Whiting School of Engineering

Research Output

14-3-3 coordinates microtubules, rac, and myosin II to control cell mechanics and cytokinesis

Zhou, Q., Kee, Y. S., Poirier, C. C., Jelinek, C., Osborne, J., Divi, S., Surcel, A., Will, M. E., Eggert, U. S., Müller-Taubenberger, A., Iglesias, P. A., Cotter, R. J. & Robinson, D. N., Nov 9 2010, In : Current Biology. 20, 21, p. 1881-1889 9 p.

Research output: Contribution to journalArticle

2019 data fusion contest

Le Saux, B., Yokoya, N., Hansch, R., Brown, M. & Hager, G., Mar 1 2019, IEEE Geoscience and Remote Sensing Magazine, 7, 1, p. 103-105 3 p.

Research output: Contribution to specialist publicationArticle

2D–3D radiograph to cone-beam computed tomography (CBCT) registration for C-arm image-guided robotic surgery

Liu, W. P., Otake, Y., Azizian, M., Wagner, O. J., Sorger, J. M., Armand, M. & Taylor, R. H., Aug 5 2015, In : International Journal of Computer Assisted Radiology and Surgery. 10, 8, p. 1239-1252 14 p.

Research output: Contribution to journalArticle

2D Modeling and Correction of Fan-Beam Scan Geometry in OCT

Chen, M., Gee, J. C., Prince, J. L. & Aguirre, G. K., Jan 1 2018, Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Taylor, Z., Bogunovic, H., Snead, D., Garvin, M. K., Chen, X. J., Ciompi, F., Xu, Y., Maier-Hein, L., Veta, M., Trucco, E., Stoyanov, D., Rajpoot, N., van der Laak, J., Martel, A. & McKenna, S. (eds.). Springer Verlag, p. 328-335 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11039 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3D displacement field reconstruction from planar tagged cardiac MR images

Denney, T. S. & Prince, J. L., Dec 1 1994, p. 51-60. 10 p.

Research output: Contribution to conferencePaper

3D displacement field reconstruction on an irregular domain from planar tagged cardiac MR images

Denney, T. S. & Prince, J. L., Dec 1 1994, p. 172-177. 6 p.

Research output: Contribution to conferencePaper

3D Measurements of Acceleration-Induced Brain Deformation via Harmonic Phase Analysis and Finite-Element Models

Gomez, A., Knutsen, A., Xing, F., Chan, D., Lu, Y. C., Pham, D., Bayly, P. V. & Prince, J. L., Jan 1 2018, (Accepted/In press) In : IEEE Transactions on Biomedical Engineering.

Research output: Contribution to journalArticle

3D motion tracking of pulmonary lesions using CT fluoroscopy images for robotically assisted lung biopsy

Xu, S., Fichtinger, G., Taylor, R. H. & Cleary, K., Oct 27 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5367, p. 394-402 9 p.

Research output: Contribution to journalConference article

3-DOF Force-Sensing Motorized Micro-Forceps for Robot-Assisted Vitreoretinal Surgery

Gonenc, B., Chamani, A., Handa, J., Gehlbach, P., Taylor, R. H. & Iordachita, I., Jun 1 2017, In : IEEE Sensors Journal. 17, 11, p. 3526-3541 16 p., 7903591.

Research output: Contribution to journalArticle

3D optical coherence tomography image registration for guiding cochlear implant insertion

Cheon, G. W., Jeong, H. W., Chalasani, P., Chien, W. W., Iordachita, I., Taylor, R., Niparko, J. & Kang, J. U., Jan 1 2014, Photonic Therapeutics and Diagnostics X. SPIE, 89261Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8926).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3D structural measurements of the proximal fFemur from 2D DXA images using a statistical atlas

Ahmad, O. M., Ramamurthi, K., Wilson, K. E., Engelke, K., Bouxsein, M. & Taylor, R. H., Jun 15 2009, Medical Imaging 2009: Computer-Aided Diagnosis. 726005. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7260).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3D thread tracking for robotic assistance in tele-surgery

Padoy, N. & Hager, G. D., Dec 29 2011, IROS'11 - 2011 IEEE/RSJ International Conference on Intelligent Robots and Systems: Celebrating 50 Years of Robotics. p. 2102-2107 6 p. 6048574. (IEEE International Conference on Intelligent Robots and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3D tongue motion from tagged and cine MR images

Xing, F., Woo, J., Murano, E. Z., Lee, J., Stone, M. & Prince, J. L., Oct 24 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 3 ed. p. 41-48 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8151 LNCS, no. PART 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3D topology preserving flows for viewpoint-based cortical unfolding

Rocha, K. R., Sundaramoorthi, G., Yezzi, A. J. & Prince, J. L., Dec 1 2009, In : International Journal of Computer Vision. 85, 3, p. 223-236 14 p.

Research output: Contribution to journalArticle

3D vector tomography on bounded domains

Osman, N. F. & Prince, J. L., Dec 1 1998, In : Inverse Problems. 14, 1, p. 185-196 12 p.

Research output: Contribution to journalArticle

A $3 trillion challenge to computational scientists: Transforming healthcare delivery

Saria, S., Jul 1 2014, In : IEEE Intelligent Systems. 29, 4, p. 82-87 6 p., 6908959.

Research output: Contribution to journalArticle

A 2D moving grid geometric deformable model

Han, X., Xu, C. & Prince, J. L., Sep 1 2003, In : Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 1, p. I/153-I/160

Research output: Contribution to journalConference article

A 3D Computational Head Model Under Dynamic Head Rotation and Head Extension Validated Using Live Human Brain Data, Including the Falx and the Tentorium

Lu, Y. C., Daphalapurkar, N. P., Knutsen, A. K., Glaister, J., Pham, D. L., Butman, J. A., Prince, J. L., Bayly, P. V. & Ramesh, K. T., Jan 1 2019, In : Annals of biomedical engineering.

Research output: Contribution to journalArticle

A 3-D computational model predicts that cell deformation affects selectin-mediated leukocyte rolling

Jadhav, S., Eggleton, C. D. & Konstantopoulos, K., Jan 2005, In : Biophysical journal. 88, 1, p. 96-104 9 p.

Research output: Contribution to journalArticle

A 3d-elastography-guided system for laparoscopic partial nephrectomies

Stolka, P. J., Keil, M., Sakas, G., McVeigh, E., Allaf, M. E., Taylor, R. H. & Boctor, E. M., Jan 1 2010, Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling. Wong, K. H. & Miga, M. I. (eds.). SPIE, 76251I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7625).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Bayesian approach to distinguishing interdigitated tongue muscles from limited diffusion magnetic resonance imaging

Ye, C., Murano, E., Stone, M. & Prince, J. L., Oct 2015, In : Computerized Medical Imaging and Graphics. 45, p. 63-74 12 p.

Research output: Contribution to journalArticle

A Bayesian approach to fiber orientation estimation guided by volumetric tract segmentation

Ye, C. & Prince, J. L., Dec 1 2016, In : Computerized Medical Imaging and Graphics. 54, p. 35-47 13 p.

Research output: Contribution to journalArticle

A Benchmarking Study of Peptide-Biomineral Interactions

Pacella, M. S. & Gray, J. J., Jan 23 2017, In : Crystal Growth and Design. 18, 2, p. 607-616 10 p.

Research output: Contribution to journalArticle

Ablation monitoring with a regularized 3D elastography technique

Rivaz, H., Fleming, I., Matinfar, M., Ahmad, O., Khamene, A., Choti, M., Hager, G. & Boctor, E., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 308-312 5 p., 4803710.

Research output: Contribution to journalConference article

Ablation monitoring with elastography: 2D in-vivo and 3D ex-vivo studies

Rivaz, H., Fleming, I., Assumpcao, L., Fichtinger, G., Hamper, U., Choti, M., Hager, G. & Boctor, E., Dec 1 2008, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008 - 11th International Conference, Proceedings. PART 2 ed. p. 458-466 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5242 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract: Learning to avoid poor images: towards task-aware c-arm cone-beam ct trajectories

Zaech, J. N., Gao, C., Bier, B., Taylor, R., Maier, A., Navab, N. & Unberath, M., Jan 1 2020, Bildverarbeitung für die Medizin 2020 Algorithmen - Systeme - Anwendungen. Proceedings des Workshops. Tolxdorff, T., Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K. H. & Palm, C. (eds.). Springer, 1 p. (Informatik aktuell).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

A C-arm fluoroscopy-guided progressive cut refinement strategy using a surgical robot

Yao, J., Taylor, R. H., Goldberg, R. P., Kumar, R., Bzostek, A., Van Vorhis, R., Kazanzides, P. & Gueziec, A., Jan 1 2000, In : Computer Aided Surgery. 5, 6, p. 373-390 18 p.

Research output: Contribution to journalArticle

Accuracy assessment and kinematic calibration of the robotic endoscopic microsurgical system

Feng, L., Wilkening, P., Sevimli, Y., Balicki, M., Olds, K. C. & Taylor, R. H., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 5091-5094 4 p. 7591872

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Accuracy of localization of prostate lesions using manual palpation and ultrasound elastography

Kuta, C., Schneider, C., -Monroe, N. C., Su, L. M., Boctor, E. & Taylor, R., Jun 19 2009, Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling. 726128. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7261).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Accurate structure prediction of CDR H3 loops enabled by a novel structure-based C-terminal constraint

Weitzner, B. D. & Gray, J. J., Jan 1 2017, In : Journal of Immunology. 198, 1, p. 505-515 11 p.

Research output: Contribution to journalArticle

Acidic C-terminal domains autoregulate the RNA chaperone Hfq

Santiago-Frangos, A., Jeliazkov, J. R., Gray, J. J. & Woodson, S. A., Aug 9 2017, In : eLife. 6, e27049.

Research output: Contribution to journalArticle

A clinical pilot study of a modular video-CT augmentation system for image-guided skull base surgery

Liu, W. P., Mirota, D. J., Uneri, A., Otake, Y., Hager, G., Reh, D. D., Ishii, M., Gallia, G. L. & Siewerdsen, J. H., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 831633. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A combined harmonic phase and strain-encoded pulse sequence for measuring three-dimensional strain

Sampath, S., Osman, N. F. & Prince, J. L., Jan 1 2009, In : Magnetic Resonance Imaging. 27, 1, p. 55-61 7 p.

Research output: Contribution to journalArticle

A combined statistical and biomechanical model for estimation of intra-operative prostate deformation

Mohamed, A., Davatzikos, C. & Taylor, R., Jan 1 2002, Medical Image Computing and Computer-Assisted Intervention - 5th International Conference, MICCAI 2002, Proceedings. Dohi, T. & Kikinis, R. (eds.). Springer Verlag, p. 452-460 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2489).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

A comparative study for robot assisted vitreoretinal surgery: Micron vs. the Steady-Hand Robot

Gonenc, B., Handa, J., Gehlbach, P., Taylor, R. H. & Iordachita, I., Nov 14 2013, 2013 IEEE International Conference on Robotics and Automation, ICRA 2013. p. 4832-4837 6 p. 6631266. (Proceedings - IEEE International Conference on Robotics and Automation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A comparison of methods to assess cell mechanical properties

Wu, P. H., Aroush, D. R. B., Asnacios, A., Chen, W. C., Dokukin, M. E., Doss, B. L., Durand-Smet, P., Ekpenyong, A., Guck, J., Guz, N. V., Janmey, P. A., Lee, J. S. H., Moore, N. M., Ott, A., Poh, Y. C., Ros, R., Sander, M., Sokolov, I., Staunton, J. R., Wang, N. & 2 others, Whyte, G. & Wirtz, D., Jun 18 2018, (Accepted/In press) In : Nature Methods. p. 1-8 8 p.

Research output: Contribution to journalArticle

A comprehensive, high-resolution map of a Gene's fitness landscape

Firnberg, E., Labonte, J. W., Gray, J. J. & Ostermeier, M., Jun 2014, In : Molecular biology and evolution. 31, 6, p. 1581-1592 12 p.

Research output: Contribution to journalArticle

A compressed sensing approach for MR tissue contrast synthesis

Roy, S., Carass, A. & Prince, J., Jun 30 2011, Information Processing in Medical Imaging - 22nd International Conference, IPMI 2011, Proceedings. p. 371-383 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6801 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A Computational Alternative for Variational Expressions that Involve Dyadic Green Functions

Krill, J. A., Andreo, R. H. & Farrell, R. A., Sep 1982, In : IEEE Transactions on Antennas and Propagation. 30, 5, p. 1003-1005 3 p.

Research output: Contribution to journalArticle

A computational architecture for programmable automation research

Taylor, R. H., Korein, J. U., Maier, G. E. & Durfee, L. F., Mar 27 1987, In : Proceedings of SPIE - The International Society for Optical Engineering. 726, p. 438-444 7 p.

Research output: Contribution to journalArticle

A computational framework for complementary situational awareness (CSA) in surgical assistant robots

Chalasani, P., Deguet, A., Kazanzides, P. & Taylor, R. H., Apr 2 2018, Proceedings - 2nd IEEE International Conference on Robotic Computing, IRC 2018. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-January. p. 9-16 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A computational method for computing an Alzheimer's disease progression score; experiments and validation with the ADNI data set

Alzheimer's Disease Neuroimaging Initiative, Jan 1 2015, In : Neurobiology of Aging. 36, S1, p. S178-S184

Research output: Contribution to journalArticle

A computational model for the formation of lamin-B mitotic spindle envelope and matrix

Shi, C., Channels, W. E., Zheng, Y. & Iglesias, P. A., Jan 1 2014, In : Interface Focus. 4, 3

Research output: Contribution to journalArticle

A computational neurodegenerative disease progression score: Method and results with the Alzheimer's disease neuroimaging initiative cohort

Jedynak, B. M., Lang, A., Liu, B., Katz, E., Zhang, Y., Wyman, B. T., Raunig, D., Jedynak, C. P., Caffo, B. & Prince, J. L., Nov 15 2012, In : NeuroImage. 63, 3, p. 1478-1486 9 p.

Research output: Contribution to journalArticle

A computerized approach for morphological analysis of the corpus callosum

Davatzikos, C., Vaillant, M., Resnick, S. M., Prince, J. L., Letovsky, S. & Bryan, R. N., Feb 14 1996, In : Journal of computer assisted tomography. 20, 1, p. 88-97 10 p.

Research output: Contribution to journalArticle

A constrained optimization approach to virtual fixtures

Li, M., Kapoor, A. & Taylor, R. H., Dec 1 2005, 2005 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS. p. 2924-2929 6 p. 1545420. (2005 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A constrained optimization approach to virtual fixtures for multi-handed tasks

Kapoor, A. & Taylor, R. H., Sep 18 2008, 2008 IEEE International Conference on Robotics and Automation, ICRA 2008. p. 3401-3406 6 p. 4543730. (Proceedings - IEEE International Conference on Robotics and Automation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A constrained optimization approach to virtual fixtures for multi-robot collaborative teleoperation

Xia, T., Kapoor, A., Kazanzides, P. & Taylor, R., Dec 29 2011, IROS'11 - 2011 IEEE/RSJ International Conference on Intelligent Robots and Systems: Celebrating 50 Years of Robotics. p. 639-644 6 p. 6048816. (IEEE International Conference on Intelligent Robots and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A continuum computational model of mitotic matrix formation

Shi, C., Channels, W. E., Zheng, Y. & Iglesias, P. A., Jun 6 2011, 2011 45th Annual Conference on Information Sciences and Systems, CISS 2011. 5766243. (2011 45th Annual Conference on Information Sciences and Systems, CISS 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution