Vol. 736, p. 499-516 18 p. (Advances in Experimental Medicine and Biology; vol. 736)

Research output: Chapter in Book/Report/Conference proceedingChapter

Amoeba
Systems Biology
Chemotactic Factors
Bacteria
Research

Biophysics of molecular cell mechanics

Wirtz, D. 2012 Comprehensive Biophysics. Elsevier Inc., Vol. 7, p. 104-121 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics
Mechanics
Creep
Polarization
Wound Healing

Biophysics of selectin-mediated cell adhesion

Cheung, L. S. L., Raman, P. S., Wirtz, D. & Konstantopoulos, K. 2012 Comprehensive Biophysics. Elsevier Inc., Vol. 7, p. 10-32 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics
Selectins
Cell adhesion
Cell Adhesion
Dissociative Disorders

Hybrid tracking and mosaicking for information augmentation in retinal surgery.

Richa, R., Vágvölgyi, B., Balicki, M., Hager, G. D. & Taylor, R. H. 2012 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 15, p. 397-404 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medical Errors
Color
Rabbits
Mentoring
Surgeons

Introduction

Wirtz, D. 2012 Comprehensive Biophysics. Elsevier Inc., Vol. 7, p. 1 1 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Multi-object spring level sets (MUSCLE).

Lucas, B. C., Kazhdan, M. & Taylor, R. H. 2012 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 15, p. 495-503 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Masks
Air
Brain

Robotic path planning for surgeon skill evaluation in minimally-invasive sinus surgery.

Ahmidi, N., Hager, G. D., Ishii, L., Gallia, G. L. & Ishii, M. 2012 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 15, p. 471-478 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Minimally Invasive Surgical Procedures
Robotics
Surgeons
2011

Single-molecule analysis of cell-virus binding interactions

Dobrowsky, T. M. & Wirtz, D. 2011 Cell Signaling Reactions: Single-Molecular Kinetic Analysis. Springer Netherlands, p. 153-166 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Single-Cell Analysis
Virus Attachment
Viruses
Adhesion
Molecules

Visual guidance of an active handheld microsurgical tool

Becker, B. C., Voros, S., MacLachlan, R. A., Hager, G. D. & Riviere, C. N. 2011 Surgical Robotics: Systems Applications and Visions. Springer US, p. 355-368 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Micromanipulators
End effectors
Robotics
Cameras
Robots
2010

Simulating Filament Dynamics in Cellular Systems

Channels, W. E. & Iglesias, P. A. Apr 19 2010 Elements of Computational Systems Biology. John Wiley and Sons, p. 141-162 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2009

Gradient vector flow deformable models

Xu, C., Han, X. & Prince, J. L. 2009 Handbook of Medical Image Processing and Analysis. Elsevier Inc., p. 181-194 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Image processing and analysis in tagged cardiac mri

Kerwin, W. S., Osman, N. F. & Prince, J. L. 2009 Handbook of Medical Image Processing and Analysis. Elsevier Inc., p. 435-452 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Image analysis
Image processing

Optimal matching for prostate brachytherapy seed localization with dimension reduction.

Lee, J., Labat, C., Jain, A. K., Song, D. Y., Burdette, E. C., Fichtinger, G. & Prince, J. L. 2009 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 12, p. 59-66 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Brachytherapy
Prostate
Seeds
Fluoroscopy
X-Rays
2008

Ablation monitoring with elastography: 2D in-vivo and 3D ex-vivo studies.

Rivaz, H., Fleming, I., Assumpcao, L., Fichtinger, G., Hamper, U., Choti, M., Hager, G. & Boctor, E. 2008 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 11, p. 458-466 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Elasticity Imaging Techniques
Hot Temperature
Costs and Cost Analysis
Palpation
Physiologic Monitoring

Cooperative robot assistant for retinal microsurgery.

Fleming, I., Balicki, M., Koo, J., Iordachita, I., Mitchell, B., Handa, J., Hager, G. & Taylor, R. 2008 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 11, p. 543-550 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microsurgery
Retinal Vein
Biological Models
Human Engineering
Tremor

Localization of pelvic anatomical coordinate system using US/atlas registration for total hip replacement.

Foroughi, P., Song, D., Chintalapani, G., Taylor, R. H. & Fichtinger, G. 2008 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 11, p. 871-879 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hip Replacement Arthroplasties
Atlases
Pelvis
Fiducial Markers
Bone and Bones

Medical robotics and computer-integrated interventional medicine

Taylor, R. H. & Kazanzides, P. 2008 Biomedical Information Technology. Elsevier Inc., p. 393-416 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medicine
Robotics
Physiology
Robots
Operating rooms

Medical Robotics and Computer-Integrated Interventional Medicine

Taylor, R. H. & Kazanzides, P. 2008 Advances in Computers. Vol. 73, p. 219-260 42 p. (Advances in Computers; vol. 73)

Research output: Chapter in Book/Report/Conference proceedingChapter

Medicine
Robotics
Computer aided manufacturing
Computer aided design
Computer systems

Prostate brachytherapy seed localization with Gaussian blurring and camera self-calibration.

Lee, J., Liu, X., Prince, J. L. & Fichtinger, G. 2008 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 11, p. 636-643 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Brachytherapy
Calibration
Prostate
Seeds
Three-Dimensional Imaging
2007

Deformable 2D-3D registration of the pelvis with a limited field of view, using shape statistics.

Sadowsky, O., Chintalapani, G. & Taylor, R. H. 2007 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 10, p. 519-526 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pelvis
X-Rays
Atlases
Statistical Models
Principal Component Analysis

Small animal radiation research platform: imaging, mechanics, control and calibration.

Matinfar, M., Gray, O., Iordachita, I., Kennedy, C., Ford, E., Wong, J., Taylor, R. H. & Kazanzides, P. 2007 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 10, p. 926-934 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanics
Calibration
Radiation
Animal Models
Biological Phenomena

Statistical atlases of bone anatomy: construction, iterative improvement and validation.

Chintalapani, G., Ellingsen, L. M., Sadowsky, O., Prince, J. L. & Taylor, R. H. 2007 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 10, p. 499-506 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Atlases
Anatomy
Pelvis
Bone and Bones
Statistical Models

Telerobotic control by virtual fixtures for surgical applications

Li, M., Kapoor, A. & Taylor, R. H. 2007 Springer Tracts in Advanced Robotics. Vol. 31, p. 381-401 21 p. (Springer Tracts in Advanced Robotics; vol. 31)

Research output: Chapter in Book/Report/Conference proceedingChapter

Needles
Robots
Man machine systems
Collision avoidance
Multiobjective optimization

Toward optimal matching for 3D reconstruction of brachytherapy seeds.

Labat, C., Jain, A., Fichtinger, G. & Prince, J. 2007 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 10, p. 701-709 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Brachytherapy
Seeds
Linear Programming
Fluoroscopy
Art
2006

Real-time endoscopic mosaicking.

Seshamani, S., Lau, W. & Hager, G. 2006 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 9, p. 355-363 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Computer-Assisted Surgery
Minimally Invasive Surgical Procedures
Imagery (Psychotherapy)

Regulating cell shape during cytokinesis

Effler, J. C., Iglesias, P. A. & Robinson, D. N. Mar 16 2006 Lecture Notes in Control and Information Sciences. Vol. 329, p. 203-224 22 p. (Lecture Notes in Control and Information Sciences; vol. 329)

Research output: Chapter in Book/Report/Conference proceedingChapter

Ultrasound monitoring of tissue ablation via deformation model and shape priors.

Boctor, E., deOliveira, M., Choti, M., Ghanem, R., Taylor, R., Hager, G. & Fichtinger, G. 2006 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 9, p. 405-412 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Elasticity
Intraoperative Monitoring
Controlled Environment
Liver
Ultrasonography
2005

Automatic detection and segmentation of robot-assisted surgical motions.

Lin, H. C., Shafran, I., Murphy, T. E., Okamura, A. M., Yuh, D. D. & Hager, G. D. 2005 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 8, p. 802-810 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gestures
Robotics
Surgeons
Datasets

DaVinci canvas: a telerobotic surgical system with integrated, robot-assisted, laparoscopic ultrasound capability.

Leven, J., Burschka, D., Kumar, R., Zhang, G., Blumenkranz, S., Dai, X. D., Awad, M., Hager, G. D., Marohn, M., Choti, M., Hasser, C. & Taylor, R. H. 2005 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 8, p. 811-818 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Robotics
Endoscopes
Liver Neoplasms
Calibration

Electromagnetic tracker measurement error simulation and tool design.

Fischer, G. S. & Taylor, R. H. 2005 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 8, p. 73-80 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Electromagnetic Phenomena

Fully truncated cone-beam reconstruction on Pi lines using prior CT.

Ramamurthi, K., Strobel, N., Fahrig, R. & Prince, J. L. 2005 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 8, p. 631-638 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Artifacts

Lung deformation estimation and four-dimensional CT lung reconstruction.

Xu, S., Taylor, R. H., Fichtinger, G. & Cleary, K. 2005 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 8, p. 312-319 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Four-Dimensional Computed Tomography
Lung
Interventional Radiology
Swine
Tomography

Real-time quality control of tracked ultrasound.

Boctor, E. M., Iordachita, I., Fichtinger, G. & Hager, G. D. 2005 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 8, p. 621-630 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Quality Control
Mathematical Concepts
Calibration
In Vitro Techniques

Spatial motion constraints for robot assisted suturing using virtual fixtures.

Kapoor, A., Li, M. & Taylor, R. H. 2005 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 8, p. 89-96 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Feasibility Studies
Robotics
Needles
Joints
Surgeons

Using the fast marching method to extract curves with given global properties.

Tao, X., Davatzikos, C. & Prince, J. L. 2005 Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 8, p. 870-877 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Surface Properties
Weights and Measures
Brain