Whiting School of Engineering

Research Output

Cardiac electromechanical models: From cell to organ

Trayanova, N. A. & Rice, J. J., Dec 1 2011, In : Frontiers in Physiology. 2 AUG, Article 43.

Research output: Contribution to journalArticle

Cardiac material markers from tagged MR images

Kerwin, W. S. & Prince, J. L., Jan 1 1998, In : Medical image analysis. 2, 4, p. 339-353 15 p.

Research output: Contribution to journalArticle

Cardiac motion estimation from MR image sequences

Prince, J. L., Dec 1 2010, In : Proceedings of SPIE - The International Society for Optical Engineering. 1351, p. 321-330 10 p.

Research output: Contribution to journalConference article

Cardiac motion simulator for tagged MRI

Waks, E., Prince, J. L. & Douglas, A. S., Jan 1 1996, p. 182-191. 10 p.

Research output: Contribution to conferencePaper

Cardiac motion tracking using CINE harmonic phase (HARP) magnetic resonance imaging

Osman, N. F., Kerwin, W. S., McVeigh, E. R. & Prince, J. L., Dec 17 1999, In : Magnetic resonance in medicine. 42, 6, p. 1048-1060 13 p.

Research output: Contribution to journalArticle

Cardiovascular magnetic resonance: Deeper insights through bioengineering

Young, A. A. & Prince, J. L., Jul 1 2013, In : Annual Review of Biomedical Engineering. 15, p. 433-461 29 p.

Research output: Contribution to journalReview article

C-arm distortion correction using patient CT as a fiducial

Chintalapani, G. & Taylor, R. H., Nov 27 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. p. 1180-1183 4 p. 4193502. (2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

C-arm pose estimation using a set of coplanar ellipses in correspondence

Ayad, M. S., Lee, J., Deguet, A., Burdette, E. C. & Prince, J. L., Aug 9 2010, 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings. p. 1401-1404 4 p. 5490260. (2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Catheter tracking in an interventional photoacoustic surgical system

Cheng, A., Itsarachaiyot, Y., Kim, Y., Zhang, H. K., Taylor, R. H. & Boctor, E., 2017, Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135. 1013527

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Catheter tracking in an interventional photoacoustic surgical system

Cheng, A., Kim, Y., Zhang, H. K., Taylor, R. H. & Boctor, E., Dec 16 2016, 2016 Conference on Lasers and Electro-Optics, CLEO 2016. Institute of Electrical and Electronics Engineers Inc., 7787359

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation

Santiago-Frangos, A., Fröhlich, K. S., Jeliazkov, J. R., Małecka, E. M., Marino, G., Gray, J. J., Luisi, B. F., Woodson, S. & Hardwick, S. W., May 28 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 166, 22, p. 10978-10987 10 p.

Research output: Contribution to journalArticle

Open Access

CCR3-active chemokines promote rapid detachment of eosinophils from VCAM-1 in vitro

Tachimoto, H., Burdick, M. M., Hudson, S. A., Kikuchi, M., Konstantopoulos, K. & Bochner, B. S., Sep 1 2000, In : Journal of Immunology. 165, 5, p. 2748-2754 7 p.

Research output: Contribution to journalArticle

Open Access

CD44 on LS174T colon carcinoma cells possesses E-selectin ligand activity

Hanley, W. D., Burdick, M. M., Konstantopoulos, K. & Sackstein, R., Jul 1 2005, In : Cancer Research. 65, 13, p. 5812-5817 6 p.

Research output: Contribution to journalArticle

Cdc42 mediates nucleus movement and MTOC polarization in Swiss 3T3 fibroblasts under mechanical shear stress

Lee, J. S. H., Chang, M. I., Tseng, Y. & Wirtz, D., Feb 1 2005, In : Molecular biology of the cell. 16, 2, p. 871-880 10 p.

Research output: Contribution to journalArticle

Cell biology: Chromosome alignment and segregation regulated by ubiquitination of survivin

Vong, Q. P., Cao, K., Li, H. Y., Iglesias, P. A. & Zheng, Y., Dec 2 2005, In : Science. 310, 5753, p. 1499-1504 6 p.

Research output: Contribution to journalArticle

Cell memory and adaptation in chemotaxis

Huang, C. H. & Iglesias, P. A., Oct 28 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 43, p. 15287-15288 2 p.

Research output: Contribution to journalComment/debate

Cell migration without a lamellipodium: Translation of actin dynamics into cell movement mediated by tropomyosin

Gupton, S. L., Anderson, K. L., Kole, T. P., Fischer, R. S., Ponti, A., Hitchcock-DeGregori, S. E., Danuser, G., Fowler, V. M., Wirtz, D., Hanein, D. & Waterman-Storer, C. M., Feb 14 2005, In : Journal of Cell Biology. 168, 4, p. 619-631 13 p.

Research output: Contribution to journalArticle

Cell sensing and decision-making in confinement: The role of TRPM7 in a tug of war between hydraulic pressure and cross-sectional area

Zhao, R., Afthinos, A., Zhu, T., Mistriotis, P., Li, Y., Serra, S. A., Zhang, Y., Yankaskas, C. L., He, S., Valverde, M. A., Sun, S. X. & Konstantopoulos, K., Jul 24 2019, In : Science Advances. 5, 7, eaaw7243.

Research output: Contribution to journalArticle

Open Access

Cell shape regulation through mechanosensory feedback control

Mohan, K., Luo, T., Robinson, D. & Iglesias, P. A., Aug 6 2015, In : Journal of the Royal Society Interface. 12, 109, 20150512.

Research output: Contribution to journalArticle

Cell tension and mechanical regulation of cell volume

Gonzalez, N. P., Tao, J., Rochman, N. D., Vig, D., Chiu, E., Wirtz, D. & Sun, S. X., Oct 15 2018, In : Molecular Biology of the Cell. 29, 21, p. 2591-2600 10 p.

Research output: Contribution to journalArticle

Cellular/tissue engineering

Burdick, M. M., McCarty, O. J. T., Jadhav, S. & Konstantopoulos, K., Jul 14 2001, In : IEEE Engineering in Medicine and Biology Magazine. 20, 3, p. 86-91 6 p.

Research output: Contribution to journalReview article

Cerebellum parcellation with convolutional neural networks

Han, S., He, Y., Carass, A., Ying, S. H. & Prince, J. L., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109490K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Challenges in image-guided therapy system design

DiMaio, S., Kapur, T., Cleary, K., Aylward, S., Kazanzides, P., Vosburgh, K., Ellis, R., Duncan, J., Farahani, K., Lemke, H., Peters, T., Lorensen, W. B., Gobbi, D., Haller, J., Clarke, L. L., Pizer, S., Taylor, R., Galloway, R., Fichtinger, G., Hata, N. & 4 others, Lawson, K., Tempany, C., Kikinis, R. & Jolesz, F., Aug 16 2007, In : NeuroImage. 37, SUPPL. 1, p. S144-S151

Research output: Contribution to journalArticle

Changes in Aβ biomarkers and associations with APOE genotype in 2 longitudinal cohorts

Resnick, S. M., Bilgel, M., Moghekar, A., An, Y., Cai, Q., Wang, M. C., Thambisetty, M., Prince, J. L., Zhou, Y., Soldan, A., Wong, D. F., O'Brien, R. J., Ferrucci, L. & Albert, M. S., Jan 1 2015, In : Neurobiology of Aging. 36, 8, p. 2333-2339 7 p.

Research output: Contribution to journalArticle

Chapter 15 Live-Cell Single-Molecule Force Spectroscopy

Dobrowsky, T. M., Panorchan, P., Konstantopoulos, K. & Wirtz, D., Dec 30 2008, Biophysical Tools for Biologists, Volume Two: In Vivo Techniques. Correia, J. & Detrich III, W. (eds.). p. 411-432 22 p. (Methods in Cell Biology; vol. 89).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 18 Sensing Cytoskeletal Mechanics by Ballistic Intracellular Nanorheology (BIN) Coupled with Cell Transfection

Thompson, M. S. & Wirtz, D., Dec 30 2008, Biophysical Tools for Biologists, Volume Two: In Vivo Techniques. Correia, J. & Detrich III, W. (eds.). p. 467-486 20 p. (Methods in Cell Biology; vol. 89).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 6 Forster Resonance Energy Transfer Measurements of Transmembrane Helix Dimerization Energetics

Mikhail, M. & Kalina, H., Dec 1 2008, Fluorescence Spectroscopy. Brand, L. & Johnson, M. (eds.). p. 107-127 21 p. (Methods in Enzymology; vol. 450).

Research output: Chapter in Book/Report/Conference proceedingChapter

Characterization and simulation of tactile sensors

Pezzementi, Z., Jantho, E., Estrade, L. & Hager, G. D., Jan 1 2010, 2010 IEEE Haptics Symposium, HAPTICS 2010. IEEE Computer Society, p. 199-205 7 p. 5444654. (2010 IEEE Haptics Symposium, HAPTICS 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Characterization of antimicrobial peptide activity by electrochemical impedance spectroscopy

Chang, W. K., Wimley, W. C., Searson, P. C., Hristova, K. & Merzlyakov, M., Oct 1 2008, In : Biochimica et Biophysica Acta - Biomembranes. 1778, 10, p. 2430-2436 7 p.

Research output: Contribution to journalArticle

Characterization of Membrane Protein Interactions in Plasma Membrane Derived Vesicles with Quantitative Imaging Förster Resonance Energy Transfer

Sarabipour, S., Del Piccolo, N. & Hristova, K., Aug 5 2015, In : Accounts of chemical research. 48, 8, p. 2262-2269 8 p.

Research output: Contribution to journalArticle

Characterization of Monobody Scaffold Interactions with Ligand via Force Spectroscopy and Steered Molecular Dynamics

Cheung, L. S. L., Shea, D. J., Nicholes, N., Date, A., Ostermeier, M. & Konstantopoulos, K., Feb 4 2015, In : Scientific reports. 5, 8247.

Research output: Contribution to journalArticle

Chemical and mechanical stimuli act on common signal transduction and cytoskeletal networks

Artemenko, Y., Axiotakis, L., Borleis, J., Iglesias, P. A. & Devreotes, P. N., Nov 22 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 47, p. E7500-E7509

Research output: Contribution to journalArticle

Chemoattractant signaling in Dictyostelium: Adaptation and amplification

Iglesias, P. A., Feb 28 2012, In : Science signaling. 5, 213, pe8.

Research output: Contribution to journalReview article

Chemoattractant signaling in Dictyostelium discoideum

Manahan, C. L., Iglesias, P. A., Long, Y. & Devreotes, P. N., Nov 23 2004, In : Annual Review of Cell and Developmental Biology. 20, p. 223-253 31 p.

Research output: Contribution to journalReview article

Chemotaxis of cell populations through confined spaces at Single-Cell resolution

Tong, Z. Q., Balzer, E. M., Dallas, M. R., Hung, W. C., Stebe, K. J. & Konstantopoulos, K., Jan 18 2012, In : PloS one. 7, 1, e29211.

Research output: Contribution to journalArticle

Chiral acidic amino acids induce chiral hierarchical structure in calcium carbonate

Jiang, W., Pacella, M. S., Athanasiadou, DI., Nelea, V., Vali, H., Hazen, R. M., Gray, J. J. & McKee, M. D., Apr 13 2017, In : Nature Communications. 8, 15066.

Research output: Contribution to journalArticle

Chiral switching in biomineral suprastructures induced by homochiral l-amino acid

Jiang, W., Pacella, M. S., Vali, H., Gray, J. J. & McKee, M. D., Aug 1 2018, In : Science advances. 4, 8, eaas9819.

Research output: Contribution to journalArticle

CIS-UltraCal: An open-source ultrasound calibration toolkit

Kon, R., Leven, J., Kothapalli, K., Boctor, E., Fichtinger, G., Hager, G. & Taylor, R. H., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5750, p. 516-523 8 p., 56.

Research output: Contribution to journalConference article

CISUS: An integrated 3D ultrasound system for IGT using a modular tracking API

Boctor, E. M., Viswanathan, A., Pieper, S., Choti, M. A., Taylor, R. H., Kikinis, R. & Fichtinger, G., Oct 27 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5367, p. 247-256 10 p.

Research output: Contribution to journalConference article

Class 3 semaphorins induce F-actin reorganization in human dendritic cells: Role in cell migration

Curreli, S., Wong, B. S., Latinovic, O., Konstantopoulo, K. & Stamatos, N. M., Dec 2016, In : Journal of Leukocyte Biology. 100, 6, p. 1323-1334 12 p.

Research output: Contribution to journalArticle

Closed loop cancellations in H infinity control of time-varying systems

O’brien, R. O. & Iglesias, P. A., Jan 1 1998, In : International Journal of Control. 71, 1, p. 163-189 27 p.

Research output: Contribution to journalArticle

Cloud computing and the DNA data race

Schatz, M. C., Langmead, B. & Salzberg, S. L., Jul 2010, In : Nature biotechnology. 28, 7, p. 691-693 3 p.

Research output: Contribution to journalComment/debate

Cloud-scale RNA-sequencing differential expression analysis with Myrna.

Langmead, B., Hansen, K. D. & Leek, J. T., 2010, In : Genome biology. 11, 8, p. R83

Research output: Contribution to journalArticle

Cluster expansion for the ising model

Farrell, R. A., Morita, T. & Meijer, P. H. E., Jan 1 1966, In : The Journal of Chemical Physics. 45, 1, p. 349-363 15 p.

Research output: Contribution to journalArticle

Cluster expansion of the lattice gas: Determination of the first ten high-temperature coefficients

Meijer, P. H. E., Farrell, R. A. & Sommerfeldt, E. E., Jul 1972, In : Physica. 60, 1, p. 114-129 16 p.

Research output: Contribution to journalArticle

Clustering longitudinal clinical marker trajectories from electronic health data: Applications to phenotyping and endotype discovery

Schulam, P., Wigley, F. & Saria, S., Jun 1 2015, Proceedings of the 29th AAAI Conference on Artificial Intelligence, AAAI 2015 and the 27th Innovative Applications of Artificial Intelligence Conference, IAAI 2015. AI Access Foundation, p. 2956-2964 9 p. (Proceedings of the National Conference on Artificial Intelligence; vol. 4).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Coexistence curves for fourth-neighbor Ising models on the face-centered-cubic lattice

Farrell, R. A., Favin, S., Sullivan, J. T., Vimolvanich, S. & Meijer, P. H. E., Jan 1 1979, In : Physical Review B. 19, 9, p. 4703-4710 8 p.

Research output: Contribution to journalArticle