Johns Hopkins University

Research Output 1914 2018

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Conference contribution
2017

A fixed-point model for pancreas segmentation in abdominal CT scans

Zhou, Y., Xie, L., Shen, W., Wang, Y., Fishman, E. K. & Yuille, A. L. 2017 Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag, Vol. 10433 LNCS, p. 693-701 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS)

Research output: ResearchConference contribution

Segmentation
Fixed point
Model
Computerized tomography
Masks

A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging

Xing, F., Prince, J. L., Stone, M., Wedeen, V. J., El Fakhri, G. & Woo, J. 2017 Medical Imaging 2017: Image Processing. SPIE, Vol. 10133, 101331H

Research output: ResearchConference contribution

Cine Magnetic Resonance Imaging
Atlases
Tongue
Magnetic resonance
Imaging techniques

Analysis of various parameters affecting signals in resting-state mouse brain photoacoustic microscopy: A simulation study

Ghadiri, H., Fouladi, M. R. & Rahmim, A. Mar 2 2017 Proceedings - 2016 2nd International Conference of Signal Processing and Intelligent Systems, ICSPIS 2016. Institute of Electrical and Electronics Engineers Inc., 7869902

Research output: ResearchConference contribution

Photoacoustic microscopy
Photoacoustic effect
Brain
Imaging techniques
Spectrum analysis

An investigation of low-dose 3D scout scans for computed tomography

Gomes, J., Gang, G. J., Mathews, A. & Stayman, J. W. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 101322M

Research output: ResearchConference contribution

Patient Positioning
Tomography
tomography
dosage
acquisition

A novel 3D ultrasound thermometry method for HIFU ablation using an ultrasound element

Kim, Y., Audigier, C., Ellens, N. & Boctor, E. M. Oct 31 2017 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8091592

Research output: ResearchConference contribution

ablation
temperature measurement
temperature
cost effectiveness
samplers

A novel 3D ultrasound thermometry method for HIFU ablation using an ultrasound element

Kim, Y., Audigier, C., Ellens, N. & Boctor, E. Oct 31 2017 2017 IEEE International Ultrasonics Symposium, IUS 2017. IEEE Computer Society, 8092773

Research output: ResearchConference contribution

ablation
temperature measurement
temperature
magnetic resonance
acoustics

A Novel Ultrasound Imaging Method for 2D Temperature Monitoring of Thermal Ablation

Audigier, C., Kim, Y. & Boctor, E. 2017 Imaging for Patient-Customized Simulations and Systems for Point-of-Care Ultrasound - International Workshops, BIVPCS 2017 and POCUS 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10549 LNCS, p. 154-162 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10549 LNCS)

Research output: ResearchConference contribution

Ablation
Ultrasonics
Imaging techniques
Monitoring
Temperature

A radiative transfer equation-based image-reconstruction method incorporating boundary conditions for diffuse optical imaging

Jha, A. K., Zhu, Y., Wong, D. F. & Rahmim, A. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 1013705

Research output: ResearchConference contribution

Radiative transfer
Image reconstruction
Refractive index
Photons
Boundary conditions

Assessment of lexiscan for blood brain barrier disruption to facilitate fluorescence brain imaging

Pak, R. W., Le, H. N. D., Valentine, H., Thorek, D., Rahmim, A., Wong, D. & Kang, J. U. 2017 CLEO: Applications and Technology, CLEO_AT 2017. OSA - The Optical Society, Vol. Part F43-CLEO_AT 2017

Research output: ResearchConference contribution

Brain
Coloring Agents
Fluorescence
Imaging techniques
Blood-Brain Barrier

A study of modeling x-ray transmittance for material decomposition without contrast agents

Lee, O., Kappler, S., Polster, C. & Taguchi, K. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 101323G

Research output: ResearchConference contribution

transmittance
decomposition
x rays
Contrast Media
Decomposition

A three-step reconstruction method for fluorescence molecular tomography based on compressive sensing

Zhu, Y., Jha, A. K., Dreyer, J. K., Le, H. N. D., Kang, J. U., Roland, P. E., Wong, D. F. & Rahmim, A. 2017 Optical Tomography and Spectroscopy of Tissue XII. SPIE, Vol. 10059, 1005911

Research output: ResearchConference contribution

Tomography
Fluorescence
tomography
fluorescence
Scattering

Atlas-based automatic measurements of the morphology of the tibiofemoral joint

Brehler, M., Thawait, G., Shyr, W., Ramsay, J., Siewerdsen, J. H. & Zbijewski, W. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101370E

Research output: ResearchConference contribution

Atlases
Joints
slopes
Radiologists
landmarks

Audio-Visual beamforming with the Eigenmike microphone array an omni-camera and cognitive auditory features

Mendat, D. R., West, J. E., Ramenahalli, S., Niebur, E. & Andreou, A. G. May 10 2017 2017 51st Annual Conference on Information Sciences and Systems, CISS 2017. Institute of Electrical and Electronics Engineers Inc., 7926180

Research output: ResearchConference contribution

Microphones
Beamforming
Acoustics
Cameras
Acoustic waves

A unified Bayesian approach to extract network-based functional differences from a heterogeneous patient cohort

Venkataraman, A., Wymbs, N., Nebel, M. B. & Mostofsky, S. 2017 Connectomics in NeuroImaging - 1st International Workshop, CNI 2017 Held in Conjunction with MICCAI 2017, Proceedings. Springer Verlag, Vol. 10511 LNCS, p. 60-69 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10511 LNCS)

Research output: ResearchConference contribution

Bayesian Approach
Model
Connectivity
Framework
EM Algorithm

Automated head motion system improves reliability and lessens operator dependence for head impulse testing of vestibular reflexes

Tan, G. X., Schoo, D. P., Santina, C. C. D., Rahman, M. A., Valentin Contreras, N. S., Sun, C. H. & Chiang, B. Jul 19 2017 2017 IEEE International Symposium on Medical Measurements and Applications, MeMeA 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 94-99 6 p. 7985856

Research output: ResearchConference contribution

reflexes
impulses
operators
Reflex
Head

Automatic detection of pneumonia analyzing ultrasound digital images

Barrientos, R., Roman-Gonzalez, A., Barrientos, F., Solis, L., Correa, M., Pajuelo, M., Anticona, C., Lavarello, R., Castaneda, B., Oberhelman, R., Checkley, W., Gilman, R. H. & Zimic, M. Jun 7 2017 2016 IEEE 36th Central American and Panama Convention, CONCAPAN 2016. Institute of Electrical and Electronics Engineers Inc., 7942375

Research output: ResearchConference contribution

Ultrasound Image
Digital Image
Pneumonia
Ultrasound
Ultrasonics

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images

Glaister, J., Carass, A., Pham, D. L., Butman, J. A. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371D

Research output: ResearchConference contribution

Dura Mater
Spinal Cord
Magnetic Resonance Spectroscopy
Brain
Magnetic resonance

Brain perfusion imaging using a Reconstruction-of-Difference (RoD) approach for cone-beam computed tomography

Mow, M., Zbijewski, W., Sisniega, A., Xu, J., Dang, H., Stayman, J. W., Wang, X., Foos, D. H., Koliatsos, V., Aygun, N. & Siewerdsen, J. H. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 1013212

Research output: ResearchConference contribution

Cone-Beam Computed Tomography
Perfusion Imaging
Neuroimaging
Perfusion
brain

C-arm positioning using virtual fluoroscopy for image-guided surgery

De Silva, T., Punnoose, J., Uneri, A., Goerres, J., Jacobson, M., Ketcha, M. D., Manbachi, A., Vogt, S., Kleinszig, G., Khanna, A. J., Wolinksy, J. P., Osgood, G. & Siewerdsen, J. H. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 101352K

Research output: ResearchConference contribution

fluoroscopy
surgery
positioning
Operating rooms
Surgery

Catheter tracking in an interventional photoacoustic surgical system

Cheng, A., Itsarachaiyot, Y., Kim, Y., Zhang, H. K., Taylor, R. H. & Boctor, E. M. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013527

Research output: ResearchConference contribution

Photoacoustic effect
Catheters
Imaging techniques
markers
Cameras

Classification of pancreatic cysts in computed tomography images using a random forest and convolutional neural network ensemble

Dmitriev, K., Kaufman, A. E., Javed, A. A., Hruban, R. H., Fishman, E. K., Lennon, A. M. & Saltz, J. H. 2017 Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag, Vol. 10435 LNCS, p. 150-158 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10435 LNCS)

Research output: ResearchConference contribution

Neural Network Ensemble
Random Forest
Computed Tomography
Tomography
Neural networks

Collaborative SDOCT segmentation and analysis software

Yun, Y., Carass, A., Lang, A., Prince, J. L. & Antony, B. J. 2017 Medical Imaging 2017: Imaging Informatics for Healthcare, Research, and Applications. SPIE, Vol. 10138, 1013813

Research output: ResearchConference contribution

Optical Coherence Tomography
Software
Databases
scanners
tomography

Combined eye-head vs. head-only scanning in a blind patient implanted with the Argus II retinal prosthesis

Caspi, A., Rosendall, P. E., Harper, J. W., Barry, M. P., Katyal, K. D., Dagnelie, G. & Roy, A. Aug 10 2017 8th International IEEE EMBS Conference on Neural Engineering, NER 2017. IEEE Computer Society, p. 29-32 4 p. 8008284

Research output: ResearchConference contribution

Cameras
Scanning
Prostheses and Implants
Eye movements
Glass

Combining neural electrodes and triboelectric nanogenerators (TENGS) to enable a self-sustainable platform for neuromodulation

Lee, S., Wang, H., Shi, Q., Wang, J., He, T., Wu, H., Thakor, N. V., Yen, S. C. & Lee, C. Jul 26 2017 TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems. Institute of Electrical and Electronics Engineers Inc., p. 1808-1811 4 p. 7994420

Research output: ResearchConference contribution

nerves
rats
platforms
electrodes
Rats

Computational modeling of radiofrequency ablation: Evaluation on ex vivo data using ultrasound monitoring

Audigier, C., Kim, Y., Dillow, A. & Boctor, E. M. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013525

Research output: ResearchConference contribution

Ablation
Ultrasonics
Monitoring
ablation
evaluation

Consistent evaluation of an ultrasound-guided surgical navigation system by utilizing an active validation platform

Kim, Y., Kim, S. & Boctor, E. M. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013524

Research output: ResearchConference contribution

navigation
needles
platforms
evaluation
Navigation systems

Co-robotic ultrasound imaging: A cooperative force control approach

Finocchi, R., Aalamifar, F., Fang, T. Y., Taylor, R. H. & Boctor, E. M. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013510

Research output: ResearchConference contribution

Force control
Robotics
Ultrasonics
Imaging techniques
Physical Exertion

CoSTAR: Instructing collaborative robots with behavior trees and vision

Paxton, C., Hundt, A., Jonathan, F., Guerin, K. & Hager, G. D. Jul 21 2017 ICRA 2017 - IEEE International Conference on Robotics and Automation. Institute of Electrical and Electronics Engineers Inc., p. 564-571 8 p. 7989070

Research output: ResearchConference contribution

Robots
Industrial robots
Robotics
Automation
Innovation

Cross validating hyperspectral with Ultrasound-based skin thickness estimation

Vyas, S., Meyerle, J. & Burlina, P. Oct 19 2017 2014 6th Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing, WHISPERS 2014. IEEE Computer Society, Vol. 2014-June, 8077565

Research output: ResearchConference contribution

Noninvasive medical procedures
Physiological models
Dermatology
Thickness measurement
Physiology

Deep supervision for pancreatic cyst segmentation in abdominal CT scans

Zhou, Y., Xie, L., Fishman, E. K. & Yuille, A. L. 2017 Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag, Vol. 10435 LNCS, p. 222-230 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10435 LNCS)

Research output: ResearchConference contribution

Segmentation
Computerized tomography
Computer aided diagnosis
Backpropagation
Dice

Deformable 3D-2D registration for guiding K-wire placement in pelvic trauma surgery

Goerres, J., Jacobson, M., Uneri, A., De Silva, T., Ketcha, M., Reaungamornrat, S., Vogt, S., Kleinszig, G., Wolinsky, J. P., Osgood, G. & Siewerdsen, J. H. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 101350A

Research output: ResearchConference contribution

surgery
wire
Bone Wires
Wounds and Injuries
Surgery

Deformable known component model-based reconstruction for coronary CT angiography

Zhang, X., Tilley, S., Xu, S., Mathews, A., McVeigh, E. R. & Stayman, J. W. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 1013213

Research output: ResearchConference contribution

angiography
metals
Coronary Angiography
Metals
Computed Tomography Angiography

Design and development of 5-Axis cranial implant laser cutting system

Liu, J., Fang, J., Murphy, R. J., Gordon, C. & Armand, M. Jan 1 2017 37th Computers and Information in Engineering Conference. American Society of Mechanical Engineers (ASME), Vol. 1, 68064

Research output: ResearchConference contribution

Computer aided manufacturing
Tumors
Computer aided design
Defects
Lasers

Development and clinical translation of a cone-beam CT scanner for high-quality imaging of intracranial hemorrhage

Sisniega, A., Xu, J., Dang, H., Zbijewski, W., Stayman, J. W., Mow, M., Koliatsos, V. E., Aygun, N., Wang, X., Foos, D. H. & Siewerdsen, J. H. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 101320K

Research output: ResearchConference contribution

hemorrhages
scanners
cones
Cones
Imaging techniques

Diagnosis of autism using an eye tracking system

Vargas-Cuentas, N. I., Hidalgo, D., Roman-Gonzalez, A., Power, M., Gilman, R. H. & Zimic, M. Feb 15 2017 GHTC 2016 - IEEE Global Humanitarian Technology Conference: Technology for the Benefit of Humanity, Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 624-627 4 p. 7857343

Research output: ResearchConference contribution

Autistic Disorder
autism
Costs
Autism Spectrum Disorder
Language Development

Efficient multi-atlas registration using an intermediate template image

Dewey, B. E., Carass, A., Blitz, A. M. & Prince, J. L. 2017 Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, Vol. 10137, 101371F

Research output: ResearchConference contribution

Labels
templates
Atlases
Labeling
Brain

Estimating basis line-integrals in spectral distortion-modeled photon counting CT: K-edge imaging using dictionary learning-based x-ray transmittance modeling

Lee, O., Kappler, S., Polster, C. & Taguchi, K. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 101321A

Research output: ResearchConference contribution

dictionaries
learning
transmittance
counting
estimating

Evaluation of lung tumor motion management in radiation therapy with dynamic MRI

Park, S., Farah, R., Shea, S. M., Tryggestad, E., Hales, R. & Lee, J. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 101351R

Research output: ResearchConference contribution

lungs
radiation therapy
tumors
evaluation
Radiotherapy

Evaluation of optical coherence tomography distal sensor with high-index elliptical cone epoxy lens

Lee, S., Lee, C., Jeremy Chae, J., Cheon, G., Gonenc, B., Gehlbach, P. L. & Kang, J. U. 2017 CLEO: Applications and Technology, CLEO_AT 2017. OSA - The Optical Society, Vol. Part F43-CLEO_AT 2017

Research output: ResearchConference contribution

Optical tomography
Cones
Lenses
Sensors
Water

Experimental evaluation of dual multiple aperture devices for fluence field modulated x-ray computed tomography

Mathews, A. J., Gang, G., Levinson, R., Zbijewski, W., Kawamoto, S., Siewerdsen, J. H. & Stayman, J. W. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 101322O

Research output: ResearchConference contribution

fluence
tomography
apertures
evaluation
x rays

Exploiting HPO to predict a ranked list of phenotype categories for livertox case reports

Overby, C. L., Raschid, L. & Liu, H. 2017 Data Management and Analytics for Medicine and Healthcare - 2nd International Workshop, DMAH 2016 Held at VLDB 2016, Revised Selected Papers. Springer Verlag, Vol. 10186 LNCS, p. 3-9 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10186 LNCS)

Research output: ResearchConference contribution

Phenotype
Drugs
Ontology
Predict
Human

Ex vivo study of diffusion of indocyanine green (ICG) in cow retinal layers using optical coherence tomography

Lee, C., Lee, S., Jeremy Chae, J., Cheon, G., Gonenc, B., Gehlbach, P. L. & Kang, J. U. 2017 CLEO: Applications and Technology, CLEO_AT 2017. OSA - The Optical Society, Vol. Part F43-CLEO_AT 2017

Research output: ResearchConference contribution

Indocyanine Green
Optical tomography

False dyssynchrony: Problem with image-based cardiac functional analysis using x-ray computed tomography

Kidoh, M., Shen, Z., Suzuki, Y., Ciuffo, L., Ashikaga, H., Fung, G. S. K., Otake, Y., Zimmerman, S. L., Lima, J. A. C., Higuchi, T., Lee, O., Sato, Y., Becker, L. C., Fishman, E. K. & Taguchi, K. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 101321U

Research output: ResearchConference contribution

functional analysis
tomography
x rays
Functional analysis
Tomography

FBG-based large deflection shape sensing of a continuum manipulator: Manufacturing optimization

Sefati, S., Alambeigi, F., Iordachita, I., Murphy, R. J. & Armand, M. Jan 5 2017 IEEE Sensors, SENSORS 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7808910

Research output: ResearchConference contribution

Fiber Bragg gratings
Manipulators
Sensors
Wire
Fabrication

Filtering of the skin portion on lung ultrasound digital images to facilitate automatic diagnostics of pneumonia

Barrientos, F., Roman-Gonzalez, A., Barrientos, R., Solis, L., Alva, A., Correa, M., Pajuelo, M., Anticona, C., Lavarello, R., Castaneda, B., Oberhelman, R., Gilman, R. H. & Zimic, M. Jun 7 2017 2016 IEEE 36th Central American and Panama Convention, CONCAPAN 2016. Institute of Electrical and Electronics Engineers Inc., 7942376

Research output: ResearchConference contribution

Ultrasound Image
Lung
Digital Image
Skin
Diagnostics

Fundamental limits of image registration performance: Effects of image noise and resolution in CT-guided interventions

Ketcha, M. D., De Silva, T., Han, R., Uneri, A., Goerres, J., Jacobson, M., Vogt, S., Kleinszig, G. & Siewerdsen, J. H. 2017 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, Vol. 10135, 1013508

Research output: ResearchConference contribution

Image registration
Mean square error
Image quality
Noise
dosage

Geometric calibration using line fiducials for cone-beam CT with general, non-circular source-detector trajectories

Jacobson, M. W., Ketcha, M., Uneri, A., Goerres, J., De Silva, T., Reaungamornrat, S., Vogt, S., Kleinszig, G. & Siewerdsen, J. H. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 101320I

Research output: ResearchConference contribution

cones
trajectories
orbits
detectors
Cones

Head movements during visual exploration of natural images in virtual reality

Hu, B., Johnson-Bey, I., Sharma, M. & Niebur, E. May 10 2017 2017 51st Annual Conference on Information Sciences and Systems, CISS 2017. Institute of Electrical and Electronics Engineers Inc., 7926138

Research output: ResearchConference contribution

Virtual reality
Eye movements
Velocity distribution
Kinematics
Display devices

High-resolution extremity cone-beam CT with a CMOS detector: Task-based optimization of scintillator thickness

Cao, Q., Brehler, M., Sisniega, A., Stayman, J. W., Yorkston, J., Siewerdsen, J. H. & Zbijewski, W. 2017 Medical Imaging 2017: Physics of Medical Imaging. SPIE, Vol. 10132, 1013210

Research output: ResearchConference contribution

scintillation counters
CMOS
cones
optimization
high resolution

High resolution three-dimensional robotic synthetic tracked aperture ultrasound imaging: Feasibility study

Zhang, H. K., Fang, T. Y., Finocchi, R. & Boctor, E. M. 2017 Medical Imaging 2017: Ultrasonic Imaging and Tomography. SPIE, Vol. 10139, 1013914

Research output: ResearchConference contribution

robotics
apertures
high resolution
Robotics
Ultrasonics