Whiting School of Engineering

Research Output 1966 2019

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2018

Atlas of acceleration-induced brain deformation from measurements in vivo

Gomez, A., Knutsen, A., Chan, D., Lu, Y. C., Pham, D. L., Bayly, P. & Prince, J. L., May 14 2018, Computational Biomechanics for Medicine: Measurements, Models, and Predictions. Springer International Publishing, p. 3-14 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Atlases
brain
Brain
templates
acceleration measurement

Biomechanical guidance system for periacetabular osteotomy

Armand, M., Grupp, R., Murphy, R., Hegman, R., Armiger, R., Taylor, R. H., McArthur, B. & Lepisto, J., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 169-179 11 p. (Advances in Experimental Medicine and Biology; vol. 1093).

Research output: Chapter in Book/Report/Conference proceedingChapter

Osteotomy
Navigation
Planning
Navigation systems
Planning Techniques

Exposing cell-itary confinement: Understanding the mechanisms of confined single cell migration

Wong, B. S., Mistriotis, P. & Konstantopoulos, K., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 139-157 19 p. (Advances in Experimental Medicine and Biology; vol. 1092).

Research output: Chapter in Book/Report/Conference proceedingChapter

Machinery
Cell Movement
Plasticity
Tissue
Confined Spaces

Mechanics of the cell nucleus

Kim, D. H., Hah, J. & Wirtz, D., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 41-55 15 p. (Advances in Experimental Medicine and Biology; vol. 1092).

Research output: Chapter in Book/Report/Conference proceedingChapter

Control towers
Mechanics
Cell Nucleus
Cells
Cellular Microenvironment
2017

Motion estimation with finite-element biomechanical models and tracking constraints from tagged MRI

Gomez, A., Xing, F., Chan, D., Pham, D. L., Bayly, P. & Prince, J. L., Apr 29 2017, Computational Biomechanics for Medicine: From Algorithms to Models and Applications. Springer International Publishing, p. 81-90 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Motion estimation
Magnetic resonance imaging
2016

Medical robotics and computer-integrated surgery

Taylor, R. H., Menciassi, A., Fichtinger, G., Fiorini, P. & Dario, P., Jan 1 2016, Springer Handbook of Robotics. Springer International Publishing, p. 1657-1683 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Surgery
Robotics
Robots
Operating rooms
Planning

Modeling excitable dynamics of chemotactic networks

Bhattacharya, S. & Iglesias, P. A., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1407. p. 397-415 19 p. (Methods in Molecular Biology; vol. 1407).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemotactic Factors
Chemotaxis

Sensing and estimation

Christensen, H. I. & Hager, G. D., Jan 1 2016, Springer Handbook of Robotics. Springer International Publishing, p. 91-112 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Robotics
Sensors
Kalman filters
Parameter estimation
Feedback control
2015

Dynamics of Gradient Sensing and Chemotaxis

Iglesias, P. A., Jan 1 2015, Systems Cell Biology. Elsevier Inc., Vol. 4. p. 4-9 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemotaxis
Amoeba
Aptitude
Bacteria
Survival

Geometric deformable models

Bai, Y., Han, X. & Prince, J. L., Jan 1 2015, Handbook of Biomedical Imaging: Methodologies and Clinical Research. Springer US, p. 83-104 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Guidelines
Image analysis
Topology
2014

Frequency-domain analysis of tagged MRI and imaging strategies

Abd-Elmoniem, K. Z., Parthasarathy, V. & Prince, J. L., Jan 1 2014, Handbook of Imaging in Biological Mechanics. CRC Press, p. 23-32 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

frequency domain analysis
Frequency domain analysis
Magnetic resonance
magnetic resonance
Magnetic Resonance Spectroscopy

Is multi-model feature matching better for endoscopic motion estimation?

Xiang, X., Mirota, D., Reiter, A. & Hager, G., 2014, Computer-Assisted and Robotic Endoscopy - 1st International Workshop, CARE 2014 held in Conjunction with MICCAI 2014, Revised Selected Papers. Springer Verlag, Vol. 8899. p. 88-98 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8899).

Research output: Chapter in Book/Report/Conference proceedingChapter

Feature Matching
Multi-model
Motion Estimation
Motion estimation
Scale Invariant Feature Transform

Iterative most likely oriented point registration.

Billings, S. & Taylor, R. H., 2014, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 17. p. 178-185 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Femur

Nuclear envelope in nuclear positioning and cell migration

Razafsky, D., Wirtz, D. & Hodzic, D., 2014, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 773. p. 471-490 20 p. (Advances in Experimental Medicine and Biology; vol. 773).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nuclear Envelope
Cell Movement
Tissue
Nuclear Matrix
Neurology

Octree grid topology-preserving geometric deformable model (OTGDM)

Bai, Y., Han, X. & Prince, J. L., 2014, Advances in Imaging and Electron Physics. Vol. 181. p. 1-34 34 p. (Advances in Imaging and Electron Physics; vol. 181).

Research output: Chapter in Book/Report/Conference proceedingChapter

preserving
topology
grids
Topology
computational grids

Quantification of the effects of mutations on receptor tyrosine kinase (RTK) activation in mammalian cells

He, L. & Hristova, K. A., Oct 15 2014, Receptor Tyrosine Kinases: Methods and Protocols. Springer New York, p. 81-87 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Receptor Protein-Tyrosine Kinases
Chemical activation
Cells
Mutation
Phosphorylation

Ultrasound-fluoroscopy registration for intraoperative dynamic dosimetry in prostate brachytherapy

Dehghan, E., Kuo, N., Deguet, A., Le, Y., Armour, E., Burdette, E. C., Song, D. Y., Fichtinger, G., Prince, J. L. & Lee, J., Jan 1 2014, Abdomen and Thoracic Imaging: An Engineering and Clinical Perspective. Springer US, p. 587-621 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluoroscopy
Brachytherapy
Dosimetry
Seed
Prostate
2013

Electrically addressable, biologically relevant surface-supported bilayers

Lin, J., Hristova, K. A. & Searson, P. C., Apr 30 2013, Handbook of Biofunctional Surfaces. Pan Stanford Publishing Pte. Ltd., p. 769-820 52 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechano-electric interactions and their role in electrical function of the heart

Jeremy Rice, J. & Kohl, P., Jan 1 2013, Electrical Diseases of the Heart: Volume 1: Basic Foundations and Primary Electrical Diseases. Springer-Verlag London Ltd, p. 157-175 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Electrophysiology
Mechanics

Scientific benchmarks for guiding macromolecular energy function improvement

Leaver-Fay, A., O'Meara, M. J., Tyka, M., Jacak, R., Song, Y., Kellogg, E. H., Thompson, J., Davis, I. W., Pache, R. A., Lyskov, S., Gray, J. J., Kortemme, T., Richardson, J. S., Havranek, J. J., Snoeyink, J., Baker, D. & Kuhlman, B., 2013, Methods in Enzymology. Vol. 523. p. 109-143 35 p. (Methods in Enzymology; vol. 523).

Research output: Chapter in Book/Report/Conference proceedingChapter

Benchmarking
Weights and Measures
Splines
Electron energy levels
Interpolation

Surgical gesture segmentation and recognition.

Tao, L., Zappella, L., Hager, G. & Vidal, R., 2013, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 3 ed. Vol. 16. p. 339-346 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gestures
Biomechanical Phenomena
Cues
Robotics
Recognition (Psychology)

Using tagged MRI to quantify the 3D deformation of a cadaver brain in response to angular acceleration

Knutsen, A. K., Wang, W. T., McEntee, J. E., Zhuo, J., Gullapalli, R., Prince, J. L., Bayly, P. V., Butman, J. B. & Pham, D. L., Jan 1 2013, Computational Biomechanics for Medicine: Models, Algorithms and Implementation. Springer New York, p. 169-183 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Magnetic resonance
Brain
Imaging techniques
Tissue
Experiments

Using the Rosetta surface algorithm to predict protein structure at mineral surfaces

Pacella, M. S., Koo, D. C. E., Thottungal, R. A. & Gray, J. J., 2013, Methods in Enzymology. Vol. 532. p. 343-366 24 p. (Methods in Enzymology; vol. 532).

Research output: Chapter in Book/Report/Conference proceedingChapter

Minerals
Biomineralization
Proteins
Osteocalcin
Fusion reactions
2012

A systems biology view of adaptation in sensory mechanisms

Iglesias, P. A., 2012, Advances in Experimental Medicine and Biology. Vol. 736. p. 499-516 18 p. (Advances in Experimental Medicine and Biology; vol. 736).

Research output: Chapter in Book/Report/Conference proceedingChapter

Amoeba
Systems Biology
Chemotactic Factors
Bacteria
Research

Biophysics of molecular cell mechanics

Wirtz, D., 2012, Comprehensive Biophysics. Elsevier Inc., Vol. 7. p. 104-121 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics
Mechanics
Creep
Polarization
Wound Healing

Biophysics of selectin-mediated cell adhesion

Cheung, L. S. L., Raman, P. S., Wirtz, D. & Konstantopoulos, K., 2012, Comprehensive Biophysics. Elsevier Inc., Vol. 7. p. 10-32 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics
Selectins
Cell adhesion
Cell Adhesion
Dissociative Disorders

Direct 3D ultrasound to video registration using photoacoustic effect.

Cheng, A., Kang, J. U., Taylor, R. H. & Boctor, E., 2012, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 15. p. 552-559 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Equipment and Supplies

Hybrid tracking and mosaicking for information augmentation in retinal surgery.

Richa, R., Vágvölgyi, B., Balicki, M., Hager, G. & Taylor, R. H., 2012, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 15. p. 397-404 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medical Errors
Color
Rabbits
Mentoring
Surgeons

Introduction

Wirtz, D., 2012, Comprehensive Biophysics. Elsevier Inc., Vol. 7. p. 1 1 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Multi-object geodesic active contours (MOGAC).

Lucas, B. C., Kazhdan, M. & Taylor, R. H., 2012, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 15. p. 404-412 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell Tracking
Masks
Brain
Power (Psychology)

Multi-object spring level sets (MUSCLE).

Lucas, B. C., Kazhdan, M. & Taylor, R. H., 2012, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 15. p. 495-503 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Masks
Air
Brain

Robotic path planning for surgeon skill evaluation in minimally-invasive sinus surgery.

Ahmidi, N., Hager, G., Ishii, L. E., Gallia, G. L. & Ishii, M., 2012, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 15. p. 471-478 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Minimally Invasive Surgical Procedures
Robotics
Surgeons
2011

Deformable registration of high-resolution and cine MR tongue images.

Woo, J., Stone, M. & Prince, J. L., 2011, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 14. p. 556-563 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tongue
Cine Magnetic Resonance Imaging
Observer Variation
Cues
Magnetic Resonance Imaging

Iterative refinement of point correspondences for 3D statistical shape models.

Seshamani, S., Chintalapani, G. & Taylor, R. H., 2011, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 14. p. 417-425 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Statistical Models
Atlases
Passive Cutaneous Anaphylaxis
Pelvis
Anatomy

Single-molecule analysis of cell-virus binding interactions

Dobrowsky, T. M. & Wirtz, D., 2011, Cell Signaling Reactions: Single-Molecular Kinetic Analysis. Springer Netherlands, p. 153-166 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Single-Cell Analysis
Virus Attachment
Viruses
Adhesion
Molecules

Spatio-temporal registration of multiple trajectories.

Padoy, N. & Hager, G., 2011, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 14. p. 145-152 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gestures
Automation
Datasets

SpringLS: a deformable model representation to provide interoperability between meshes and level sets.

Lucas, B. C., Kazhdan, M. & Taylor, R. H., 2011, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 14. p. 442-450 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Atlases
Pelvis
Joints
Brain

Visual guidance of an active handheld microsurgical tool

Becker, B. C., Voros, S., MacLachlan, R. A., Hager, G. & Riviere, C. N., 2011, Surgical Robotics: Systems Applications and Visions. Springer US, p. 355-368 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Micromanipulators
End effectors
Robotics
Cameras
Robots
2010

Adaptive multispectral illumination for retinal microsurgery.

Sznitman, R., Rother, D., Handa, J., Gehlbach, P., Hager, G. & Taylor, R. H., 2010, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 3 ed. Vol. 13. p. 465-472 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microsurgery
Lighting
Light
Phototoxic Dermatitis
Retina

A statistical approach for achievable dose querying in IMRT planning.

Simari, P., Wu, B., Jacques, R., King, A., McNutt, T., Taylor, R. H. & Kazhdan, M., 2010, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 3 ed. Vol. 13. p. 521-528 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Head and Neck Neoplasms
Quality Control
Prescriptions
Databases
Therapeutics

Augmenting capsule endoscopy diagnosis: a similarity learning approach.

Seshamani, S., Kumar, R., Dassopoulos, T., Mullin, G. & Hager, G., 2010, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 13. p. 454-462 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Capsule Endoscopy
Learning
Politics
Crohn Disease

Micro-force sensing in robot assisted membrane peeling for vitreoretinal surgery.

Balicki, M., Uneri, A., Iordachita, I., Handa, J., Gehlbach, P. & Taylor, R., 2010, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 3 ed. Vol. 13. p. 303-310 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Vitreoretinal Surgery
Retinal Hemorrhage
Sensory Feedback
Retinal Perforations
Membranes

Simulating Filament Dynamics in Cellular Systems

Channels, W. E. & Iglesias, P. A., Apr 19 2010, Elements of Computational Systems Biology. John Wiley and Sons, p. 141-162 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Surgical task and skill classification from eye tracking and tool motion in minimally invasive surgery.

Ahmidi, N., Hager, G., Ishii, L. E., Fichtinger, G., Gallia, G. L. & Ishii, M., 2010, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 3 ed. Vol. 13. p. 295-302 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Minimally Invasive Surgical Procedures
Anatomic Models
Cadaver
Anatomy
Surgeons

Tracked ultrasound elastography (TrUE).

Foroughi, P., Rivaz, H., Fleming, I. N., Hager, G. & Boctor, E., 2010, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 13. p. 9-16 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Elasticity Imaging Techniques
Elasticity
Optical Devices
Palpation
Electromagnetic Phenomena
2009

A meta registration framework for lesion matching.

Seshamani, S., Rajan, P., Kumar, R., Girgis, H., Dassopoulos, T., Mullin, G. & Hager, G., 2009, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 12. p. 582-589 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Capsule Endoscopy
Crohn Disease
Anatomy
Databases

A shape relationship descriptor for radiation therapy planning.

Kazhdan, M., Simari, P., McNutt, T., Wu, B., Jacques, R., Chuang, M. & Taylor, R. H., 2009, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 2 ed. Vol. 12. p. 100-108 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Radiotherapy
Organs at Risk
Tumor Burden
Quality Control
Therapeutics

Belief propagation based segmentation of white matter tracts in DTI.

Bazin, P. L., Bogovic, J., Reich, D., Prince, J. L. & Pham, D. L., 2009, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 12. p. 943-950 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Atlases
Brain
Multiple Sclerosis
Healthy Volunteers
White Matter

Data-derived models for segmentation with application to surgical assessment and training.

Varadarajan, B., Reiley, C., Lin, H., Khudanpur, S. & Hager, G., 2009, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Pt 1 ed. Vol. 12. p. 426-434 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gestures
Minimally Invasive Surgical Procedures
Robotics
Surgeons

Gradient vector flow deformable models

Xu, C., Han, X. & Prince, J. L., 2009, Handbook of Medical Image Processing and Analysis. Elsevier Inc., p. 181-194 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter