Whiting School of Engineering

Research Output

Article

Electrical measurements of bilayer membranes formed by Langmuir-Blodgett deposition on single-crystal silicon

Nikolov, V., Lin, J., Merzlyakov, M., Hristova, K. & Searson, P. C., Dec 18 2007, In : Langmuir. 23, 26, p. 13040-13045 6 p.

Research output: Contribution to journalArticle

ELECTROMAGNETIC SCATTERING THEORY.

Bird, J. F. & Farrell, R. A., Jan 1 1986, In : Johns Hopkins APL Technical Digest (Applied Physics Laboratory). 7, 1, p. 58-72 15 p.

Research output: Contribution to journalArticle

Enabling machine learning in X-ray-based procedures via realistic simulation of image formation

Unberath, M., Zaech, J. N., Gao, C., Bier, B., Goldmann, F., Lee, S. C., Fotouhi, J., Taylor, R., Armand, M. & Navab, N., Sep 1 2019, In : International Journal of Computer Assisted Radiology and Surgery. 14, 9, p. 1517-1528 12 p.

Research output: Contribution to journalArticle

Endoplasmic reticulum lipid flux influences enterocyte nuclear morphology and lipid-dependent transcriptional responses

Zeituni, E. M., Wilson, M. H., Zheng, X., Iglesias, P. A., Sepanski, M. A., Siddiqi, M. A., Anderson, J. L., Zheng, Y. & Farber, S. A., Nov 4 2016, In : Journal of Biological Chemistry. 291, 45, p. 23804-23816 13 p.

Research output: Contribution to journalArticle

Energetics of ErbB1 transmembrane domain dimerization in lipid bilayers

Chen, L., Merzlyakov, M., Cohen, T., Shai, Y. & Hristova, K., Jan 1 2009, In : Biophysical journal. 96, 11, p. 4622-4630 9 p.

Research output: Contribution to journalArticle

Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling

Gomez-Soler, M., Gehring, M. P., Lechtenberg, B. C., Zapata-Mercado, E., Hristova, K. & Pasquale, E. B., May 31 2019, In : Journal of Biological Chemistry. 294, 22, p. 8791-8805 15 p.

Research output: Contribution to journalArticle

Enhanced Viscoelasticity of Human Cystic Fibrotic Sputum Correlates with Increasing Microheterogeneity in Particle Transport

Dawson, M., Wirtz, D. & Hanes, J., Dec 12 2003, In : Journal of Biological Chemistry. 278, 50, p. 50393-50401 9 p.

Research output: Contribution to journalArticle

Enhancement of cell proliferation in various mammalian cell lines by gene insertion of a cyclin-dependent kinase homolog

Jaluria, P., Betenbaugh, M., Konstantopoulos, K. & Shiloach, J., Oct 18 2007, In : BMC biotechnology. 7, 71.

Research output: Contribution to journalArticle

Entropy formula for nonlinear systems

Iglesias, P. A. & Peters, M. A., Nov 2000, In : Journal of the Franklin Institute. 337, 7, p. 859-874 16 p.

Research output: Contribution to journalArticle

Enzymatic excision of uracil residues in nucleosomes depends on the local DNA structure and dynamics

Ye, Y., Stahley, M. R., Xu, J., Friedman, J. I., Sun, Y., McKnight, J. N., Gray, J. J., Bowman, G. D. & Stivers, J. T., Jul 31 2012, In : Biochemistry. 51, 30, p. 6028-6038 11 p.

Research output: Contribution to journalArticle

Enzyme replacement therapy prevents dental defects in a model of hypophosphatasia

McKee, M. D., Nakano, Y., Masica, D. L., Gray, J. J., Lemire, I., Heft, R., Whyte, M. P., Crine, P. & Millán, J. L., Apr 1 2011, In : Journal of Dental Research. 90, 4, p. 470-476 7 p.

Research output: Contribution to journalArticle

EphA2 receptor unliganded dimers suppress EphA2 pro-tumorigenic signaling

Singh, D. R., Ahmed, F., King, C., Gupta, N., Salotto, M., Pasquale, E. B. & Hristova, K., Nov 6 2015, In : Journal of Biological Chemistry. 290, 45, p. 27271-27279 9 p.

Research output: Contribution to journalArticle

Epithelial damage in rabbit corneas exposed to CO2 laser radiation

Bargeron, C. B., Deters, O. J., Farrell, R. A. & McCally, R. L., Jan 1989, In : Health physics. 56, 1, p. 85-95 11 p.

Research output: Contribution to journalArticle

Epithelial-mesenchymal transition and fibrosis are mutually exclusive reponses in shear-activated proximal tubular epithelial cells

Grabias, B. M. & Konstantopoulos, K., Oct 1 2012, In : FASEB Journal. 26, 10, p. 4131-4141 11 p.

Research output: Contribution to journalArticle

Ergosterol regulates sterol regulatory element binding protein (SREBP) cleavage in fission yeast

Porter, J. R., Burg, J. S., Espenshade, P. J. & Iglesias, P. A., Dec 24 2010, In : Journal of Biological Chemistry. 285, 52, p. 41051-41061 11 p.

Research output: Contribution to journalArticle

Erratum: A Comprehensive, High-Resolution Map of a Gene's Fitness Landscape (Molecular Biology and Evolution (2014) 31 (1581-1592) DOI: 10.1093/molbev/msu081)

Firnberg, E., Labonte, J. W., Gray, J. J. & Ostermeier, M., May 1 2016, In : Molecular Biology and Evolution. 33, 5, p. 1378 1 p.

Research output: Contribution to journalArticle

E-selectin-mediated rolling facilitates pancreatic cancer cell adhesion to hyaluronic acid

Shea, D. J., Li, Y. W., Stebe, K. J. & Konstantopoulos, K., Nov 2017, In : FASEB Journal. 31, 11, p. 5078-5086 9 p.

Research output: Contribution to journalArticle

E-selectin receptors on human leukocytes

Nimrichter, L., Burdick, M. M., Aoki, K., Laroy, W., Fierro, M. A., Hudson, S. A., Von Seggern, C. E., Cotter, R. J., Bochner, B. S., Tiemeyer, M., Konstantopoulos, K. & Schnaar, R. L., Nov 1 2008, In : Blood. 112, 9, p. 3744-3752 9 p.

Research output: Contribution to journalArticle

Estimation and application of spatially variable noise fields in diffusion tensor imaging

Landman, B. A., Bazin, P. L. & Prince, J. L., Jul 1 2009, In : Magnetic Resonance Imaging. 27, 6, p. 741-751 11 p.

Research output: Contribution to journalArticle

Estimation of fiber orientations using neighborhood information

Ye, C., Zhuo, J., Gullapalli, R. P. & Prince, J. L., Aug 1 2016, In : Medical Image Analysis. 32, p. 243-256 14 p.

Research output: Contribution to journalArticle

Estimation of pulsatile ocular blood flow from intraocular pressure

Silver, D. M., Farrell, R. A., Langham, M. E., O'Brien, V. & Schilder, P., Mar 1989, In : Acta Ophthalmologica. 67, 191 S, p. 25-29 5 p.

Research output: Contribution to journalArticle

Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis

Carass, A., Roy, S., Gherman, A., Reinhold, J. C., Jesson, A., Arbel, T., Maier, O., Handels, H., Ghafoorian, M., Platel, B., Birenbaum, A., Greenspan, H., Pham, D. L., Crainiceanu, C. M., Calabresi, P. A., Prince, J. L., Roncal, W. R. G., Shinohara, R. T. & Oguz, I., Dec 1 2020, In : Scientific reports. 10, 1, 8242.

Research output: Contribution to journalArticle

Open Access

Evaluation of a computerized measurement technique for joint alignment before and during periacetabular osteotomy

Armiger, R. S., Armand, M., Lepisto, J., Minhas, D., Tallroth, K., Mears, S. C., Waites, M. D. & Taylor, R. H., Jul 1 2007, In : Computer Aided Surgery. 12, 4, p. 215-224 10 p.

Research output: Contribution to journalArticle

Evaluation of a system for high-accuracy 3D image-based registration of endoscopic video to c-arm cone-beam CT for image-guided skull base surgery

Mirota, D. J., Uneri, A., Schafer, S., Nithiananthan, S., Reh, D. D., Ishii, M., Gallia, G. L., Taylor, R. H., Hager, G. D. & Siewerdsen, J. H., Jan 1 2013, In : IEEE transactions on medical imaging. 32, 7, p. 1215-1226 12 p., 6422396.

Research output: Contribution to journalArticle

Evaluation of platelet antagonists in in vitro flow models of thrombosis.

McCarty, O. J. T., Abulencia, J. P., Mousa, S. A. & Konstantopoulos, K., 2004, In : Methods in Molecular Medicine. 93, p. 21-34 14 p.

Research output: Contribution to journalArticle

Evaluation of sparse-view reconstruction from flat-panel-detector cone-beam CT

Bian, J., Siewerdsen, J. H., Han, X., Sidky, E. Y., Prince, J. L., Pelizzari, C. A. & Pan, X., Nov 21 2010, In : Physics in medicine and biology. 55, 22, p. 6575-6599 25 p.

Research output: Contribution to journalArticle

Evolution of cellular morpho-phenotypes in cancer metastasis

Wu, P. H., Phillip, J. M., Khatau, S. B., Chen, W. C., Stirman, J., Rosseel, S., Tschudi, K., Van Patten, J., Wong, M., Gupta, S., Baras, A. S., Leek, J. T., Maitra, A. & Wirtz, D., Dec 17 2015, In : Scientific reports. 5, 18437.

Research output: Contribution to journalArticle

Excitable behavior in amoeboid chemotaxis

Shi, C. & Iglesias, P. A., Sep 1 2013, In : Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 5, 5, p. 631-642 12 p.

Research output: Contribution to journalArticle

Excitable signal transduction networks in directed cell migration

Devreotes, P. N., Bhattacharya, S., Edwards, M., Iglesias, P. A., Lampert, T. & Miao, Y., Oct 6 2017, In : Annual Review of Cell and Developmental Biology. 33, p. 103-125 23 p.

Research output: Contribution to journalArticle

Exogenous eosinophil activation converts PSGL-1-dependent binding to CD18-dependent stable adhesion to platelets in shear flow

McCarty, O. J. T., Tien, N., Bochner, B. S. & Konstantopoulos, K., May 1 2003, In : American Journal of Physiology - Cell Physiology. 284, 5 53-5, p. C1223-C1234

Research output: Contribution to journalArticle

Expanding the toolkit for membrane protein modeling in Rosetta

Leman, J. K., Mueller, B. K. & Gray, J. J., 2017, In : Bioinformatics. 33, 5, p. 754-756 3 p.

Research output: Contribution to journalArticle

Exploiting nucleation and growth in the synthesis and electrical passivation of CdSe quantum dots

Galloway, J. F., Park, J., Lee, K. H., Wirtz, D. & Searson, P. C., Apr 1 2009, In : Science of Advanced Materials. 1, 1, p. 93-100 8 p.

Research output: Contribution to journalArticle

Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27

Kilambi, K. P., Pacella, M. S., Xu, J., Labonte, J. W., Porter, J. R., Muthu, P., Drew, K., Kuroda, D., Schueler-Furman, O., Bonneau, R. & Gray, J. J., Dec 1 2013, In : Proteins: Structure, Function and Bioinformatics. 81, 12, p. 2201-2209 9 p.

Research output: Contribution to journalArticle

Extreme deep white matter hyperintensity volumes are associated with African American race

Nyquist, P. A., Bilgel, M. S., Gottesman, R., Yanek, L. R., Moy, T. F., Becker, L. C., Cuzzocreo, J., Prince, J., Yousem, D. M., Becker, D. M., Kral, B. G. & Vaidya, D., Jun 2014, In : Cerebrovascular Diseases. 37, 4, p. 244-250 7 p.

Research output: Contribution to journalArticle

Factors associated with physicians' prescriptions for rheumatoid arthritis drugs not filled by patients

Kan, H. J., Dyagilev, K., Schulam, P., Saria, S., Kharrazi, H., Bodycombe, D., Molta, C. T. & Curtis, J. R., May 2 2018, In : Arthritis Research and Therapy. 20, 1, 79.

Research output: Contribution to journalArticle

Fading memory and stability

Zang, G. & Iglesias, P. A., Sep 1 2004, In : Journal of the Franklin Institute. 340, 6-7, p. 489-502 14 p.

Research output: Contribution to journalArticle

Fast block-based motion estimation via DC matching

Tu, C., Tran, T. D., Prince, J. L. & Topiwala, P., Jan 1 2000, In : Conference Record of the Asilomar Conference on Signals, Systems and Computers. 2, p. 1379-1383 5 p.

Research output: Contribution to journalArticle

Fast determination of regional myocardial strain fields from tagged cardiac images using harmonic phase MRI

Garot, J., Bluemke, D. A., Osman, N. F., Rochitte, C. E., McVeigh, E. R., Zerhouni, E. A., Prince, J. L. & Lima, J. A. C., Mar 7 2000, In : Circulation. 101, 9, p. 981-988 8 p.

Research output: Contribution to journalArticle

Open Access

Fast gapped-read alignment with Bowtie 2

Langmead, B. & Salzberg, S. L., Apr 1 2012, In : Nature Methods. 9, 4, p. 357-359 3 p.

Research output: Contribution to journalArticle

Fast tracking of cardiac motion using 3D-HARP

Pan, L., Prince, J. L., Lima, J. A. C. & Osman, N. F., Aug 1 2005, In : IEEE Transactions on Biomedical Engineering. 52, 8, p. 1425-1435 11 p.

Research output: Contribution to journalArticle

FGFR3 dimer stabilization due to a single amino acid pathogenic mutation

Li, E., You, M. & Hristova, K., Feb 24 2006, In : Journal of molecular biology. 356, 3, p. 600-612 13 p.

Research output: Contribution to journalArticle

FGFR3 heterodimerization in achondroplasia, the most common form of human dwarfism

He, L., Shobnam, N., Wimley, W. C. & Hristova, K., Apr 15 2011, In : Journal of Biological Chemistry. 286, 15, p. 13272-13281 10 p.

Research output: Contribution to journalArticle

FGFR3 transmembrane domain interactions persist in the presence of its extracellular domain

Sarabipour, S. & Hristova, K., Jul 2 2013, In : Biophysical journal. 105, 1, p. 165-171 7 p.

Research output: Contribution to journalArticle