Whiting School of Engineering

Research Output

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2018

Atlas of acceleration-induced brain deformation from measurements in vivo

Gomez, A., Knutsen, A., Chan, D., Lu, Y. C., Pham, D. L., Bayly, P. & Prince, J. L., May 14 2018, Computational Biomechanics for Medicine: Measurements, Models, and Predictions. Springer International Publishing, p. 3-14 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomechanical guidance system for periacetabular osteotomy

Armand, M., Grupp, R., Murphy, R., Hegman, R., Armiger, R., Taylor, R. H., McArthur, B. & Lepisto, J., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 169-179 11 p. (Advances in Experimental Medicine and Biology; vol. 1093).

Research output: Chapter in Book/Report/Conference proceedingChapter

Exposing cell-itary confinement: Understanding the mechanisms of confined single cell migration

Wong, B. S., Mistriotis, P. & Konstantopoulos, K., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 139-157 19 p. (Advances in Experimental Medicine and Biology; vol. 1092).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanics of the cell nucleus

Kim, D. H., Hah, J. & Wirtz, D., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 41-55 15 p. (Advances in Experimental Medicine and Biology; vol. 1092).

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

Motion estimation with finite-element biomechanical models and tracking constraints from tagged MRI

Gomez, A., Xing, F., Chan, D., Pham, D. L., Bayly, P. & Prince, J. L., Apr 29 2017, Computational Biomechanics for Medicine: From Algorithms to Models and Applications. Springer International Publishing, p. 81-90 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Dynamics of Gradient Sensing and Chemotaxis

Iglesias, P. A., Jan 1 2016, Systems Cell Biology. Elsevier Inc., Vol. 4. p. 4-9 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medical robotics and computer-integrated surgery

Taylor, R. H., Menciassi, A., Fichtinger, G., Fiorini, P. & Dario, P., Jan 1 2016, Springer Handbook of Robotics. Springer International Publishing, p. 1657-1683 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Modeling excitable dynamics of chemotactic networks

Bhattacharya, S. & Iglesias, P. A., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1407. p. 397-415 19 p. (Methods in Molecular Biology; vol. 1407).

Research output: Chapter in Book/Report/Conference proceedingChapter

Sensing and estimation

Christensen, H. I. & Hager, G. D., Jan 1 2016, Springer Handbook of Robotics. Springer International Publishing, p. 91-112 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Geometric deformable models

Bai, Y., Han, X. & Prince, J. L., Jan 1 2015, Handbook of Biomedical Imaging: Methodologies and Clinical Research. Springer US, p. 83-104 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Frequency-domain analysis of tagged MRI and imaging strategies

Abd-Elmoniem, K. Z., Parthasarathy, V. & Prince, J. L., Jan 1 2014, Handbook of Imaging in Biological Mechanics. CRC Press, p. 23-32 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Is multi-model feature matching better for endoscopic motion estimation?

Xiang, X., Mirota, D., Reiter, A. & Hager, G. D., Jan 1 2014, Computer-Assisted and Robotic Endoscopy - 1st International Workshop, CARE 2014 held in Conjunction with MICCAI 2014, Revised Selected Papers. Luo, X., Soper, T., Reichl, T. & Mirota, D. (eds.). Springer Verlag, p. 88-98 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8899).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nuclear envelope in nuclear positioning and cell migration

Razafsky, D., Wirtz, D. & Hodzic, D., 2014, Cancer Biology and the Nuclear Envelope: Recent Advances May Elucidate Past Paradoxes. Springer New York LLC, p. 471-490 20 p. (Advances in Experimental Medicine and Biology; vol. 773).

Research output: Chapter in Book/Report/Conference proceedingChapter

Octree grid topology-preserving geometric deformable model (OTGDM)

Bai, Y., Han, X. & Prince, J. L., 2014, Advances in Imaging and Electron Physics. Academic Press Inc., p. 1-34 34 p. (Advances in Imaging and Electron Physics; vol. 181).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantification of the effects of mutations on receptor tyrosine kinase (RTK) activation in mammalian cells

He, L. & Hristova, K., Oct 15 2014, Receptor Tyrosine Kinases: Methods and Protocols. Springer New York, p. 81-87 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ultrasound-fluoroscopy registration for intraoperative dynamic dosimetry in prostate brachytherapy

Dehghan, E., Kuo, N., Deguet, A., Le, Y., Armour, E., Burdette, E. C., Song, D. Y., Fichtinger, G., Prince, J. L. & Lee, J., Jan 1 2014, Abdomen and Thoracic Imaging: An Engineering and Clinical Perspective. Springer US, p. 587-621 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Electrically addressable, biologically relevant surface-supported bilayers

Lin, J., Hristova, K. & Searson, P. C., Jan 1 2013, Handbook of Biofunctional Surfaces. Pan Stanford Publishing Pte. Ltd., p. 769-820 52 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechano-electric interactions and their role in electrical function of the heart

Rice, J. J. & Kohl, P., Mar 1 2013, Basic Foundations and Primary Electrical Diseases. Springer-Verlag London Ltd, Vol. 1. p. 157-175 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Scientific benchmarks for guiding macromolecular energy function improvement

Leaver-Fay, A., O'Meara, M. J., Tyka, M., Jacak, R., Song, Y., Kellogg, E. H., Thompson, J., Davis, I. W., Pache, R. A., Lyskov, S., Gray, J. J., Kortemme, T., Richardson, J. S., Havranek, J. J., Snoeyink, J., Baker, D. & Kuhlman, B., 2013, Methods in Protein Design. Academic Press Inc., p. 109-143 35 p. (Methods in Enzymology; vol. 523).

Research output: Chapter in Book/Report/Conference proceedingChapter

Using tagged MRI to quantify the 3D deformation of a cadaver brain in response to angular acceleration

Knutsen, A. K., Wang, W. T., McEntee, J. E., Zhuo, J., Gullapalli, R., Prince, J. L., Bayly, P. V., Butman, J. B. & Pham, D. L., Jan 1 2013, Computational Biomechanics for Medicine: Models, Algorithms and Implementation. Springer New York, p. 169-183 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Using the Rosetta surface algorithm to predict protein structure at mineral surfaces

Pacella, M. S., Koo, D. C. E., Thottungal, R. A. & Gray, J. J., 2013, Research Methods in Biomineralization Science. Academic Press Inc., p. 343-366 24 p. (Methods in Enzymology; vol. 532).

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

A systems biology view of adaptation in sensory mechanisms

Iglesias, P. A., Jan 23 2012, Advances in Systems Biology. p. 499-516 18 p. (Advances in Experimental Medicine and Biology; vol. 736).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics of molecular cell mechanics

Wirtz, D., Dec 1 2012, Comprehensive Biophysics. Elsevier Inc., Vol. 7. p. 104-121 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics of selectin-mediated cell adhesion

Cheung, L. S. L., Raman, P. S., Wirtz, D. & Konstantopoulos, K., Dec 1 2012, Comprehensive Biophysics. Elsevier Inc., Vol. 7. p. 10-32 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Introduction

Wirtz, D., Dec 1 2012, Comprehensive Biophysics. Elsevier Inc., Vol. 7. p. 1 1 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2011

Rosetta3: An object-oriented software suite for the simulation and design of macromolecules

Leaver-Fay, A., Tyka, M., Lewis, S. M., Lange, O. F., Thompson, J., Jacak, R., Kaufman, K., Renfrew, P. D., Smith, C. A., Sheffler, W., Davis, I. W., Cooper, S., Treuille, A., Mandell, D. J., Richter, F., Ban, Y. E. A., Fleishman, S. J., Corn, J. E., Kim, D. E., Lyskov, S. & 12 others, Berrondo, M., Mentzer, S., Popović, Z., Havranek, J. J., Karanicolas, J., Das, R., Meiler, J., Kortemme, T., Gray, J. J., Kuhlman, B., Baker, D. & Bradley, P., 2011, Methods in Enzymology. C ed. Academic Press Inc., p. 545-574 30 p. (Methods in Enzymology; vol. 487, no. C).

Research output: Chapter in Book/Report/Conference proceedingChapter

Single-molecule analysis of cell-virus binding interactions

Dobrowsky, T. M. & Wirtz, D., Dec 1 2011, Cell Signaling Reactions: Single-Molecular Kinetic Analysis. Springer Netherlands, p. 153-166 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Visual guidance of an active handheld microsurgical tool

Becker, B. C., Voros, S., MacLachlan, R. A., Hager, G. D. & Riviere, C. N., Dec 1 2011, Surgical Robotics: Systems Applications and Visions. Springer US, p. 355-368 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Simulating Filament Dynamics in Cellular Systems

Channels, W. E. & Iglesias, P. A., Apr 19 2010, Elements of Computational Systems Biology. John Wiley and Sons, p. 141-162 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2009

Gradient vector flow deformable models

Xu, C., Han, X. & Prince, J. L., Dec 1 2009, Handbook of Medical Image Processing and Analysis. Elsevier Inc., p. 181-194 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Image processing and analysis in tagged cardiac mri

Kerwin, W. S., Osman, N. F. & Prince, J. L., Dec 1 2009, Handbook of Medical Image Processing and Analysis. Elsevier Inc., p. 435-452 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2008

Chapter 15 Live-Cell Single-Molecule Force Spectroscopy

Dobrowsky, T. M., Panorchan, P., Konstantopoulos, K. & Wirtz, D., Dec 30 2008, Biophysical Tools for Biologists, Volume Two: In Vivo Techniques. Correia, J. & Detrich III, W. (eds.). p. 411-432 22 p. (Methods in Cell Biology; vol. 89).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 18 Sensing Cytoskeletal Mechanics by Ballistic Intracellular Nanorheology (BIN) Coupled with Cell Transfection

Thompson, M. S. & Wirtz, D., Dec 30 2008, Biophysical Tools for Biologists, Volume Two: In Vivo Techniques. Correia, J. & Detrich III, W. (eds.). p. 467-486 20 p. (Methods in Cell Biology; vol. 89).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 6 Forster Resonance Energy Transfer Measurements of Transmembrane Helix Dimerization Energetics

Mikhail, M. & Kalina, H., Dec 1 2008, Fluorescence Spectroscopy. Brand, L. & Johnson, M. (eds.). p. 107-127 21 p. (Methods in Enzymology; vol. 450).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanoelectrical interactions and their role in electrical function of the heart

Jeremy Rice, J. & Kohl, P., Dec 1 2008, Electrical Diseases of the Heart: Genetics, Mechanisms, Treatment, Prevention. Springer London, p. 145-160 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medical robotics and computer-integrated interventional medicine

Taylor, R. H. & Kazanzides, P., Dec 1 2008, Biomedical Information Technology. Elsevier Inc., p. 393-416 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medical Robotics and Computer-Integrated Interventional Medicine

Taylor, R. H. & Kazanzides, P., Dec 1 2008, Advances in COMPUTERS Emerging Technologies. Zelkowitz, M. (ed.). p. 219-260 42 p. (Advances in Computers; vol. 73).

Research output: Chapter in Book/Report/Conference proceedingChapter

2007

Probing Cellular Mechanical Responses to Stimuli Using Ballistic Intracellular Nanorheology

Panorchan, P., Lee, J. S. H., Daniels, B. R., Kole, T. P., Tseng, Y. & Wirtz, D., Jul 3 2007, Cell Mechanics. Wang, Y. & Discher, D. (eds.). p. 113,115-140 (Methods in Cell Biology; vol. 83).

Research output: Chapter in Book/Report/Conference proceedingChapter

Telerobotic control by virtual fixtures for surgical applications

Li, M., Kapoor, A. & Taylor, R. H., Aug 23 2007, Adavances in Telerobotics. Ferre, M., Buss, M., Melciorri, C. & Balaguer, C. (eds.). p. 381-401 21 p. (Springer Tracts in Advanced Robotics; vol. 31).

Research output: Chapter in Book/Report/Conference proceedingChapter

2006

Regulating cell shape during cytokinesis

Effler, J. C., Iglesias, P. A. & Robinson, D. N., Mar 16 2006, Control of Uncertain Systems: Modelling, Approximation, and Design: A Workshop on the Occasion of Keith Glovera Ts 60th Birthday. Francis, B., Willems, J. & Smith, M. (eds.). p. 203-224 22 p. (Lecture Notes in Control and Information Sciences; vol. 329).

Research output: Chapter in Book/Report/Conference proceedingChapter

2005

Automatic detection and segmentation of robot-assisted surgical motions.

Lin, H. C., Shafran, I., Murphy, T. E., Okamura, A. M., Yuh, D. D. & Hager, G., 2005, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 8. p. 802-810 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lung deformation estimation and four-dimensional CT lung reconstruction.

Xu, S., Taylor, R. H., Fichtinger, G. & Cleary, K., 2005, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 8. p. 312-319 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Visual modeling of dynamic gestures using 3D appearance and motion features

Ye, G., Corso, J. J. & Hager, G. D., Dec 1 2005, Real-Time Vision for Human-Computer Interaction. Springer US, p. 103-120 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2002

Kriging filters for space-time interpolation

Kerwin, W. S. & Prince, J. L., Jan 1 2002, Advances in Imaging and Electron Physics. Academic Press Inc., p. 139-193 55 p. (Advances in Imaging and Electron Physics; vol. 124).

Research output: Chapter in Book/Report/Conference proceedingChapter